Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0090G032 Amborella trichopoda HOM05D004805 ORTHO05D005756 9.0e-139 496.9 247 100.0
TAR626G0989 Trochodendron aralioides HOM05D004805 ORTHO05D005756 1.1e-91 340.5 218 77.5
Dinv10336 Davidia involucrata HOM05D004805 ORTHO05D005756 4.5e-90 335.1 221 74.7
Prupe.3G149500 Prunus persica HOM05D004805 ORTHO05D005756 1.1e-88 330.5 227 70.0
PSO832G0973 Papaver somniferum HOM05D004805 ORTHO05D005756 1.5e-88 330.1 217 73.7
Nn1g07520 Nelumbo nucifera HOM05D004805 ORTHO05D005756 3.2e-88 328.9 223 74.0
GSVIVG01014691001 Vitis vinifera HOM05D004805 ORTHO05D005756 3.2e-88 328.9 223 72.6
LjContig00081g0004731 Lotus japonicus HOM05D004805 ORTHO05D005756 4.2e-88 328.6 221 71.9
Atru.chr13.2016 Acer truncatum HOM05D004805 ORTHO05D005756 9.4e-88 327.4 223 70.4
MD05G1261800 Malus domestica HOM05D004805 ORTHO05D005756 1.2e-87 327.0 223 70.9
Lalb_Chr09g0322761 Lupinus albus HOM05D004805 ORTHO05D005756 2.1e-87 326.2 221 71.5
FvH4_3g11630 Fragaria vesca HOM05D004805 ORTHO05D005756 3.6e-87 325.5 223 69.1
Actinidia30402 Actinidia chinensis HOM05D004805 ORTHO05D005756 4.7e-87 325.1 220 73.2
Glyma.14G013400 Glycine max HOM05D004805 ORTHO05D005756 6.1e-87 324.7 228 70.2
Atru.chr9.1539 Acer truncatum HOM05D004805 ORTHO05D005756 8.0e-87 324.3 223 70.9
Cfa020188 Carpinus fangiana HOM05D004805 ORTHO05D005756 8.0e-87 324.3 218 72.5
Glyma.17G150300 Glycine max HOM05D004805 ORTHO05D005756 8.0e-87 324.3 228 70.2
THA.LOC104811668 Tarenaya hassleriana HOM05D004805 ORTHO05D005756 1.4e-86 323.6 225 68.4
Ca_06397_v3 Cicer arietinum L. HOM05D004805 ORTHO05D005756 1.8e-86 323.2 221 70.1
Duzib268G0855 Durio zibethinus HOM05D004805 ORTHO05D005756 2.3e-86 322.8 218 71.6
FAN16G0962 Fragaria x ananassa HOM05D004805 ORTHO05D005756 2.3e-86 322.8 223 69.1
FAN25G0449 Fragaria x ananassa HOM05D004805 ORTHO05D005756 2.3e-86 322.8 223 69.1
Psat2g007280 Pisum sativum HOM05D004805 ORTHO05D005756 3.0e-86 322.4 221 70.1
TPR.G8592 Trifolium pratense HOM05D004805 ORTHO05D005756 5.2e-86 321.6 221 70.6
Ciclev10009329m.g Citrus clementina HOM05D004805 ORTHO05D005756 8.8e-86 320.9 230 69.1
RcHm_v2.0_Chr5g0018651 Rosa chinensis HOM05D004805 ORTHO05D005756 8.8e-86 320.9 223 69.1
Medtr5g095960 Medicago truncatula HOM05D004805 ORTHO05D005756 1.2e-85 320.5 221 69.7
Haze_09828 Corylus avellana HOM05D004805 ORTHO05D005756 1.5e-85 320.1 220 70.5
RcHm_v2.0_Chr7g0241681 Rosa chinensis HOM05D004805 ORTHO05D005756 1.5e-85 320.1 223 69.1
CSS0002120 Camellia sinensis var. sinensis HOM05D004805 ORTHO05D005756 5.7e-85 318.2 226 69.5
CiPaw.12G138400 Carya illinoinensis HOM05D004805 ORTHO05D005756 5.7e-85 318.2 218 71.1
Gorai.004G033700 Gossypium raimondii HOM05D004805 ORTHO05D005756 5.7e-85 318.2 221 69.2
Phvul.008G279200 Phaseolus vulgaris HOM05D004805 ORTHO05D005756 7.5e-85 317.8 218 70.2
Lj1g0004670 Lotus japonicus HOM05D004805 ORTHO05D005756 9.8e-85 317.4 231 66.7
PSO063G7513 Papaver somniferum HOM05D004805 ORTHO05D005756 1.3e-84 317.0 217 70.5
Aqoxy4G03118 Aquilegia oxysepala HOM05D004805 ORTHO05D005756 1.7e-84 316.6 213 71.4
Rhsim06G0229900 Rhododendron simsii HOM05D004805 ORTHO05D005756 2.8e-84 315.8 228 68.0
Peaxi162Scf00139g01316 Petunia axillaris HOM05D004805 ORTHO05D005756 3.7e-84 315.5 229 68.1
Lj1C890G11 Lonicera japonica HOM05D004805 ORTHO05D005756 6.3e-84 314.7 216 72.2
ClCG10G004450 Citrullus lanatus HOM05D004805 ORTHO05D005756 8.3e-84 314.3 220 69.1
Sopen07g033800 Solanum pennellii HOM05D004805 ORTHO05D005756 1.1e-83 313.9 226 66.4
Aa31LG3G11710 Aethionema arabicum HOM05D004805 ORTHO05D005756 1.8e-83 313.2 216 68.1
arahy.Tifrunner.gnm1.ann1.KL44N8 Arachis hypogaea HOM05D004805 ORTHO05D005756 1.8e-83 313.2 221 69.2
Cc00_g18290 Coffea canephora HOM05D004805 ORTHO05D005756 1.8e-83 313.2 217 70.0
Eucgr.F03688 Eucalyptus grandis HOM05D004805 ORTHO05D005756 1.8e-83 313.2 219 69.9
Actinidia05003 Actinidia chinensis HOM05D004805 ORTHO05D005756 2.4e-83 312.8 216 71.3
CAN.G623.13 Capsicum annuum HOM05D004805 ORTHO05D005756 2.4e-83 312.8 232 65.1
Potri.005G032300 Populus trichocarpa HOM05D004805 ORTHO05D005756 3.1e-83 312.4 233 65.7
arahy.Tifrunner.gnm1.ann1.1A96RS Arachis hypogaea HOM05D004805 ORTHO05D005756 4.1e-83 312.0 221 69.2
CANSAT11G2385 Cannabis sativa HOM05D004805 ORTHO05D005756 4.1e-83 312.0 218 68.8
Manes.03G141600 Manihot esculenta HOM05D004805 ORTHO05D005756 4.1e-83 312.0 218 68.3
Carub.0008s1616 Capsella rubella HOM05D004805 ORTHO05D005756 5.4e-83 311.6 217 68.2
Lsat_1_v5_gn_9_89740 Lactuca sativa HOM05D004805 ORTHO05D005756 5.4e-83 311.6 221 68.3
PGSC0003DMG400022170 Solanum tuberosum HOM05D004805 ORTHO05D005756 9.1e-83 310.8 222 67.6
AL8G31370 Arabidopsis lyrata HOM05D004805 ORTHO05D005756 1.2e-82 310.5 216 68.5
AT5G55810 Arabidopsis thaliana HOM05D004805 ORTHO05D005756 1.2e-82 310.5 216 68.5
CsaV3_3G004240 Cucumis sativus L. HOM05D004805 ORTHO05D005756 1.2e-82 310.5 230 64.8
ECA234G3028 Erigeron canadensis HOM05D004805 ORTHO05D005756 1.2e-82 310.5 228 66.7
BcaC01g06393 Brassica carinata HOM05D004805 ORTHO05D005756 1.6e-82 310.1 218 66.5
Solyc07g065590.4 Solanum lycopersicum HOM05D004805 ORTHO05D005756 1.6e-82 310.1 232 65.1
CARHR269130 Cardamine hirsuta HOM05D004805 ORTHO05D005756 2.0e-82 309.7 216 67.6
Sabra05G0034900 Salix brachista HOM05D004805 ORTHO05D005756 2.0e-82 309.7 233 64.8
BcaC04g20199 Brassica carinata HOM05D004805 ORTHO05D005756 3.5e-82 308.9 225 65.3
BcaB01g04372 Brassica carinata HOM05D004805 ORTHO05D005756 4.5e-82 308.5 216 67.1
EL10Ac1g00341 Beta vulgaris HOM05D004805 ORTHO05D005756 1.0e-81 307.4 251 61.4
DCAR_013232 Daucus carota HOM05D004805 ORTHO05D005756 1.0e-81 307.4 219 68.5
Potri.013G021900 Populus trichocarpa HOM05D004805 ORTHO05D005756 1.3e-81 307.0 230 66.1
Sp6g17690 Schrenkiella parvula HOM05D004805 ORTHO05D005756 1.3e-81 307.0 217 65.9
SGA_v2.0_scaffold44G16806 Striga asiatica HOM05D001081 ORTHO05D003320 2.3e-81 306.2 236 63.6
PGR142G3095 Punica granatum HOM05D004805 ORTHO05D005756 2.9e-81 305.8 222 66.7
Carub.0005s0950 Capsella rubella HOM05D004805 ORTHO05D005756 5.0e-81 305.1 225 65.8
HanXRQChr03g0074031 Helianthus annuus HOM05D004805 ORTHO05D005756 6.6e-81 304.7 218 67.9
Sed0016007 Sechium edule HOM05D004805 ORTHO05D005756 6.6e-81 304.7 218 66.1
Carub.0005s0937 Capsella rubella HOM05D004805 ORTHO05D005756 1.1e-80 303.9 225 65.3
HPP92_025829 Vanilla planifolia HOM05D004805 ORTHO05D005756 2.5e-80 302.8 225 63.6
BcaB08g35939 Brassica carinata HOM05D004805 ORTHO05D005756 3.0e-78 295.8 216 64.8
MD10G1240100 Malus domestica HOM05D004805 ORTHO05D005756 4.0e-78 295.4 204 71.1
MSTRG.27026 Avicennia marina HOM05D004805 ORTHO05D005756 6.8e-78 294.7 228 64.0
MELO3C014119.2 Cucumis melo HOM05D004805 ORTHO05D005756 6.8e-78 294.7 258 58.5
Zm00001eb191530 Zea mays HOM05D004805 ORTHO05D005756 2.0e-77 293.1 213 66.2
SalBow4G0417 Salvia bowleyana HOM05D004805 ORTHO05D005756 9.8e-77 290.8 253 58.5
Gohir.D08G035700 Gossypium hirsutum HOM05D004805 ORTHO05D005756 8.3e-76 287.7 221 64.3
TWI38G2348 Tripterygium wilfordii HOM05D004805 ORTHO05D005756 1.1e-75 287.3 207 67.1
Gohir.A08G025200 Gossypium hirsutum HOM05D004805 ORTHO05D005756 1.2e-74 283.9 221 63.3
Duzib213G0036 Durio zibethinus HOM05D004805 ORTHO05D005756 3.5e-74 282.3 221 63.3
QL08p004083 Quercus lobata HOM05D004805 ORTHO05D005756 3.5e-74 282.3 204 69.1
Hma1.2p1_1402F.1_g281100 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 2.3e-73 279.6 201 68.7
vmacro11591 Vaccinium macrocarpon HOM05D004805 ORTHO05D005756 1.5e-72 276.9 239 59.8
A03p13810 Brassica napus HOM05D004805 ORTHO05D005756 2.1e-71 273.1 191 64.9
C03p16250 Brassica napus HOM05D004805 ORTHO05D005756 2.8e-71 272.7 191 66.0
VMungo0647G2576 Vigna mungo HOM05D004805 ORTHO05D005756 4.7e-71 271.9 198 68.2
Sc16g0008090 Simmondsia chinensis HOM05D004805 ORTHO05D005756 4.0e-70 268.9 225 61.8
Nitab4.5_0002736g0040 Nicotiana tabacum HOM05D004805 ORTHO05D005756 5.2e-70 268.5 195 66.2
Hund27237 Selenicereus undatus HOM05D004805 ORTHO05D005756 8.9e-70 267.7 223 61.4
C09p46750 Brassica napus HOM05D004805 ORTHO05D005756 2.0e-69 266.5 199 64.3
BolC9t57526H Brassica oleracea HOM05D004805 ORTHO05D005756 2.0e-69 266.5 199 64.3
A10p13030 Brassica napus HOM05D004805 ORTHO05D005756 2.6e-69 266.2 199 65.3
Mapoly0011s0011 Marchantia polymorpha HOM05D004805 ORTHO05D005756 9.8e-69 264.2 218 60.1
BraA10t43397Z Brassica rapa HOM05D004805 ORTHO05D005756 1.3e-68 263.8 199 64.3
AagrBONN_evm.TU.Sc2ySwM_362.484 Anthoceros agrestis HOM05D004805 ORTHO05D005756 6.4e-68 261.5 220 56.4
Pp3c10_25720 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.4e-67 260.4 219 57.1
Pp3c20_23380 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.9e-67 260.0 223 56.5
Medtr3g007850 Medicago truncatula HOM05D004805 ORTHO05D005756 9.2e-67 257.7 169 72.8
Nitab4.5_0007415g0050 Nicotiana tabacum HOM05D004805 ORTHO05D005756 3.5e-66 255.8 196 63.8
AUR62022629 Chenopodium quinoa HOM05D004805 ORTHO05D005756 4.6e-66 255.4 227 57.7
Pp3c3_17230 Physcomitrium patens HOM05D004805 ORTHO05D005756 4.6e-66 255.4 222 55.4
Thecc.07G013300 Theobroma cacao HOM05D004805 ORTHO05D005756 4.6e-66 255.4 180 68.9
Lsat_1_v5_gn_4_137701 Lactuca sativa HOM05D004805 ORTHO05D005756 5.0e-65 251.9 167 73.1
Pp3c13_13680 Physcomitrium patens HOM05D004805 ORTHO05D005756 2.1e-63 246.5 233 51.9
CAN.G849.12 Capsicum annuum HOM05D004805 ORTHO05D005756 5.2e-62 241.9 169 67.5
SGA_v2.0_scaffold192G40544 Striga asiatica HOM05D001081 ORTHO05D003320 7.5e-61 238.0 204 60.3
AagrBONN_evm.TU.Sc2ySwM_228.3487 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.3e-60 237.3 206 55.8
Prupe.4G103800 Prunus persica HOM05D004805 ORTHO05D005756 1.4e-59 233.8 224 55.4
AUR62004423 Chenopodium quinoa HOM05D004805 ORTHO05D005756 1.9e-56 223.4 164 65.9
CBR_g34363 Chara braunii HOM05D000019 ORTHO05D000002 3.3e-56 222.6 219 51.6
AagrBONN_evm.TU.Sc2ySwM_344.1047 Anthoceros agrestis HOM05D004805 ORTHO05D005756 5.6e-56 221.9 191 56.5
Migut.F01027 Erythranthe guttata HOM05D004805 ORTHO05D005756 1.2e-55 220.7 230 52.2
CARHR269180 Cardamine hirsuta HOM05D004805 ORTHO05D005756 6.2e-55 218.4 164 62.2
FAN21G3052 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.1e-54 217.6 176 62.5
Ah.05g180060 Amaranthus hybridus HOM05D004805 ORTHO05D005756 8.9e-54 214.5 163 61.3
Lj3g0007860 Lotus japonicus HOM05D004805 ORTHO05D005756 2.6e-53 213.0 243 54.3
Hma1.2p1_1516F.1_g288260 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 2.2e-52 209.9 196 58.7
TAR624G1110 Trochodendron aralioides HOM05D004805 ORTHO05D005756 6.4e-52 208.4 171 64.9
SMO364G0361 Selaginella moellendorffii HOM05D004805 ORTHO05D005756 3.5e-50 202.6 214 48.6
Rhsim04G0012600 Rhododendron simsii HOM05D004805 ORTHO05D005756 4.3e-48 195.7 168 61.3
Glyma.19G097900 Glycine max HOM05D004805 ORTHO05D005756 2.1e-47 193.4 144 67.4
BraA03t10684Z Brassica rapa HOM05D004805 ORTHO05D005756 6.2e-47 191.8 207 49.3
AagrBONN_evm.TU.Sc2ySwM_344.1045 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.2e-45 187.6 193 48.7
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 4.4e-45 185.7 172 58.1
COL.COLO4_09836 Corchorus olitorius HOM05D004805 ORTHO05D005756 2.7e-42 176.4 103 79.6
BolC3t14047H Brassica oleracea HOM05D004805 ORTHO05D005756 3.0e-41 172.9 217 44.7
Os02g0814900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 3.9e-41 172.6 168 54.2
Thhalv10015421m.g Eutrema salsugineum HOM05D004805 ORTHO05D005756 6.6e-41 171.8 192 47.9
Cpa.g.sc26.30 Carica papaya HOM05D004805 ORTHO05D005756 3.6e-39 166.0 117 69.2
ECA240G4670 Erigeron canadensis HOM05D004805 ORTHO05D005756 4.9e-36 155.6 105 73.3
PRCOL_00003123 Prasinoderma coloniale HOM05D004805 ORTHO05D005756 4.9e-36 155.6 230 38.7
Os09g0347900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 2.1e-34 150.2 106 66.0
unitig_0.g252 Utricularia gibba HOM05D004805 ORTHO05D005756 2.5e-32 143.3 108 62.0
Glyma.02G300600 Glycine max HOM05D004805 ORTHO05D005756 9.6e-32 141.4 105 67.6
PSO170G0902 Papaver somniferum HOM05D004805 ORTHO05D005756 1.3e-28 131.0 76 76.3
QL08p004070 Quercus lobata HOM05D000031 ORTHO05D005756 1.9e-24 117.1 215 39.1
Cfa025186 Carpinus fangiana HOM05D004805 ORTHO05D005756 2.1e-23 113.6 161 37.9
SEGI_22417 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 9.0e-22 108.2 99 52.5
Hma1.2p1_0226F.1_g095340 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 2.9e-20 103.2 161 41.0
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 4.8e-15 85.9 67 64.2
FAN24G2452 Fragaria x ananassa HOM05D004805 ORTHO05D005756 4.1e-14 82.8 57 63.2
SEGI_01519 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 3.8e-12 76.3 69 56.5
Oeu037059.1 Olea europaea HOM05D004805 ORTHO05D005756 1.6e-10 70.9 50 70.0
CBR_g34381 Chara braunii HOM05D000019 ORTHO05D000048 7.9e-10 68.6 81 44.4
FAN16G1285 Fragaria x ananassa HOM05D004805 ORTHO05D005756 8.7e-09 65.1 46 60.9
Cre14.g626950 Chlamydomonas reinhardtii HOM05D004805 ORTHO05D005756 1.5e-08 64.3 107 34.6
SEGI_37983 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 7.4e-08 62.0 76 42.1


User provided reference genes

Program Settings