Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 0.0e+00 1640.9 811 100.0
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 0.0e+00 1094.0 799 69.0
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 0.0e+00 1076.2 810 68.0
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 1.1e-311 1072.8 794 68.6
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 1.3e-306 1056.2 796 66.7
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 2.8e-306 1055.0 833 66.1
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 2.6e-299 1031.9 801 66.4
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 2.9e-295 1018.5 795 65.4
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 5.0e-295 1017.7 805 64.6
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 6.5e-295 1017.3 792 65.5
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 1.1e-294 1016.5 798 65.2
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 1.1e-294 1016.5 827 64.2
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 1.4e-294 1016.1 792 65.5
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 7.2e-294 1013.8 808 64.5
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 9.4e-294 1013.4 792 66.5
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 1.6e-293 1012.7 816 63.7
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 2.1e-293 1012.3 795 65.2
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 2.1e-293 1012.3 794 65.9
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 2.7e-293 1011.9 796 66.2
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 6.1e-293 1010.7 815 63.7
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 6.1e-293 1010.7 791 67.3
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 5.2e-292 1007.7 806 63.6
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 2.0e-291 1005.7 792 65.3
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 4.4e-291 1004.6 806 63.5
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 2.8e-290 1001.9 795 65.2
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 8.2e-290 1000.3 798 65.8
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 1.1e-289 1000.0 806 63.3
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 2.4e-289 998.8 809 62.8
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 5.3e-289 997.7 805 65.5
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 2.0e-288 995.7 801 64.4
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 2.6e-288 995.3 804 63.9
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 3.5e-288 995.0 803 64.4
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.3e-287 993.0 804 65.0
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 2.9e-287 991.9 793 64.7
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 5.0e-287 991.1 805 65.2
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 1.5e-286 989.6 804 64.8
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.5e-286 989.6 804 64.7
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 1.9e-286 989.2 805 62.6
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 3.2e-286 988.4 805 63.6
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 5.5e-286 987.6 805 62.2
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 7.2e-286 987.3 792 65.4
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 7.2e-286 987.3 805 62.7
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 1.6e-285 986.1 810 64.8
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 3.6e-285 984.9 795 64.5
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 6.1e-285 984.2 806 63.0
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 6.1e-285 984.2 807 63.4
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 1.4e-284 983.0 792 65.3
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 1.4e-284 983.0 795 62.8
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 1.4e-284 983.0 795 62.9
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 2.8e-282 975.3 817 63.2
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 1.1e-281 973.4 817 63.0
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.1e-281 973.4 817 63.0
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 9.1e-281 970.3 794 64.1
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 2.0e-280 969.1 821 63.0
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 2.7e-280 968.8 795 62.6
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 2.7e-280 968.8 814 63.1
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 2.9e-279 965.3 805 62.0
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 1.5e-278 963.0 801 61.7
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.9e-278 962.6 820 62.1
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 5.5e-278 961.1 804 63.2
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 1.0e-276 956.8 811 61.4
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 1.8e-276 956.1 820 62.1
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 8.8e-276 953.7 805 60.4
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 1.2e-275 953.4 796 62.1
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 7.5e-275 950.7 804 62.8
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 1.7e-274 949.5 807 62.0
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 2.8e-274 948.7 792 62.9
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.8e-273 946.0 803 62.3
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 2.4e-273 945.7 807 61.5
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 4.1e-273 944.9 813 60.0
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 5.4e-273 944.5 799 62.3
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 9.1e-273 943.7 806 61.3
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.6e-272 943.0 795 62.9
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 7.7e-272 940.6 813 59.8
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 1.7e-271 939.5 806 61.7
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.5e-270 936.4 803 61.8
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 4.2e-270 934.9 806 61.5
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 1.6e-269 932.9 791 61.7
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 8.0e-269 930.6 801 61.8
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 6.8e-268 927.5 844 58.5
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 2.8e-266 922.2 807 60.1
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 2.4e-265 919.1 811 58.3
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 1.2e-264 916.8 758 63.9
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 1.2e-264 916.8 807 60.2
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 2.0e-264 916.0 799 60.6
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 5.9e-264 914.4 802 59.1
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 2.3e-263 912.5 801 59.4
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 2.3e-263 912.5 860 56.7
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 2.3e-263 912.5 809 58.7
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 2.5e-262 909.1 807 57.9
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 2.5e-262 909.1 805 58.5
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 4.3e-262 908.3 804 59.5
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 4.3e-262 908.3 802 59.1
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 1.6e-261 906.4 810 57.7
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 1.6e-261 906.4 805 58.5
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 2.1e-261 906.0 802 58.2
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 4.7e-261 904.8 800 58.9
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 6.1e-261 904.4 813 59.7
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 8.0e-261 904.0 803 58.9
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 1.8e-260 902.9 801 59.3
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 2.3e-260 902.5 803 58.8
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 5.2e-260 901.4 808 58.2
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 6.8e-260 901.0 809 58.2
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 2.6e-259 899.0 797 58.6
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 5.8e-259 897.9 799 58.6
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 7.5e-259 897.5 802 59.4
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 7.5e-259 897.5 796 60.2
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 1.3e-258 896.7 804 58.5
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 2.9e-258 895.6 801 58.3
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 4.9e-258 894.8 804 57.6
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 4.9e-258 894.8 814 57.7
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 8.3e-258 894.0 790 59.1
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 3.5e-256 888.6 790 58.7
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 3.5e-256 888.6 801 58.6
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 7.8e-256 887.5 791 59.0
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 2.3e-255 885.9 805 57.6
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 5.0e-255 884.8 796 58.0
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 8.0e-253 877.5 773 59.0
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 1.2e-251 873.6 794 58.3
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 6.4e-250 867.8 820 57.0
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 4.1e-249 865.1 800 57.6
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 9.5e-246 854.0 780 56.4
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 2.0e-243 846.3 873 54.6
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 9.9e-243 844.0 748 60.7
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 1.2e-240 837.0 803 57.8
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 3.3e-238 828.9 804 55.1
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 6.2e-237 824.7 819 56.4
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 2.9e-234 815.8 758 59.0
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 9.2e-233 810.8 784 55.7
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 4.7e-229 798.5 802 55.0
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 6.9e-228 794.7 807 53.3
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 1.7e-223 780.0 792 55.2
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 2.3e-223 779.6 792 55.2
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 2.8e-221 772.7 807 52.9
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 2.3e-215 753.1 730 57.9
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 3.2e-209 732.6 795 51.9
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 4.9e-202 708.8 715 55.4
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.9e-198 696.8 754 50.9
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 2.0e-195 686.8 778 48.1
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 1.2e-184 651.0 814 45.9
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 7.7e-179 631.7 806 43.9
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 8.0e-176 621.7 782 44.0
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 1.1e-172 611.3 819 43.3
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 1.0e-167 594.7 793 44.9
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 1.1e-161 574.7 814 40.3
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 1.6e-152 544.3 413 67.3
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 6.3e-149 532.3 471 59.7
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 1.5e-142 511.1 447 58.2
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 1.5e-142 511.1 447 58.2
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 7.3e-137 492.3 574 46.9
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 3.5e-131 473.4 432 58.3
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 6.2e-128 462.6 282 78.7
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 4.0e-119 433.3 463 54.6
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 7.3e-113 412.5 258 76.7
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.3e-109 401.7 430 49.5
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 7.6e-102 375.9 756 35.1
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.2e-78 298.9 272 56.2
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 7.7e-62 243.0 783 28.4
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 4.8e-56 223.8 285 45.3
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 9.4e-52 209.5 190 56.8
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 3.1e-47 194.5 142 69.0
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 4.9e-40 170.6 149 62.4
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.5e-36 158.3 95 71.6
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 2.1e-27 128.6 80 73.8
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.1e-23 116.3 161 39.1
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.9e-20 105.5 131 38.9
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 8.6e-13 80.1 55 70.9
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 9.5e-12 76.6 103 40.8
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 1.2e-09 69.7 46 71.7
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 5.8e-09 67.4 39 74.4
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 2.4e-07 62.0 73 43.8


User provided reference genes

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