Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0099G072 Amborella trichopoda HOM05D007181 ORTHO05D008722 1.1e-52 209.9 119 100.0
CSS0010421 Camellia sinensis var. sinensis HOM05D007181 ORTHO05D008722 1.1e-17 93.6 77 54.5
MBI13_g01691_MAGBIO Magnolia biondii HOM05D007181 ORTHO05D008722 1.1e-17 93.6 77 64.9
CSS0018066 Camellia sinensis var. sinensis HOM05D007181 ORTHO05D008722 1.6e-16 89.7 77 53.2
Aqoxy7G04176 Aquilegia oxysepala HOM05D007181 ORTHO05D008722 1.8e-15 86.3 112 43.8
HPP92_028259 Vanilla planifolia HOM05D007181 ORTHO05D008722 2.3e-15 85.9 101 43.6
Actinidia19968 Actinidia chinensis HOM05D007181 ORTHO05D008722 3.0e-15 85.5 77 51.9
Nn8g40634 Nelumbo nucifera HOM05D007181 ORTHO05D008722 2.5e-14 82.4 72 69.4
Hma1.2p1_0760F.1_g214120 Hydrangea macrophylla HOM05D007181 ORTHO05D008722 4.3e-14 81.6 134 38.1
Nn8g40635 Nelumbo nucifera HOM05D007181 ORTHO05D008722 1.3e-13 80.1 72 69.4
CDE06G2554 Ceratophyllum demersum HOM05D007181 ORTHO05D008722 1.7e-13 79.7 83 60.2
PSO210G2677 Papaver somniferum HOM05D007181 ORTHO05D008722 3.7e-13 78.6 98 43.9
Nitab4.5_0003555g0080 Nicotiana tabacum HOM05D007181 ORTHO05D008722 6.3e-13 77.8 75 61.3
Dinv32881 Davidia involucrata HOM05D007181 ORTHO05D008722 8.2e-13 77.4 145 44.1
PGSC0003DMG400004278 Solanum tuberosum HOM05D007181 ORTHO05D008722 1.1e-12 77.0 75 54.7
Peaxi162Scf00146g10111 Petunia axillaris HOM05D007181 ORTHO05D008722 1.4e-12 76.6 75 62.7
CAN.G575.12 Capsicum annuum HOM05D007181 ORTHO05D008722 2.4e-12 75.9 76 61.8
PSO210G2070 Papaver somniferum HOM05D007181 ORTHO05D008722 3.1e-12 75.5 98 51.0
Lj2P1163T10 Lonicera japonica HOM05D007181 ORTHO05D008722 4.1e-12 75.1 78 44.9
GSVIVG01003131001 Vitis vinifera HOM05D007181 ORTHO05D008722 9.1e-12 73.9 116 44.8
Os11g0616200 Oryza sativa ssp. japonica HOM05D007181 ORTHO05D008722 1.5e-11 73.2 74 68.9
CANSAT25G0029 Cannabis sativa HOM05D007181 ORTHO05D008722 2.0e-11 72.8 73 46.6
Hma1.2p1_1332F.1_g276040 Hydrangea macrophylla HOM05D007181 ORTHO05D008722 2.0e-11 72.8 121 38.0
Haze_04636 Corylus avellana HOM05D007181 ORTHO05D008722 2.6e-11 72.4 122 38.5
Haze_04637 Corylus avellana HOM05D000129 ORTHO05D000144 2.6e-11 72.4 122 38.5
Gohir.D08G205700 Gossypium hirsutum HOM05D007181 ORTHO05D008722 2.6e-11 72.4 70 61.4
Gorai.004G217700 Gossypium raimondii HOM05D007181 ORTHO05D008722 2.6e-11 72.4 70 55.7
Solyc12g100320.2 Solanum lycopersicum HOM05D007181 ORTHO05D008722 2.6e-11 72.4 75 49.3
Sopen12g034950 Solanum pennellii HOM05D007181 ORTHO05D008722 2.6e-11 72.4 75 49.3
vmacro02617 Vaccinium macrocarpon HOM05D007181 ORTHO05D008722 2.6e-11 72.4 71 49.3
EL10Ac5g10486 Beta vulgaris HOM05D007181 ORTHO05D008722 3.4e-11 72.0 77 45.5
BcaB03g13697 Brassica carinata HOM05D007181 ORTHO05D008722 3.4e-11 72.0 99 53.5
BraA09t40915Z Brassica rapa HOM05D007181 ORTHO05D008722 5.9e-11 71.2 109 42.2
AUR62032277 Chenopodium quinoa HOM05D007181 ORTHO05D008722 5.9e-11 71.2 77 45.5
Oeu025775.1 Olea europaea HOM05D007181 ORTHO05D008722 7.7e-11 70.9 71 63.4
arahy.Tifrunner.gnm1.ann1.M9RGYA Arachis hypogaea HOM05D007181 ORTHO05D008722 1.0e-10 70.5 115 36.5
Gorai.007G100900 Gossypium raimondii HOM05D007181 ORTHO05D008722 1.0e-10 70.5 126 45.2
Sp5g00160 Schrenkiella parvula HOM05D007181 ORTHO05D008722 1.0e-10 70.5 109 48.6
BcaC07g40807 Brassica carinata HOM05D007181 ORTHO05D008722 1.3e-10 70.1 110 39.1
C08p38020 Brassica napus HOM05D007181 ORTHO05D008722 1.3e-10 70.1 110 39.1
BolC8t51376H Brassica oleracea HOM05D007181 ORTHO05D008722 1.3e-10 70.1 110 39.1
Gohir.D11G094500 Gossypium hirsutum HOM05D007181 ORTHO05D008722 1.3e-10 70.1 126 45.2
Rhsim13G0029700 Rhododendron simsii HOM05D007181 ORTHO05D008722 1.3e-10 70.1 74 44.6
A09p55080 Brassica napus HOM05D007181 ORTHO05D008722 1.7e-10 69.7 98 41.8
AUR62011964 Chenopodium quinoa HOM05D007181 ORTHO05D008722 2.2e-10 69.3 132 35.6
Ciclev10022317m.g Citrus clementina HOM05D007181 ORTHO05D008722 2.2e-10 69.3 124 38.7
MD03G1257200 Malus domestica HOM05D007181 ORTHO05D008722 2.2e-10 69.3 122 44.3
SEGI_03897 Sequoiadendron giganteum HOM05D007181 ORTHO05D008722 2.9e-10 68.9 78 56.4
Atru.chr5.1530 Acer truncatum HOM05D007181 ORTHO05D008722 6.5e-10 67.8 121 41.3
Gohir.A05G078500 Gossypium hirsutum HOM05D000144 ORTHO05D008722 6.5e-10 67.8 70 45.7
Thhalv10006272m.g Eutrema salsugineum HOM05D007181 ORTHO05D008722 8.5e-10 67.4 109 47.7
Ah.11g050140 Amaranthus hybridus HOM05D007181 ORTHO05D008722 1.1e-09 67.0 79 43.0
Phvul.001G155300 Phaseolus vulgaris HOM05D007181 ORTHO05D008722 1.4e-09 66.6 69 59.4
CiPaw.08G110300 Carya illinoinensis HOM05D007181 ORTHO05D008722 1.9e-09 66.2 128 43.8
SGA_v2.0_scaffold1G00542 Striga asiatica HOM05D007181 ORTHO05D008722 1.9e-09 66.2 72 62.5
Gohir.A11G090066 Gossypium hirsutum HOM05D007181 ORTHO05D008722 4.2e-09 65.1 70 61.4
Prupe.8G234100 Prunus persica HOM05D007181 ORTHO05D008722 4.2e-09 65.1 77 48.1
Cc00_g18800 Coffea canephora HOM05D007181 ORTHO05D008722 5.5e-09 64.7 75 60.0
Lj1g0009574 Lotus japonicus HOM05D007181 ORTHO05D008722 7.2e-09 64.3 69 46.4
FvH4_2g22890 Fragaria vesca HOM05D007181 ORTHO05D008722 9.4e-09 63.9 81 50.6
FAN24G0107 Fragaria x ananassa HOM05D007181 ORTHO05D008722 9.4e-09 63.9 81 50.6
Duzib211G0516 Durio zibethinus HOM05D007181 ORTHO05D008722 1.2e-08 63.5 70 62.9
Potri.002G047400 Populus trichocarpa HOM05D007181 ORTHO05D008722 1.2e-08 63.5 76 42.1
RcHm_v2.0_Chr6g0289821 Rosa chinensis HOM05D007181 ORTHO05D008722 1.2e-08 63.5 95 32.6
Sabra02G0038300 Salix brachista HOM05D007181 ORTHO05D008722 1.2e-08 63.5 76 43.4
Gohir.A08G187400 Gossypium hirsutum HOM05D007181 ORTHO05D008722 2.7e-08 62.4 70 60.0
VMungo1383G2224 Vigna mungo HOM05D007181 ORTHO05D008722 3.6e-08 62.0 69 56.5
SalBow4G0298 Salvia bowleyana HOM05D007181 ORTHO05D008722 4.7e-08 61.6 86 54.7
SalBow4G3342 Salvia bowleyana HOM05D007181 ORTHO05D008722 4.7e-08 61.6 86 54.7
SalBow6G6987 Salvia bowleyana HOM05D007181 ORTHO05D008722 4.7e-08 61.6 86 54.7
MELO3C001156.2 Cucumis melo HOM05D007181 ORTHO05D008722 6.1e-08 61.2 44 63.6
Sc05g0001150 Simmondsia chinensis HOM05D007181 ORTHO05D008722 6.1e-08 61.2 77 57.1
BcaC07g42693 Brassica carinata HOM05D007181 ORTHO05D008722 1.0e-07 60.5 109 37.6
Lsat_1_v5_gn_5_185100 Lactuca sativa HOM05D007181 ORTHO05D008722 1.0e-07 60.5 76 42.1
Thecc.01G270500 Theobroma cacao HOM05D007181 ORTHO05D008722 1.8e-07 59.7 70 50.0
Zm00001eb166760 Zea mays HOM05D007181 ORTHO05D008722 5.1e-07 58.2 76 56.6
AL5G46250 Arabidopsis lyrata HOM05D007181 ORTHO05D008722 6.7e-07 57.8 72 50.0
HanXRQChr01g0005991 Helianthus annuus HOM05D007181 ORTHO05D008722 8.8e-07 57.4 72 45.8
Cpa.g.sc52.129 Carica papaya HOM05D007181 ORTHO05D008722 1.1e-06 57.0 102 44.1
Medtr7g095740 Medicago truncatula HOM05D007181 ORTHO05D008722 1.1e-06 57.0 131 43.5
Sed0014767 Sechium edule HOM05D007181 ORTHO05D008722 1.5e-06 56.6 78 55.1
COL.COLO4_09179 Corchorus olitorius HOM05D007181 ORTHO05D008722 2.0e-06 56.2 36 61.1
Manes.05G082200 Manihot esculenta HOM05D007181 ORTHO05D008722 3.3e-06 55.5 41 53.7
ClCG07G000510 Citrullus lanatus HOM05D007181 ORTHO05D008722 4.4e-06 55.1 78 55.1
AT3G63390 Arabidopsis thaliana HOM05D007181 ORTHO05D008722 5.7e-06 54.7 78 52.6
CsaV3_2G013840 Cucumis sativus L. HOM05D007181 ORTHO05D008722 5.7e-06 54.7 41 58.5
QL12p042395 Quercus lobata HOM05D007181 ORTHO05D008722 7.4e-06 54.3 117 43.6


User provided reference genes

Program Settings