Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 2147.5 1076 100.0
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1718.7 1088 79.3
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1705.6 1088 78.7
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1700.3 1094 77.6
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1698.7 1094 77.2
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1698.3 1086 78.3
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1694.5 1090 77.9
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1694.1 1089 78.1
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1693.7 1092 77.3
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1692.9 1082 78.2
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1691.0 1100 77.5
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1688.3 1087 77.6
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1683.3 1085 77.1
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1682.5 1089 77.3
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1677.1 1085 76.3
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1668.7 1085 77.4
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1668.3 1084 76.2
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1667.5 1093 76.2
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1666.4 1089 75.9
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1666.4 1081 76.8
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1665.6 1091 76.4
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1662.5 1078 76.0
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1662.1 1090 76.5
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1659.4 1080 76.6
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1657.5 1078 75.8
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1657.1 1081 76.2
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1657.1 1091 76.2
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1656.3 1079 76.1
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1656.3 1078 75.7
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1656.0 1085 76.4
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1651.7 1080 76.8
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1651.7 1084 75.0
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1651.0 1085 75.8
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1650.2 1090 75.2
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1649.4 1079 75.3
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1647.9 1080 76.3
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1647.9 1079 75.9
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1645.2 1085 75.4
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1642.5 1087 74.9
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1641.7 1078 75.7
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1638.2 1093 74.5
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1638.2 1069 76.3
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1635.9 1107 74.3
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1635.2 1091 74.4
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1634.0 1106 74.0
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1633.6 1087 74.1
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1632.1 1086 74.1
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1631.3 1092 74.1
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1631.3 1092 74.8
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1630.2 1087 74.3
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1627.8 1077 75.0
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1625.5 1028 77.5
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1622.8 1093 73.6
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1620.5 1019 78.2
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1620.1 1091 74.3
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1620.1 1121 71.8
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1614.7 1128 72.5
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1614.7 1086 74.1
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1612.8 1087 73.5
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1612.8 1106 73.5
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1608.6 982 78.7
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1608.6 1028 76.9
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1607.8 1078 74.7
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1607.4 1006 77.8
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1605.9 1077 73.0
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1605.1 1004 77.2
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1604.0 1082 74.5
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1600.9 1084 73.6
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1595.9 1075 74.8
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1594.3 1182 69.3
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1590.5 1083 73.1
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1589.3 1084 73.2
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1589.3 1081 73.1
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1587.4 1081 73.1
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1586.2 1079 72.8
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1585.5 1088 73.0
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1584.3 1082 72.8
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1583.2 1082 72.6
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1577.0 1093 71.8
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1576.2 1084 72.7
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1573.1 1082 72.8
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1572.4 1073 73.1
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1570.4 1078 72.7
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1570.4 997 76.0
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1570.4 1080 72.7
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1569.7 1032 75.2
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1569.7 1080 72.8
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1569.7 1003 76.4
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1568.9 1197 67.6
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1568.5 997 76.4
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1568.1 997 76.3
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1567.4 1078 72.3
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1567.0 1097 71.3
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1565.1 1174 68.5
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1561.2 1078 73.2
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1560.0 1003 75.5
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1557.0 1077 72.2
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1556.2 1082 71.8
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1553.9 1009 75.0
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1551.6 1082 71.4
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1550.0 1147 68.4
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1546.6 1082 71.7
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1542.3 1113 70.4
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1536.9 1063 72.6
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1519.6 1082 70.1
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1479.5 1033 69.5
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1473.0 969 74.7
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1449.5 1033 68.3
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1446.8 914 77.0
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1446.0 1118 67.1
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1435.2 869 80.0
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1427.9 1047 69.7
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1425.2 1009 70.8
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1391.7 958 70.7
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1322.4 1105 63.4
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1321.2 1105 63.4
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1310.8 980 66.0
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1307.4 800 78.6
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 0.0e+00 1215.7 844 72.7
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1170.6 1056 58.0
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1157.9 747 76.0
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 0.0e+00 1120.9 1024 55.3
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1110.9 754 74.3
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 0.0e+00 1107.4 981 54.2
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1090.1 719 74.0
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 0.0e+00 1081.6 1003 54.4
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 2.9e-298 1028.9 738 69.1
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 3.1e-276 955.7 777 61.4
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 6.9e-276 954.5 881 56.4
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 4.0e-268 928.7 879 57.5
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.5e-257 892.9 596 76.0
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 1.1e-254 884.0 579 73.2
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 1.2e-243 847.4 973 45.1
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 3.2e-225 786.2 671 59.3
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 1.6e-203 714.1 646 57.6
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 3.8e-202 709.5 704 54.3
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 3.0e-194 683.3 449 75.7
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 9.5e-177 625.2 408 76.5
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.1e-172 611.7 529 61.1
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 6.2e-168 595.9 389 73.5
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 9.0e-167 592.0 503 62.0
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 4.2e-156 556.6 347 81.3
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 3.0e-154 550.4 476 61.6
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 1.6e-152 544.7 1028 35.7
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 1.6e-147 528.1 393 63.4
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 6.3e-136 489.6 329 71.7
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 3.4e-134 483.8 309 76.1
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 2.6e-126 457.6 393 60.1
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 3.4e-126 457.2 404 60.4
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 6.5e-109 399.8 989 30.0
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 1.3e-104 385.6 876 30.1
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 1.0e-98 365.9 957 28.5
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 1.8e-98 365.2 281 67.6
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 8.3e-96 356.3 227 76.7
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 4.0e-90 337.4 907 29.4
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 8.3e-80 303.1 154 89.0
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 2.4e-58 231.9 865 23.6
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 1.2e-54 219.5 222 51.8
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 1.3e-51 209.5 312 42.3
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 5.3e-50 204.1 332 34.3
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 1.1e-44 186.4 124 75.0
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 9.6e-44 183.3 216 51.9
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 8.1e-43 180.3 153 58.8
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 4.9e-40 171.0 152 55.9
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 1.9e-39 169.1 154 61.0
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 1.5e-36 159.5 461 27.1
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 2.1e-35 155.6 273 35.5
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 1.2e-33 149.8 149 52.3
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 2.0e-33 149.1 184 40.8
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 2.6e-33 148.7 134 58.2
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 1.2e-25 123.2 156 55.1
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 6.5e-24 117.5 424 24.1
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 2.7e-22 112.1 105 51.4
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 6.7e-21 107.5 258 26.7
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 8.2e-19 100.5 74 60.8
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 6.1e-14 84.3 82 54.9
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 2.2e-11 75.9 56 64.3
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 1.4e-10 73.2 50 64.0
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 2.4e-10 72.4 51 62.7
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 3.1e-10 72.0 43 74.4
MD05G1078700 Malus domestica HOM05D003855 ORTHO05D004722 1.7e-08 66.2 79 46.8
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 6.5e-08 64.3 173 32.4
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 2.1e-06 59.3 36 77.8


User provided reference genes

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