Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0100G063 Amborella trichopoda HOM05D005412 ORTHO05D006096 0.0e+00 4017.6 2018 100.0
TAR376G0189 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 1575.5 2091 45.0
TAR628G0752 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 1562.4 2106 45.2
MBI02_g17325_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 0.0e+00 1547.3 2073 45.5
Nn5g30243 Nelumbo nucifera HOM05D005412 ORTHO05D006096 0.0e+00 1518.1 2100 43.8
PSO170G0229 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1481.1 2090 43.1
PSO210G3961 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1481.1 2088 43.3
Dinv23615 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 1449.9 2102 43.1
Dinv42150 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 1430.6 2112 42.5
GSVIVG01031759001 Vitis vinifera HOM05D005412 ORTHO05D006096 0.0e+00 1417.9 2076 42.4
Aqoxy5G01253 Aquilegia oxysepala HOM05D005412 ORTHO05D006096 0.0e+00 1388.2 2091 42.0
Manes.10G065500 Manihot esculenta HOM05D005412 ORTHO05D006096 0.0e+00 1372.8 2116 41.4
Prupe.8G123400 Prunus persica HOM05D005412 ORTHO05D006096 0.0e+00 1371.7 2095 41.6
Haze_01830 Corylus avellana HOM05D005412 ORTHO05D006096 0.0e+00 1368.2 2129 41.2
CSS0011349 Camellia sinensis var. sinensis HOM05D005412 ORTHO05D006096 0.0e+00 1365.1 2115 41.5
Ciclev10027665m.g Citrus clementina HOM05D005412 ORTHO05D006096 0.0e+00 1355.9 2100 41.8
QL11p036050 Quercus lobata HOM05D005412 ORTHO05D006096 0.0e+00 1355.1 2081 41.4
MD10G1093800 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 1351.3 2092 41.0
Thecc.02G099500 Theobroma cacao HOM05D005412 ORTHO05D006096 0.0e+00 1348.6 2091 41.3
COL.COLO4_32667 Corchorus olitorius HOM05D005412 ORTHO05D006096 0.0e+00 1344.3 2072 41.3
Rhsim11G0166400 Rhododendron simsii HOM05D005412 ORTHO05D006096 0.0e+00 1344.3 2116 40.9
RcHm_v2.0_Chr6g0256971 Rosa chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1343.6 2078 40.8
Potri.009G102900 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 1332.8 2099 41.3
CiPaw.05G051900 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 1330.1 2098 41.0
Duzib052G1101 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 1324.7 2089 40.3
MD05G1079500 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 1318.1 2076 40.8
FAN15G2385 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1317.0 2107 40.2
FAN24G2004 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1313.9 2097 40.2
TWI75G0165 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 1312.0 2100 40.9
Potri.004G141700 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 1310.0 2114 41.0
CiPaw.06G143300 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 1304.7 2104 41.1
Duzib248G0232 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 1298.5 2081 40.3
Lalb_Chr09g0328271 Lupinus albus HOM05D005412 ORTHO05D006096 0.0e+00 1298.5 2077 40.0
Gorai.005G238500 Gossypium raimondii HOM05D005412 ORTHO05D006096 0.0e+00 1295.8 2116 39.8
TWI79G0096 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 1288.9 2102 40.2
Sed0007905 Sechium edule HOM05D005412 ORTHO05D006096 0.0e+00 1280.0 2059 40.2
vmacro02202 Vaccinium macrocarpon HOM05D005412 ORTHO05D006096 0.0e+00 1275.8 2134 40.1
Glyma.07G211600 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1273.1 2078 38.7
Glyma.02G133400 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1270.4 2079 38.8
Cc02_g18700 Coffea canephora HOM05D005412 ORTHO05D006096 0.0e+00 1269.2 2103 39.2
ClCG05G010030 Citrullus lanatus HOM05D005412 ORTHO05D006096 0.0e+00 1268.4 2096 39.8
Sabra09G0078800 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 1266.1 2115 39.8
FAN27G2299 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1260.0 2097 39.3
Migut.B00339 Erythranthe guttata HOM05D005412 ORTHO05D006096 0.0e+00 1251.5 2085 39.7
Medtr4g086370 Medicago truncatula HOM05D005412 ORTHO05D006096 0.0e+00 1251.1 2067 38.6
Ca_18676_v3 Cicer arietinum L. HOM05D005412 ORTHO05D006096 0.0e+00 1250.7 2074 38.8
MELO3C019513.2 Cucumis melo HOM05D005412 ORTHO05D006096 0.0e+00 1248.4 2070 39.1
Lj4g0027932 Lotus japonicus HOM05D005412 ORTHO05D006096 0.0e+00 1246.1 2068 38.5
Eucgr.I01159 Eucalyptus grandis HOM05D005412 ORTHO05D006096 0.0e+00 1244.6 2101 39.5
arahy.Tifrunner.gnm1.ann1.Q5Y61J Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1242.6 2059 38.7
VMungo0251G1021 Vigna mungo HOM05D005412 ORTHO05D006096 0.0e+00 1239.9 2087 38.5
Sopen01g050390 Solanum pennellii HOM05D005412 ORTHO05D006096 0.0e+00 1234.2 2091 39.2
Peaxi162Scf00016g01825 Petunia axillaris HOM05D005412 ORTHO05D006096 0.0e+00 1233.8 2063 39.1
Phvul.003G295800 Phaseolus vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1232.6 2088 38.5
Solyc01g108160.3 Solanum lycopersicum HOM05D005412 ORTHO05D006096 0.0e+00 1232.6 2090 39.0
CAN.G1041.23 Capsicum annuum HOM05D005412 ORTHO05D006096 0.0e+00 1227.2 2115 39.0
arahy.Tifrunner.gnm1.ann1.4LZP30 Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1225.3 2074 38.1
Psat7g124160 Pisum sativum HOM05D005412 ORTHO05D006096 0.0e+00 1223.0 2073 38.0
Ah.02g117120 Amaranthus hybridus HOM05D005412 ORTHO05D006096 0.0e+00 1218.0 2093 38.4
DCAR_022030 Daucus carota HOM05D005412 ORTHO05D006096 0.0e+00 1217.6 2079 38.5
Thhalv10019879m.g Eutrema salsugineum HOM05D005412 ORTHO05D006096 0.0e+00 1217.6 2080 38.7
Sabra04G0093700 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 1216.4 2102 40.1
AUR62011444 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1207.6 2109 38.7
CsaV3_3G018540 Cucumis sativus L. HOM05D005412 ORTHO05D006096 0.0e+00 1197.6 1996 39.6
Hund00331 Selenicereus undatus HOM05D005412 ORTHO05D006096 0.0e+00 1184.5 2075 38.1
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 0.0e+00 1179.1 1991 39.3
BcaB06g25975 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1174.8 2076 38.0
Lj9C358T17 Lonicera japonica HOM05D005412 ORTHO05D006096 0.0e+00 1174.8 2033 38.9
HanXRQChr03g0072341 Helianthus annuus HOM05D005412 ORTHO05D006096 0.0e+00 1171.0 2041 38.4
THA.LOC104800351 Tarenaya hassleriana HOM05D005412 ORTHO05D006096 0.0e+00 1166.4 2069 37.5
A05p30450 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1163.7 2074 37.8
CARHR094600 Cardamine hirsuta HOM05D005412 ORTHO05D006096 0.0e+00 1161.4 2087 37.4
Nitab4.5_0003503g0010 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1159.4 2000 38.8
EL10Ac9g21835 Beta vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1157.9 2216 36.9
C05p46050 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1153.7 2074 37.4
AT3G19190 Arabidopsis thaliana HOM05D005412 ORTHO05D006096 0.0e+00 1148.3 2088 37.1
BcaNung06981 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1148.3 2079 37.3
BolC5t33332H Brassica oleracea HOM05D005412 ORTHO05D006096 0.0e+00 1147.9 2074 37.3
BraA05t21884Z Brassica rapa HOM05D005412 ORTHO05D006096 0.0e+00 1147.9 2076 37.7
Lsat_1_v5_gn_9_110121 Lactuca sativa HOM05D005412 ORTHO05D006096 0.0e+00 1147.1 2021 38.7
Sc14g0001650 Simmondsia chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1144.4 2026 37.7
Sp3g17260 Schrenkiella parvula HOM05D005412 ORTHO05D006096 0.0e+00 1142.5 2071 37.6
AL3G32570 Arabidopsis lyrata HOM05D005412 ORTHO05D006096 0.0e+00 1142.1 2069 36.6
Carub.0003s1902 Capsella rubella HOM05D005412 ORTHO05D006096 0.0e+00 1139.4 2072 37.0
Aa31LG8G5990 Aethionema arabicum HOM05D005412 ORTHO05D006096 0.0e+00 1138.3 2071 36.9
SGA_v2.0_scaffold90G27665 Striga asiatica HOM05D005412 ORTHO05D006096 0.0e+00 1122.8 2067 38.1
SEGI_28745 Sequoiadendron giganteum HOM05D005412 ORTHO05D006096 0.0e+00 1115.1 2141 35.7
Nitab4.5_0003080g0090 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1085.1 2015 37.1
Zm00001eb280540 Zea mays HOM05D005412 ORTHO05D006096 2.8e-310 1069.7 2033 35.3
Gohir.D02G210500 Gossypium hirsutum HOM05D005412 ORTHO05D006096 3.0e-280 969.9 1481 41.1
Gohir.A03G189900 Gossypium hirsutum HOM05D005412 ORTHO05D006096 1.1e-279 968.0 1481 41.1
FAN20G2783 Fragaria x ananassa HOM05D005412 ORTHO05D006096 3.5e-273 946.4 1797 36.2
FvH4_2g06220 Fragaria vesca HOM05D005412 ORTHO05D006096 3.0e-272 943.3 1799 36.1
Zm00001eb380180 Zea mays HOM05D005412 ORTHO05D006096 1.9e-258 897.5 1491 38.4
AUR62016618 Chenopodium quinoa HOM05D005412 ORTHO05D006096 2.5e-255 887.1 1812 35.7
TPR.G30829 Trifolium pratense HOM05D005412 ORTHO05D006096 5.6e-255 885.9 1864 33.9
Mapoly0038s0067 Marchantia polymorpha HOM05D005412 ORTHO05D006096 4.3e-247 859.8 2195 31.9
Cpa.g.sc62.21 Carica papaya HOM05D005412 ORTHO05D006096 9.3e-234 815.5 2066 31.8
AagrBONN_evm.TU.Sc2ySwM_369.474 Anthoceros agrestis HOM05D005412 ORTHO05D006096 3.4e-228 797.0 2092 30.4
CDE09G1352 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 1.6e-225 788.1 1686 33.8
Oeu025571.1 Olea europaea HOM05D005412 ORTHO05D006096 7.0e-205 719.5 1718 33.1
Atru.chr5.2730 Acer truncatum HOM05D005412 ORTHO05D006096 1.3e-182 645.6 1289 35.1
HPP92_028321 Vanilla planifolia HOM05D005412 ORTHO05D006096 2.1e-161 575.1 1759 28.4
Pp3c13_15610 Physcomitrium patens HOM05D005412 ORTHO05D006096 1.4e-152 545.8 1925 25.8
Atru.chr5.2729 Acer truncatum HOM05D005412 ORTHO05D006096 1.2e-151 542.7 554 54.9
unitig_21.g20750 Utricularia gibba HOM05D005412 ORTHO05D006096 5.8e-151 540.4 2043 27.2
CDE09G1277 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 1.8e-144 518.8 399 65.7
Actinidia12956 Actinidia chinensis HOM05D005412 ORTHO05D006096 5.3e-136 490.7 435 58.4
Os06g0267600 Oryza sativa ssp. japonica HOM05D005412 ORTHO05D006096 5.1e-123 447.6 385 60.5
Oeu025573.1 Olea europaea HOM05D005412 ORTHO05D006096 2.3e-115 422.2 337 65.9
SHI05373 Sapria himalayana HOM05D005412 ORTHO05D006096 1.4e-112 412.9 1112 29.9
FvH4_2g06211 Fragaria vesca HOM05D005412 ORTHO05D006096 1.1e-106 393.3 274 70.8
Actinidia00446 Actinidia chinensis HOM05D005412 ORTHO05D006096 3.2e-101 375.2 360 57.2
AUR62016617 Chenopodium quinoa HOM05D005412 ORTHO05D006096 2.6e-95 355.5 273 64.8
SMO196G0062 Selaginella moellendorffii HOM05D005412 ORTHO05D006096 2.3e-78 299.3 371 46.4
TPR.G30995 Trifolium pratense HOM05D005412 ORTHO05D006096 7.8e-71 274.2 198 64.6
Actinidia00447 Actinidia chinensis HOM05D005412 ORTHO05D006096 4.6e-63 248.4 436 37.8
Actinidia12957 Actinidia chinensis HOM05D005412 ORTHO05D006096 4.3e-61 241.9 1093 24.4
MBI18_g07589_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D006096 2.0e-50 206.5 177 56.5
MBI11_g39905_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 3.2e-48 199.1 180 57.8
MCO03G368 Micromonas commoda HOM05D005412 ORTHO05D006096 4.6e-47 195.3 477 31.7
SHI05374 Sapria himalayana HOM05D005412 ORTHO05D006096 6.0e-47 194.9 518 31.3
HPP92_028322 Vanilla planifolia HOM05D005412 ORTHO05D006096 1.5e-34 153.7 222 41.4
Oeu003689.1 Olea europaea HOM05D005412 ORTHO05D006096 1.7e-33 150.2 246 41.5
SHI05371 Sapria himalayana HOM05D005412 ORTHO05D006096 6.0e-31 141.7 178 49.4
Hma1.2p1_0028F.1_g017490 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 1.0e-30 141.0 80 77.5
PRCOL_00003309 Prasinoderma coloniale HOM05D005412 ORTHO05D006096 4.0e-27 129.0 392 27.0
Cre09.g408950 Chlamydomonas reinhardtii HOM05D005412 ORTHO05D006096 2.6e-26 126.3 218 35.8
CBR_g37898 Chara braunii HOM05D000019 ORTHO05D000048 7.6e-26 124.8 586 23.7
Migut.B00336 Erythranthe guttata HOM05D005412 ORTHO05D006096 7.1e-24 118.2 312 30.4
CBR_g37896 Chara braunii HOM05D012618 ORTHO05D000497 1.5e-18 100.5 125 48.0
Rhsim11G0175200 Rhododendron simsii HOM05D063897 ORTHO05D006096 1.9e-16 93.6 104 50.0
Migut.B00338 Erythranthe guttata HOM05D005412 ORTHO05D006096 1.0e-14 87.8 269 29.4
Hma1.2p1_0027F.1_g017200 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 7.4e-13 81.6 55 70.9
TPR.G30833 Trifolium pratense HOM05D005412 ORTHO05D006096 6.9e-11 75.1 56 71.4
CBR_g37914 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-10 74.3 100 37.0
Dinv23614 Davidia involucrata HOM05D005412 ORTHO05D006096 2.0e-10 73.6 67 50.7
Dinv23623 Davidia involucrata HOM05D005412 ORTHO05D006096 2.0e-10 73.6 67 50.7
CDE02G1280 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 3.4e-10 72.8 64 64.1
PGSC0003DMG400025793 Solanum tuberosum HOM05D005412 ORTHO05D006096 5.8e-10 72.0 66 50.0
Dinv23622 Davidia involucrata HOM05D005412 ORTHO05D006096 4.2e-08 65.9 57 54.4
CsaV3_3G018530 Cucumis sativus L. HOM05D005412 ORTHO05D006096 9.3e-08 64.7 62 45.2
SHI05372 Sapria himalayana HOM05D005412 ORTHO05D006096 9.3e-08 64.7 46 58.7


User provided reference genes

Program Settings