Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0100G001 Amborella trichopoda HOM05D005929 ORTHO05D007869 0.0e+00 1371.3 710 100.0
MBI06_g04503_MAGBIO Magnolia biondii HOM05D005929 ORTHO05D007869 1.1e-248 863.6 735 63.8
TAR628G1297 Trochodendron aralioides HOM05D005929 ORTHO05D007869 1.2e-231 807.0 724 61.5
Dinv39868 Davidia involucrata HOM05D005929 ORTHO05D007869 2.0e-231 806.2 717 61.6
CSS0000081 Camellia sinensis var. sinensis HOM05D005929 ORTHO05D007869 1.7e-230 803.1 725 61.8
Manes.12G099700 Manihot esculenta HOM05D005929 ORTHO05D007869 2.1e-228 796.2 733 59.3
Nn1g05837 Nelumbo nucifera HOM05D005929 ORTHO05D007869 1.0e-227 793.9 725 61.0
GSVIVG01022148001 Vitis vinifera HOM05D005929 ORTHO05D007869 1.1e-224 783.9 714 59.2
Actinidia16503 Actinidia chinensis HOM05D005929 ORTHO05D007869 2.4e-224 782.7 719 60.6
MELO3C007555.2 Cucumis melo HOM05D005929 ORTHO05D007869 6.9e-224 781.2 713 59.3
CsaV3_6G043190 Cucumis sativus L. HOM05D005929 ORTHO05D007869 1.5e-223 780.0 713 59.5
Potri.005G137100 Populus trichocarpa HOM05D005929 ORTHO05D007869 1.5e-223 780.0 718 59.5
Phvul.003G244900 Phaseolus vulgaris HOM05D005929 ORTHO05D007869 2.2e-222 776.2 721 58.8
TPR.G19031 Trifolium pratense HOM05D005929 ORTHO05D007869 2.2e-222 776.2 724 59.4
VMungo0251G2155 Vigna mungo HOM05D005929 ORTHO05D007869 2.9e-222 775.8 722 58.6
Gorai.007G211400 Gossypium raimondii HOM05D005929 ORTHO05D007869 6.4e-222 774.6 715 59.3
Lalb_Chr05g0226621 Lupinus albus HOM05D005929 ORTHO05D007869 1.9e-221 773.1 724 59.1
MD00G1045200 Malus domestica HOM05D005929 ORTHO05D007869 1.9e-221 773.1 739 58.9
Ciclev10025029m.g Citrus clementina HOM05D005929 ORTHO05D007869 2.4e-221 772.7 720 59.6
Psat4g087280 Pisum sativum HOM05D005929 ORTHO05D007869 9.3e-221 770.8 726 58.4
ClCG01G016760 Citrullus lanatus HOM05D005929 ORTHO05D007869 2.1e-220 769.6 716 58.7
Cfa004003 Carpinus fangiana HOM05D005929 ORTHO05D007869 3.5e-220 768.8 735 59.0
Ca_21176_v3 Cicer arietinum L. HOM05D005929 ORTHO05D007869 4.6e-220 768.5 721 58.8
Sed0025648 Sechium edule HOM05D005929 ORTHO05D007869 4.6e-220 768.5 726 58.3
Prupe.7G135500 Prunus persica HOM05D005929 ORTHO05D007869 6.0e-220 768.1 731 58.4
Glyma.17G175900 Glycine max HOM05D005929 ORTHO05D007869 1.0e-219 767.3 721 59.1
RcHm_v2.0_Chr2g0105071 Rosa chinensis HOM05D005929 ORTHO05D007869 1.3e-219 766.9 729 59.1
MD02G1169700 Malus domestica HOM05D005929 ORTHO05D007869 1.8e-219 766.5 728 58.4
COL.COLO4_11392 Corchorus olitorius HOM05D005929 ORTHO05D007869 1.5e-218 763.5 717 59.0
CANSAT56G1082 Cannabis sativa HOM05D005929 ORTHO05D007869 3.3e-218 762.3 738 59.2
Sabra05G0109600 Salix brachista HOM05D005929 ORTHO05D007869 4.3e-218 761.9 718 57.9
Lj4g0006502 Lotus japonicus HOM05D005929 ORTHO05D007869 5.6e-218 761.5 714 59.1
PGR102G2065 Punica granatum HOM05D005929 ORTHO05D007869 3.6e-217 758.8 726 57.0
TWI09G0459 Tripterygium wilfordii HOM05D005929 ORTHO05D007869 4.8e-217 758.4 715 59.7
Cc07_g05890 Coffea canephora HOM05D005929 ORTHO05D007869 1.4e-216 756.9 711 59.2
Glyma.05G084300 Glycine max HOM05D005929 ORTHO05D007869 1.4e-216 756.9 723 58.1
Thecc.01G053700 Theobroma cacao HOM05D005929 ORTHO05D007869 2.4e-216 756.1 717 59.1
Duzib147G0952 Durio zibethinus HOM05D005929 ORTHO05D007869 1.2e-215 753.8 711 57.9
Gohir.A11G190800 Gossypium hirsutum HOM05D005929 ORTHO05D007869 2.6e-215 752.7 718 57.7
PSO210G3061 Papaver somniferum HOM05D005929 ORTHO05D007869 2.2e-214 749.6 725 57.4
FAN28G0152 Fragaria x ananassa HOM05D005929 ORTHO05D007869 2.9e-214 749.2 724 57.9
FAN23G0057 Fragaria x ananassa HOM05D005929 ORTHO05D007869 3.8e-214 748.8 723 57.7
Migut.H00446 Erythranthe guttata HOM05D005929 ORTHO05D007869 4.9e-214 748.4 718 57.0
FAN26G1042 Fragaria x ananassa HOM05D005929 ORTHO05D007869 8.4e-214 747.7 723 57.5
FvH4_1g15790 Fragaria vesca HOM05D005929 ORTHO05D007869 1.9e-213 746.5 724 57.9
PSO170G4100 Papaver somniferum HOM05D005929 ORTHO05D007869 2.4e-213 746.1 725 57.2
FAN19G1416 Fragaria x ananassa HOM05D005929 ORTHO05D007869 4.2e-213 745.3 724 57.7
TWI53G1997 Tripterygium wilfordii HOM05D005929 ORTHO05D007869 4.2e-213 745.3 715 57.9
CiPaw.01G019600 Carya illinoinensis HOM05D005929 ORTHO05D007869 7.9e-212 741.1 732 57.5
Gohir.D11G197600 Gossypium hirsutum HOM05D005929 ORTHO05D007869 1.5e-210 736.9 715 57.8
MSTRG.23760 Avicennia marina HOM05D005929 ORTHO05D007869 4.3e-210 735.3 713 57.5
Sc03g0001480 Simmondsia chinensis HOM05D005929 ORTHO05D007869 2.8e-209 732.6 717 57.2
CiPaw.02G008900 Carya illinoinensis HOM05D005929 ORTHO05D007869 1.1e-208 730.7 726 56.1
Gorai.003G022900 Gossypium raimondii HOM05D005929 ORTHO05D007869 6.9e-208 728.0 711 56.8
Gohir.D03G021300 Gossypium hirsutum HOM05D005929 ORTHO05D007869 1.3e-206 723.8 711 57.1
Gohir.A02G159200 Gossypium hirsutum HOM05D005929 ORTHO05D007869 2.2e-206 723.0 711 56.5
arahy.Tifrunner.gnm1.ann1.UKY0C7 Arachis hypogaea HOM05D005929 ORTHO05D007869 4.9e-206 721.8 805 53.0
Hund13561 Selenicereus undatus HOM05D005929 ORTHO05D007869 9.3e-205 717.6 731 56.0
DCAR_010904 Daucus carota HOM05D005929 ORTHO05D007869 3.9e-203 712.2 728 55.4
Lj4A143G78 Lonicera japonica HOM05D005929 ORTHO05D007869 6.7e-203 711.4 720 56.8
EL10Ac6g15157 Beta vulgaris HOM05D005929 ORTHO05D007869 5.7e-202 708.4 744 56.0
Lsat_1_v5_gn_4_168021 Lactuca sativa HOM05D005929 ORTHO05D007869 7.4e-202 708.0 707 56.7
Eucgr.H02007 Eucalyptus grandis HOM05D005929 ORTHO05D007869 2.8e-201 706.1 733 55.8
HPP92_009382 Vanilla planifolia HOM05D005929 ORTHO05D007869 3.7e-201 705.7 720 55.4
SGA_v2.0_scaffold15G07274 Striga asiatica HOM05D005929 ORTHO05D007869 1.1e-200 704.1 712 55.2
THA.LOC104821272 Tarenaya hassleriana HOM05D005929 ORTHO05D007869 2.4e-200 703.0 725 54.9
Oeu039068.2 Olea europaea HOM05D005929 ORTHO05D007869 3.1e-200 702.6 748 54.4
Rhsim08G0101600 Rhododendron simsii HOM05D005929 ORTHO05D007869 5.3e-200 701.8 946 46.7
Atru.chr3.351 Acer truncatum HOM05D005929 ORTHO05D007869 2.5e-197 693.0 638 59.4
PGSC0003DMG400015776 Solanum tuberosum HOM05D005929 ORTHO05D007869 2.5e-197 693.0 733 55.5
Nitab4.5_0010605g0010 Nicotiana tabacum HOM05D005929 ORTHO05D007869 5.5e-197 691.8 729 54.6
Aqoxy5G01270 Aquilegia oxysepala HOM05D005929 ORTHO05D007869 7.2e-197 691.4 714 55.9
HanXRQChr15g0490721 Helianthus annuus HOM05D005929 ORTHO05D007869 7.9e-196 688.0 710 56.2
Peaxi162Scf00964g00160 Petunia axillaris HOM05D005929 ORTHO05D007869 5.1e-195 685.3 724 53.9
CAN.G836.71 Capsicum annuum HOM05D005929 ORTHO05D007869 1.1e-194 684.1 718 55.3
ECA232G2456 Erigeron canadensis HOM05D005929 ORTHO05D007869 1.5e-194 683.7 713 55.1
Thhalv10003742m.g Eutrema salsugineum HOM05D005929 ORTHO05D007869 1.9e-194 683.3 732 52.2
Sopen02g035300 Solanum pennellii HOM05D005929 ORTHO05D007869 5.7e-194 681.8 733 55.1
Os10g0382300 Oryza sativa ssp. japonica HOM05D005929 ORTHO05D007869 1.3e-193 680.6 727 54.7
Solyc02g090650.4 Solanum lycopersicum HOM05D005929 ORTHO05D007869 8.2e-193 677.9 729 54.9
Sp2g29870 Schrenkiella parvula HOM05D005929 ORTHO05D007869 9.1e-192 674.5 721 51.9
vmacro17944 Vaccinium macrocarpon HOM05D005929 ORTHO05D007869 2.5e-189 666.4 929 45.3
AL8G44640 Arabidopsis lyrata HOM05D005929 ORTHO05D007869 5.5e-189 665.2 728 52.9
C07p24970 Brassica napus HOM05D005929 ORTHO05D007869 2.1e-188 663.3 720 51.4
Aa31LG1G15360 Aethionema arabicum HOM05D005929 ORTHO05D007869 7.9e-188 661.4 770 49.4
BcaC06g34750 Brassica carinata HOM05D005929 ORTHO05D007869 1.4e-187 660.6 720 51.2
Zm00001eb223840 Zea mays HOM05D005929 ORTHO05D007869 1.4e-187 660.6 734 52.0
BraA07t29438Z Brassica rapa HOM05D005929 ORTHO05D007869 1.7e-185 653.7 728 51.1
Nitab4.5_0000310g0090 Nicotiana tabacum HOM05D005929 ORTHO05D007869 2.2e-185 653.3 732 52.6
Carub.0008s2770 Capsella rubella HOM05D005929 ORTHO05D007869 4.8e-185 652.1 728 51.6
unitig_899.g14965 Utricularia gibba HOM05D005929 ORTHO05D007869 3.1e-184 649.4 745 51.4
A07p17110 Brassica napus HOM05D005929 ORTHO05D007869 4.1e-184 649.0 729 51.0
BolC7t43027H Brassica oleracea HOM05D005929 ORTHO05D007869 3.4e-183 646.0 744 49.5
BcaB02g09988 Brassica carinata HOM05D005929 ORTHO05D007869 3.2e-181 639.4 722 50.6
QL06p041881 Quercus lobata HOM05D005929 ORTHO05D007869 3.2e-181 639.4 598 58.9
Hma1.2p1_0200F.1_g086000 Hydrangea macrophylla HOM05D005929 ORTHO05D007869 2.2e-169 600.1 573 59.0
AUR62003860 Chenopodium quinoa HOM05D005929 ORTHO05D007869 1.1e-168 597.8 624 54.0
AUR62001947 Chenopodium quinoa HOM05D005929 ORTHO05D007869 1.8e-163 580.5 620 53.1
Ca_22183_v3 Cicer arietinum L. HOM05D005929 ORTHO05D007869 8.3e-161 571.6 587 55.5
Cpa.g.sc55.172 Carica papaya HOM05D005929 ORTHO05D007869 1.7e-158 563.9 554 58.8
Ah.03g144730 Amaranthus hybridus HOM05D005929 ORTHO05D007869 4.5e-151 539.3 598 53.8
Duzib264G1189 Durio zibethinus HOM05D005929 ORTHO05D007869 9.5e-149 531.6 708 46.3
CARHR280890 Cardamine hirsuta HOM05D005929 ORTHO05D007869 2.7e-143 513.5 597 49.4
Pp3c4_14260 Physcomitrium patens HOM05D005929 ORTHO05D007869 2.3e-142 510.4 765 43.3
Lalb_Chr09g0333751 Lupinus albus HOM05D005929 ORTHO05D007869 1.2e-140 504.6 541 52.9
Mapoly0148s0013 Marchantia polymorpha HOM05D005929 ORTHO05D007869 1.2e-132 478.0 787 39.5
AT5G66810 Arabidopsis thaliana HOM05D005929 ORTHO05D007869 6.4e-129 465.7 518 51.5
SMO116G0373 Selaginella moellendorffii HOM05D005929 ORTHO05D007869 6.9e-115 419.1 710 37.3
CDE10G0504 Ceratophyllum demersum HOM05D005929 ORTHO05D007869 1.9e-96 357.8 444 49.1
SalBow1G6022 Salvia bowleyana HOM05D005929 ORTHO05D007869 4.0e-91 340.1 296 60.1
CDE10G0678 Ceratophyllum demersum HOM05D005929 ORTHO05D007869 5.5e-88 329.7 274 62.4
SEGI_10908 Sequoiadendron giganteum HOM05D005929 ORTHO05D000002 2.5e-72 277.7 439 41.5
Haze_15421 Corylus avellana HOM05D005929 ORTHO05D007869 4.2e-72 276.9 472 41.9
ATR0833G001 Amborella trichopoda HOM05D005929 ORTHO05D007869 2.5e-56 224.6 126 98.4
Hma1.2p1_0200F.1_g086010 Hydrangea macrophylla HOM05D005929 ORTHO05D007869 5.2e-54 216.9 311 45.3
PSO782G4943 Papaver somniferum HOM05D005929 ORTHO05D007869 7.5e-53 213.0 181 61.3
RcHm_v2.0_Chr7g0235891 Rosa chinensis HOM05D005929 ORTHO05D007869 2.4e-51 208.0 199 54.3
Lalb_Chr09g0333761 Lupinus albus HOM05D005929 ORTHO05D007869 9.8e-45 186.0 153 66.7
DCAR_001419 Daucus carota HOM05D005929 ORTHO05D007869 5.9e-42 176.8 284 40.5
PSO339G4212 Papaver somniferum HOM05D005929 ORTHO05D007869 6.6e-41 173.3 154 56.5
Dinv29975 Davidia involucrata HOM05D005929 ORTHO05D007869 6.3e-36 156.8 370 35.4
QL06p041873 Quercus lobata HOM05D005929 ORTHO05D007869 9.2e-35 152.9 127 68.5
MD15G1282100 Malus domestica HOM05D005929 ORTHO05D007869 6.8e-30 136.7 95 70.5
Cpa.g.sc55.170 Carica papaya HOM05D005929 ORTHO05D007869 1.5e-29 135.6 133 59.4
MD15G1282000 Malus domestica HOM05D005929 ORTHO05D007869 6.4e-28 130.2 107 65.4
Lsat_1_v5_gn_2_14601 Lactuca sativa HOM05D005929 ORTHO05D029973 8.0e-23 113.2 149 47.7
MBI08_g05057_MAGBIO Magnolia biondii HOM05D005929 ORTHO05D029973 4.9e-20 104.0 113 48.7
QL06p041946 Quercus lobata HOM05D005929 ORTHO05D007869 1.8e-14 85.5 145 42.1
Cre01.g029050 Chlamydomonas reinhardtii HOM05D003178 ORTHO05D003636 7.3e-08 63.5 138 29.7
Gorai.009G171100 Gossypium raimondii HOM05D003178 ORTHO05D003636 2.1e-07 62.0 138 29.7
Pp3c10_21900 Physcomitrium patens HOM05D003178 ORTHO05D003636 2.8e-07 61.6 141 29.8
Lalb_Chr15g0089941 Lupinus albus HOM05D003178 ORTHO05D003636 4.7e-07 60.8 143 28.0
Cc02_g12740 Coffea canephora HOM05D003178 ORTHO05D003636 2.4e-06 58.5 138 27.5
ECA236G3980 Erigeron canadensis HOM05D003178 ORTHO05D003636 3.1e-06 58.2 138 27.5
Migut.M01166 Erythranthe guttata HOM05D003178 ORTHO05D003636 3.1e-06 58.2 83 37.3
HanXRQChr04g0124041 Helianthus annuus HOM05D003178 ORTHO05D003636 3.1e-06 58.2 138 27.5
Lsat_1_v5_gn_7_19480 Lactuca sativa HOM05D003178 ORTHO05D003636 3.1e-06 58.2 138 27.5
Lj2A283G69 Lonicera japonica HOM05D003178 ORTHO05D003636 3.1e-06 58.2 138 27.5
MD05G1322300 Malus domestica HOM05D003178 ORTHO05D003636 3.1e-06 58.2 138 27.5
MD10G1300300 Malus domestica HOM05D003178 ORTHO05D003636 3.1e-06 58.2 138 27.5
AT1G61150 Arabidopsis thaliana HOM05D003178 ORTHO05D003636 4.0e-06 57.8 138 27.5
AagrBONN_evm.TU.Sc2ySwM_228.5276 Anthoceros agrestis HOM05D003178 ORTHO05D003636 5.2e-06 57.4 138 29.0
arahy.Tifrunner.gnm1.ann1.7YHY0R Arachis hypogaea HOM05D003178 ORTHO05D003636 5.2e-06 57.4 138 26.8
arahy.Tifrunner.gnm1.ann1.DE500R Arachis hypogaea HOM05D003178 ORTHO05D003636 5.2e-06 57.4 138 26.8
CAN.G1398.5 Capsicum annuum HOM05D003178 ORTHO05D003636 5.2e-06 57.4 138 27.5
CAN.G289.31 Capsicum annuum HOM05D003178 ORTHO05D003636 5.2e-06 57.4 138 26.8
CiPaw.09G053600 Carya illinoinensis HOM05D003178 ORTHO05D003636 5.2e-06 57.4 138 26.8
Gohir.D09G071300 Gossypium hirsutum HOM05D003178 ORTHO05D003636 5.2e-06 57.4 138 26.1
Peaxi162Scf00137g00312 Petunia axillaris HOM05D003178 ORTHO05D003636 5.2e-06 57.4 138 26.1
Potri.011G046200 Populus trichocarpa HOM05D003178 ORTHO05D003636 5.2e-06 57.4 138 27.5
Sabra11G0032000 Salix brachista HOM05D003178 ORTHO05D003636 5.2e-06 57.4 138 27.5
AagrBONN_evm.TU.Sc2ySwM_117.2895 Anthoceros agrestis HOM05D003178 ORTHO05D003636 6.8e-06 57.0 85 37.6
Ca_00301_v3 Cicer arietinum L. HOM05D003178 ORTHO05D003636 6.8e-06 57.0 138 26.8
Gohir.D10G023800 Gossypium hirsutum HOM05D003178 ORTHO05D003636 6.8e-06 57.0 138 26.1
Carub.0002s0401 Capsella rubella HOM05D003178 ORTHO05D003636 8.9e-06 56.6 138 26.8
Gohir.A05G163100 Gossypium hirsutum HOM05D003178 ORTHO05D003636 8.9e-06 56.6 138 26.8
HanXRQChr09g0263961 Helianthus annuus HOM05D003178 ORTHO05D003636 8.9e-06 56.6 138 26.8
Manes.16G023600 Manihot esculenta HOM05D003178 ORTHO05D003636 8.9e-06 56.6 138 26.1
Nitab4.5_0001820g0100 Nicotiana tabacum HOM05D003178 ORTHO05D003636 8.9e-06 56.6 138 26.8
Nitab4.5_0007319g0040 Nicotiana tabacum HOM05D003178 ORTHO05D003636 8.9e-06 56.6 138 26.8
TWI63G1607 Tripterygium wilfordii HOM05D003178 ORTHO05D003636 8.9e-06 56.6 138 26.8
vmacro15881 Vaccinium macrocarpon HOM05D003178 ORTHO05D003636 8.9e-06 56.6 138 26.8


User provided reference genes

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