Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0088G060 Amborella trichopoda HOM05D007485 ORTHO05D009437 2.6e-33 144.8 74 100.0
Nn1g03123 Nelumbo nucifera HOM05D007485 ORTHO05D009437 6.9e-18 93.6 58 79.3
MBI10_g09190_MAGBIO Magnolia biondii HOM05D007485 ORTHO05D009437 2.6e-17 91.7 56 83.9
Rhsim13G0042600 Rhododendron simsii HOM05D007485 ORTHO05D009437 2.6e-17 91.7 56 78.6
Atru.chr5.1880 Acer truncatum HOM05D007485 ORTHO05D009437 4.5e-17 90.9 58 77.6
QL09p045086 Quercus lobata HOM05D007485 ORTHO05D009437 5.8e-17 90.5 58 77.6
TWI59G0176 Tripterygium wilfordii HOM05D007485 ORTHO05D009437 5.8e-17 90.5 58 77.6
vmacro02738 Vaccinium macrocarpon HOM05D007485 ORTHO05D009437 5.8e-17 90.5 56 78.6
QL09p044412 Quercus lobata HOM05D007485 ORTHO05D009437 7.6e-17 90.1 56 80.4
PGR083G2217 Punica granatum HOM05D007485 ORTHO05D009437 1.3e-16 89.4 58 75.9
Thecc.01G230100 Theobroma cacao HOM05D007485 ORTHO05D009437 1.7e-16 89.0 58 72.4
MD05G1180900 Malus domestica HOM05D007485 ORTHO05D009437 2.2e-16 88.6 57 73.7
MD10G1169600 Malus domestica HOM05D007485 ORTHO05D009437 2.2e-16 88.6 58 72.4
Peaxi162Scf00499g00019 Petunia axillaris HOM05D007485 ORTHO05D009437 3.8e-16 87.8 56 73.2
Actinidia37576 Actinidia chinensis HOM05D007485 ORTHO05D009437 4.9e-16 87.4 56 75.0
Gohir.A07G201700 Gossypium hirsutum HOM05D007485 ORTHO05D009437 4.9e-16 87.4 58 75.9
Gohir.D07G208000 Gossypium hirsutum HOM05D007485 ORTHO05D009437 4.9e-16 87.4 58 75.9
GSVIVG01028546001 Vitis vinifera HOM05D007485 ORTHO05D009437 4.9e-16 87.4 56 75.0
Aqoxy2G03844 Aquilegia oxysepala HOM05D007485 ORTHO05D009437 6.4e-16 87.0 56 76.8
Prupe.8G207500 Prunus persica HOM05D007485 ORTHO05D009437 6.4e-16 87.0 58 74.1
Gorai.001G234600 Gossypium raimondii HOM05D007485 ORTHO05D009437 1.4e-15 85.9 57 75.4
Manes.12G043200 Manihot esculenta HOM05D007485 ORTHO05D009437 1.4e-15 85.9 58 72.4
Phvul.008G122300 Phaseolus vulgaris HOM05D007485 ORTHO05D009437 2.4e-15 85.1 58 69.0
TPR.G9157 Trifolium pratense HOM05D007485 ORTHO05D009437 3.2e-15 84.7 60 70.0
arahy.Tifrunner.gnm1.ann1.W4TMFE Arachis hypogaea HOM05D007485 ORTHO05D009437 4.2e-15 84.3 60 68.3
CiPaw.03G152400 Carya illinoinensis HOM05D007485 ORTHO05D009437 5.4e-15 84.0 57 73.7
COL.COLO4_36853 Corchorus olitorius HOM05D007485 ORTHO05D009437 5.4e-15 84.0 57 71.9
Duzib133G1001 Durio zibethinus HOM05D007485 ORTHO05D009437 5.4e-15 84.0 53 75.5
Glyma.18G175800 Glycine max HOM05D007485 ORTHO05D009437 5.4e-15 84.0 58 67.2
CANSAT01G1289 Cannabis sativa HOM05D007485 ORTHO05D009437 7.1e-15 83.6 58 69.0
Cfa002536 Carpinus fangiana HOM05D001836 ORTHO05D001519 7.1e-15 83.6 57 70.2
Haze_24766 Corylus avellana HOM05D007485 ORTHO05D009437 7.1e-15 83.6 57 70.2
ECA247G1773 Erigeron canadensis HOM05D007485 ORTHO05D009437 7.1e-15 83.6 58 72.4
Lj1g0002217 Lotus japonicus HOM05D007485 ORTHO05D009437 7.1e-15 83.6 56 71.4
BcaB03g13243 Brassica carinata HOM05D007485 ORTHO05D009437 1.2e-14 82.8 58 70.7
BcaC07g38678 Brassica carinata HOM05D007485 ORTHO05D009437 1.2e-14 82.8 58 70.7
A08p33350 Brassica napus HOM05D007485 ORTHO05D009437 1.2e-14 82.8 58 70.7
C08p14780 Brassica napus HOM05D007485 ORTHO05D009437 1.2e-14 82.8 58 70.7
BolC8t49113H Brassica oleracea HOM05D007485 ORTHO05D009437 1.2e-14 82.8 58 70.7
BraA08t35252Z Brassica rapa HOM05D007485 ORTHO05D009437 1.2e-14 82.8 58 70.7
CSS0034782 Camellia sinensis var. sinensis HOM05D007485 ORTHO05D009437 1.2e-14 82.8 56 69.6
Medtr7g059255 Medicago truncatula HOM05D007485 ORTHO05D009437 1.2e-14 82.8 58 70.7
VMungo1383G3371 Vigna mungo HOM05D007485 ORTHO05D009437 1.2e-14 82.8 58 67.2
arahy.Tifrunner.gnm1.ann1.9XF3L6 Arachis hypogaea HOM05D007485 ORTHO05D009437 1.6e-14 82.4 58 70.7
Glyma.08G357300 Glycine max HOM05D007485 ORTHO05D009437 1.6e-14 82.4 58 65.5
CsaV3_3G028690 Cucumis sativus L. HOM05D007485 ORTHO05D009437 2.1e-14 82.0 56 67.9
AL9U10750 Arabidopsis lyrata HOM05D007485 ORTHO05D009437 2.7e-14 81.6 58 69.0
AT4G13220 Arabidopsis thaliana HOM05D007485 ORTHO05D009437 2.7e-14 81.6 58 69.0
Ciclev10022604m.g Citrus clementina HOM05D007485 ORTHO05D009437 2.7e-14 81.6 57 64.9
FAN15G2643 Fragaria x ananassa HOM05D007485 ORTHO05D009437 2.7e-14 81.6 57 70.2
FAN24G1628 Fragaria x ananassa HOM05D007485 ORTHO05D009437 2.7e-14 81.6 57 70.2
FAN27G2610 Fragaria x ananassa HOM05D007485 ORTHO05D009437 2.7e-14 81.6 57 70.2
Nitab4.5_0001740g0030 Nicotiana tabacum HOM05D007485 ORTHO05D009437 2.7e-14 81.6 56 69.6
RcHm_v2.0_Chr6g0285341 Rosa chinensis HOM05D007485 ORTHO05D009437 2.7e-14 81.6 57 70.2
HPP92_025808 Vanilla planifolia HOM05D007485 ORTHO05D009437 2.7e-14 81.6 56 71.4
Carub.0007s2945 Capsella rubella HOM05D007485 ORTHO05D009437 3.5e-14 81.3 58 69.0
FvH4_2g19580 Fragaria vesca HOM05D007485 ORTHO05D009437 3.5e-14 81.3 57 68.4
Aa31LG9G4570 Aethionema arabicum HOM05D007485 ORTHO05D009437 6.0e-14 80.5 58 69.0
Thhalv10026377m.g Eutrema salsugineum HOM05D007485 ORTHO05D009437 6.0e-14 80.5 58 69.0
Potri.002G251800 Populus trichocarpa HOM05D007485 ORTHO05D009437 6.0e-14 80.5 58 65.5
Sp7g10710 Schrenkiella parvula HOM05D007485 ORTHO05D009437 6.0e-14 80.5 58 69.0
CDE12G0678 Ceratophyllum demersum HOM05D007485 ORTHO05D009437 7.9e-14 80.1 55 65.5
Os12g0276100 Oryza sativa ssp. japonica HOM05D007485 ORTHO05D009437 7.9e-14 80.1 56 66.1
THA.LOC104808772 Tarenaya hassleriana HOM05D007485 ORTHO05D009437 7.9e-14 80.1 58 63.8
Eucgr.C02436 Eucalyptus grandis HOM05D007485 ORTHO05D009437 1.3e-13 79.3 56 67.9
Solyc06g007990.4 Solanum lycopersicum HOM05D007485 ORTHO05D009437 1.3e-13 79.3 56 67.9
Sopen06g002830 Solanum pennellii HOM05D007485 ORTHO05D009437 1.3e-13 79.3 56 67.9
PGSC0003DMG400014703 Solanum tuberosum HOM05D007485 ORTHO05D009437 1.3e-13 79.3 56 67.9
Sed0027911 Sechium edule HOM05D007485 ORTHO05D009437 1.8e-13 79.0 51 70.6
MSTRG.18375 Avicennia marina HOM05D007485 ORTHO05D009437 2.3e-13 78.6 56 64.3
EL10Ac7g17803 Beta vulgaris HOM05D007485 ORTHO05D009437 3.0e-13 78.2 56 67.9
CARHR126310 Cardamine hirsuta HOM05D007485 ORTHO05D009437 3.9e-13 77.8 58 65.5
MELO3C012792.2 Cucumis melo HOM05D007485 ORTHO05D009437 3.9e-13 77.8 56 64.3
Migut.D00513 Erythranthe guttata HOM05D007485 ORTHO05D009437 3.9e-13 77.8 56 62.5
Lsat_1_v5_gn_9_12821 Lactuca sativa HOM05D007485 ORTHO05D009437 3.9e-13 77.8 58 67.2
PSO017G5507 Papaver somniferum HOM05D007485 ORTHO05D009437 3.9e-13 77.8 56 69.6
Zm00001eb102490 Zea mays HOM05D007485 ORTHO05D009437 3.9e-13 77.8 55 67.3
CARHR218700 Cardamine hirsuta HOM05D007485 ORTHO05D009437 5.1e-13 77.4 58 65.5
Lalb_Chr19g0125461 Lupinus albus HOM05D007485 ORTHO05D009437 1.1e-12 76.3 58 62.1
AUR62008887 Chenopodium quinoa HOM05D007485 ORTHO05D009437 1.9e-12 75.5 58 60.3
HanXRQChr15g0468381 Helianthus annuus HOM05D007485 ORTHO05D009437 1.9e-12 75.5 58 67.2
CAN.G322.118 Capsicum annuum HOM05D007485 ORTHO05D009437 2.5e-12 75.1 56 66.1
AUR62031821 Chenopodium quinoa HOM05D007485 ORTHO05D009437 2.5e-12 75.1 56 62.5
Cc01_g17350 Coffea canephora HOM05D007485 ORTHO05D009437 3.3e-12 74.7 56 64.3
Zm00001eb317800 Zea mays HOM05D007485 ORTHO05D009437 3.3e-12 74.7 55 63.6
SGA_v2.0_scaffold1G00709 Striga asiatica HOM05D007485 ORTHO05D009437 4.3e-12 74.3 56 64.3
Sc05g0002340 Simmondsia chinensis HOM05D007485 ORTHO05D009437 5.6e-12 73.9 56 64.3
PSO063G7151 Papaver somniferum HOM05D007485 ORTHO05D009437 2.1e-11 72.0 51 72.5
Hund18369 Selenicereus undatus HOM05D007485 ORTHO05D009437 2.8e-11 71.6 62 58.1
HanXRQChr12g0377041 Helianthus annuus HOM05D007485 ORTHO05D009437 1.1e-10 69.7 60 55.0
Psat0s3317g0040 Pisum sativum HOM05D007485 ORTHO05D009437 1.1e-10 69.7 55 61.8
SalBow6G3754 Salvia bowleyana HOM05D007485 ORTHO05D009437 1.8e-10 68.9 55 60.0
Mapoly0101s0026 Marchantia polymorpha HOM05D007485 ORTHO05D009437 7.6e-09 63.5 57 54.4
unitig_0.g180 Utricularia gibba HOM05D007485 ORTHO05D009437 1.0e-08 63.2 60 55.0


User provided reference genes

Program Settings