Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 7.3e-206 720.3 359 100.0
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 1.3e-151 540.0 362 71.8
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 3.7e-149 531.9 362 72.7
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 1.1e-148 530.4 361 70.1
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 1.1e-148 530.4 365 71.0
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 2.4e-148 529.3 362 69.9
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 3.4e-147 525.4 365 72.1
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 1.0e-146 523.9 365 72.1
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 1.1e-145 520.4 364 69.2
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 5.5e-145 518.1 363 70.0
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 9.4e-145 517.3 363 66.9
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 1.6e-144 516.5 367 68.4
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 2.1e-144 516.2 392 67.1
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 1.4e-143 513.5 365 70.4
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 1.8e-143 513.1 361 69.8
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.0e-143 512.3 363 67.5
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.9e-143 511.9 363 67.5
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 3.9e-143 511.9 362 68.8
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 5.1e-143 511.5 362 67.1
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 8.8e-143 510.8 361 71.2
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 1.5e-142 510.0 364 66.5
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 2.0e-142 509.6 361 68.1
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 5.7e-142 508.1 423 61.5
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 1.3e-141 506.9 361 68.7
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.3e-141 504.6 363 66.4
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 8.2e-141 504.2 361 69.0
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 1.8e-140 503.1 359 68.5
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 1.2e-139 500.4 362 66.9
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 2.0e-139 499.6 373 66.5
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 5.9e-139 498.0 362 66.0
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 1.0e-138 497.3 362 66.3
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 1.3e-138 496.9 361 67.6
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 3.8e-138 495.4 361 66.5
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 3.8e-138 495.4 359 67.1
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 8.5e-138 494.2 362 65.5
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 1.4e-137 493.4 361 67.0
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 3.2e-137 492.3 362 64.9
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 3.2e-137 492.3 361 67.0
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 2.1e-136 489.6 362 63.8
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 2.7e-136 489.2 360 65.0
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 2.3e-135 486.1 360 64.4
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 3.9e-135 485.3 359 65.5
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 8.8e-135 484.2 355 66.8
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 1.5e-134 483.4 360 64.2
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 1.5e-134 483.4 362 65.7
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 2.0e-134 483.0 363 64.7
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 5.7e-134 481.5 360 64.4
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 9.7e-134 480.7 360 64.4
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 1.7e-133 479.9 359 64.6
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 2.8e-133 479.2 359 64.3
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 2.8e-133 479.2 357 65.3
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.8e-133 479.2 386 60.6
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 4.8e-133 478.4 374 63.9
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 1.4e-132 476.9 369 62.3
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.4e-132 476.9 386 60.4
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 1.8e-132 476.5 366 64.8
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.1e-132 475.7 386 60.4
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 9.1e-132 474.2 360 63.3
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 1.5e-131 473.4 360 63.6
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 2.0e-131 473.0 369 62.3
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 2.6e-131 472.6 360 62.5
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 2.6e-131 472.6 355 63.1
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 5.9e-131 471.5 367 63.2
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 1.3e-130 470.3 351 65.5
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 1.3e-130 470.3 351 65.5
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 2.2e-130 469.5 362 62.7
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 2.2e-130 469.5 365 63.8
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 2.9e-130 469.2 362 63.0
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 3.8e-130 468.8 362 62.7
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 5.0e-130 468.4 362 63.0
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 6.5e-130 468.0 362 62.4
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 1.1e-129 467.2 360 63.3
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 1.9e-129 466.5 368 62.0
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 2.5e-129 466.1 360 61.9
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.5e-129 466.1 395 58.7
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 4.2e-129 465.3 369 62.3
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 4.2e-129 465.3 363 62.3
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 9.4e-129 464.2 320 69.7
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 9.4e-129 464.2 364 63.5
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 8.0e-128 461.1 362 63.0
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 8.0e-128 461.1 348 64.9
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 5.7e-126 454.9 380 59.2
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 9.7e-126 454.1 348 63.5
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 1.7e-125 453.4 358 60.9
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.2e-125 453.0 362 61.0
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 2.8e-125 452.6 348 64.1
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 3.5e-123 445.7 355 62.3
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 4.5e-123 445.3 370 62.4
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 5.0e-122 441.8 362 61.9
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 8.5e-122 441.0 361 61.8
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 5.5e-121 438.3 361 59.3
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 1.2e-120 437.2 361 60.4
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 2.7e-120 436.0 324 65.7
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 8.0e-120 434.5 312 68.9
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 3.0e-119 432.6 317 65.6
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 8.8e-119 431.0 397 56.2
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 7.5e-118 427.9 379 58.3
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 1.3e-117 427.2 361 57.6
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 1.8e-116 423.3 321 65.4
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 4.5e-115 418.7 360 58.9
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 4.5e-115 418.7 360 58.9
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 2.7e-112 409.5 297 68.4
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 3.6e-112 409.1 296 68.9
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 3.0e-111 406.0 362 56.1
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.7e-109 399.1 386 53.9
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 7.0e-108 394.8 300 66.7
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 7.0e-108 394.8 353 56.1
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 3.5e-107 392.5 292 63.7
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 3.8e-106 389.0 336 58.0
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 8.0e-104 381.3 287 63.8
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 4.4e-102 375.6 286 63.3
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 2.1e-96 356.7 343 50.7
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 3.6e-96 355.9 344 50.0
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 1.0e-95 354.4 362 52.8
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 1.1e-92 344.4 307 53.4
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 1.4e-92 344.0 359 52.1
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 3.2e-92 342.8 362 51.7
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 1.0e-90 337.8 335 48.4
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 3.0e-90 336.3 359 50.1
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 1.1e-89 334.3 352 52.0
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 7.3e-89 331.6 339 47.8
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 2.8e-88 329.7 363 49.0
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 6.8e-79 298.5 268 57.5
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 2.4e-60 236.9 154 73.4
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 3.3e-57 226.5 328 38.4
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 4.0e-55 219.5 137 76.6
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 1.8e-42 177.6 370 31.4
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 4.2e-36 156.4 128 62.5
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 5.1e-34 149.4 333 34.2
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.2e-32 144.1 96 68.8
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 5.0e-29 132.9 103 61.2
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.9e-28 131.0 198 38.9
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 2.5e-28 130.6 136 50.7
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 3.6e-27 126.7 116 56.0
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.1e-26 122.9 87 66.7
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.1e-25 121.7 85 65.9
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.3e-25 119.8 83 67.5
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.8e-24 117.1 85 62.4
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 2.6e-22 110.5 330 24.2
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 3.8e-21 106.7 105 52.4
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 8.5e-21 105.5 79 63.3
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.2e-20 103.6 78 62.8
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.2e-20 103.2 78 62.8
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.2e-20 103.2 101 54.5
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 4.2e-20 103.2 121 47.9
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.2e-19 101.7 78 61.5
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.6e-19 101.3 79 62.0
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 3.6e-19 100.1 90 56.7
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.6e-19 100.1 78 60.3
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.7e-19 99.8 79 60.8
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 1.0e-18 98.6 78 61.5
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.4e-18 98.2 78 60.3
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 6.7e-18 95.9 79 58.2
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.5e-17 94.7 70 61.4
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 2.0e-17 94.4 76 59.2
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 2.2e-16 90.9 104 51.9
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 4.2e-12 76.6 45 77.8
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 2.1e-11 74.3 67 58.2
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 1.4e-10 71.6 60 58.3
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 8.8e-10 68.9 56 60.7
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.0e-09 67.8 70 51.4
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 2.8e-08 63.9 52 59.6
Gohir.D09G037800 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.1e-07 62.0 43 69.8
Cc01_g09720 Coffea canephora HOM05D004259 ORTHO05D005014 9.1e-07 58.9 43 67.4
Cc02_g31720 Coffea canephora HOM05D004259 ORTHO05D005014 7.7e-06 55.8 42 64.3


User provided reference genes

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