Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0088G017 Amborella trichopoda HOM05D006101 ORTHO05D007422 1.5e-261 905.6 447 100.0
TAR636G3121 Trochodendron aralioides HOM05D006101 ORTHO05D007422 1.1e-142 510.8 437 57.7
GSVIVG01031479001 Vitis vinifera HOM05D006101 ORTHO05D007422 8.1e-130 468.0 436 54.4
Atru.chr3.3528 Acer truncatum HOM05D006101 ORTHO05D007422 3.0e-124 449.5 434 50.9
CSS0020443 Camellia sinensis var. sinensis HOM05D006101 ORTHO05D007422 2.1e-122 443.4 444 50.0
TWI75G1238 Tripterygium wilfordii HOM05D006101 ORTHO05D007422 1.1e-121 441.0 439 50.6
Hma1.2p1_0051F.1_g029390 Hydrangea macrophylla HOM05D006101 ORTHO05D007422 6.9e-121 438.3 441 51.2
Dinv16214 Davidia involucrata HOM05D006101 ORTHO05D007422 2.0e-120 436.8 441 50.3
Aqoxy1G01111 Aquilegia oxysepala HOM05D006101 ORTHO05D007422 3.4e-120 436.0 441 50.6
MD11G1147300 Malus domestica HOM05D006101 ORTHO05D007422 1.9e-118 430.3 436 50.0
Potri.009G006200 Populus trichocarpa HOM05D006101 ORTHO05D007422 3.2e-118 429.5 438 48.9
CSS0026133 Camellia sinensis var. sinensis HOM05D006101 ORTHO05D007422 5.4e-118 428.7 413 51.1
CiPaw.13G123600 Carya illinoinensis HOM05D006101 ORTHO05D007422 5.4e-118 428.7 436 50.2
QL01p015279 Quercus lobata HOM05D006101 ORTHO05D007422 1.5e-115 420.6 439 49.7
Cfa010291 Carpinus fangiana HOM05D006101 ORTHO05D007422 3.3e-115 419.5 435 49.2
Manes.04G013700 Manihot esculenta HOM05D006101 ORTHO05D007422 4.3e-115 419.1 433 49.0
MBI13_g39328_MAGBIO Magnolia biondii HOM05D006101 ORTHO05D007422 9.6e-115 417.9 520 44.0
CsaV3_1G013150 Cucumis sativus L. HOM05D006101 ORTHO05D007422 1.1e-113 414.5 437 47.4
CAN.G546.34 Capsicum annuum HOM05D006101 ORTHO05D007422 3.1e-113 412.9 439 46.5
Duzib150G0708 Durio zibethinus HOM05D006101 ORTHO05D007422 4.0e-113 412.5 442 46.6
Sed0008610 Sechium edule HOM05D006101 ORTHO05D007422 4.0e-113 412.5 434 47.0
PGSC0003DMG400000413 Solanum tuberosum HOM05D006101 ORTHO05D007422 4.0e-113 412.5 439 46.5
FvH4_3g30770 Fragaria vesca HOM05D006101 ORTHO05D007422 1.5e-112 410.6 437 48.3
ClCG03G002470 Citrullus lanatus HOM05D006101 ORTHO05D007422 4.5e-112 409.1 437 46.5
Haze_23705 Corylus avellana HOM05D006101 ORTHO05D007422 4.5e-112 409.1 436 49.1
Solyc11g066340.2 Solanum lycopersicum HOM05D006101 ORTHO05D007422 9.9e-112 407.9 438 45.7
Prupe.6G111800 Prunus persica HOM05D006101 ORTHO05D007422 1.7e-111 407.1 435 48.0
Lsat_1_v5_gn_6_44300 Lactuca sativa HOM05D006101 ORTHO05D007422 2.2e-111 406.8 445 46.5
RcHm_v2.0_Chr5g0056961 Rosa chinensis HOM05D006101 ORTHO05D007422 2.2e-111 406.8 436 47.9
Sopen11g026080 Solanum pennellii HOM05D006101 ORTHO05D007422 2.5e-110 403.3 438 45.2
PGR102G2892 Punica granatum HOM05D006101 ORTHO05D007422 3.2e-110 402.9 433 46.0
Cc01_g10370 Coffea canephora HOM05D006101 ORTHO05D007422 5.5e-110 402.1 441 46.9
Thecc.09G350300 Theobroma cacao HOM05D006101 ORTHO05D007422 2.7e-109 399.8 434 45.2
Nitab4.5_0000329g0130 Nicotiana tabacum HOM05D006101 ORTHO05D007422 3.5e-109 399.4 432 45.8
CANSAT56G2622 Cannabis sativa HOM05D006101 ORTHO05D007422 6.0e-109 398.7 445 47.6
PSO063G0796 Papaver somniferum HOM05D006101 ORTHO05D007422 6.0e-109 398.7 443 47.4
Actinidia03696 Actinidia chinensis HOM05D006101 ORTHO05D007422 1.3e-108 397.5 443 47.4
Carub.0004s0893 Capsella rubella HOM05D006101 ORTHO05D007422 8.7e-108 394.8 441 46.3
Lalb_Chr19g0136961 Lupinus albus HOM05D006101 ORTHO05D007422 8.7e-108 394.8 434 44.9
THA.LOC104800579 Tarenaya hassleriana HOM05D006101 ORTHO05D007422 1.1e-107 394.4 438 46.3
PSO339G3309 Papaver somniferum HOM05D006101 ORTHO05D007422 2.5e-107 393.3 443 47.4
FAN21G1086 Fragaria x ananassa HOM05D006101 ORTHO05D007422 3.3e-107 392.9 434 47.5
HanXRQChr13g0396251 Helianthus annuus HOM05D006101 ORTHO05D007422 3.3e-107 392.9 439 46.0
Gohir.A03G029500 Gossypium hirsutum HOM05D006101 ORTHO05D007422 1.6e-106 390.6 444 44.4
Eucgr.B03934 Eucalyptus grandis HOM05D006101 ORTHO05D007422 3.7e-106 389.4 434 46.5
Lj2C1009G5 Lonicera japonica HOM05D006101 ORTHO05D007422 4.8e-106 389.0 472 43.2
FAN16G0923 Fragaria x ananassa HOM05D006101 ORTHO05D007422 8.2e-106 388.3 435 46.4
Gohir.D03G139000 Gossypium hirsutum HOM05D006101 ORTHO05D007422 1.1e-105 387.9 444 44.4
FAN11G1700 Fragaria x ananassa HOM05D002446 ORTHO05D007422 1.8e-105 387.1 441 46.3
COL.COLO4_11107 Corchorus olitorius HOM05D006101 ORTHO05D007422 4.0e-105 386.0 434 45.6
Ciclev10028403m.g Citrus clementina HOM05D006101 ORTHO05D007422 9.0e-105 384.8 438 45.7
Gorai.003G145800 Gossypium raimondii HOM05D006101 ORTHO05D007422 2.0e-104 383.6 444 44.1
AT2G28130 Arabidopsis thaliana HOM05D006101 ORTHO05D007422 3.4e-104 382.9 444 43.9
Sp4g10940 Schrenkiella parvula HOM05D006101 ORTHO05D007422 1.0e-103 381.3 439 44.2
MSTRG.21091 Avicennia marina HOM05D006101 ORTHO05D007422 2.2e-103 380.2 435 45.7
Migut.D02287 Erythranthe guttata HOM05D006101 ORTHO05D007422 2.2e-103 380.2 440 46.4
Oeu007313.2 Olea europaea HOM05D006101 ORTHO05D007422 2.2e-103 380.2 472 43.4
FAN25G1259 Fragaria x ananassa HOM05D006101 ORTHO05D007422 2.9e-103 379.8 438 45.4
Phvul.011G085500 Phaseolus vulgaris HOM05D006101 ORTHO05D007422 8.4e-103 378.3 438 43.8
BcaC02g10947 Brassica carinata HOM05D006101 ORTHO05D007422 7.1e-102 375.2 438 44.5
CDE09G0605 Ceratophyllum demersum HOM05D006101 ORTHO05D007422 1.2e-101 374.4 439 45.8
BcaB02g10150 Brassica carinata HOM05D006101 ORTHO05D007422 2.7e-101 373.2 442 44.3
Rhsim01G0211100 Rhododendron simsii HOM05D006101 ORTHO05D007422 1.0e-100 371.3 444 45.9
Sabra09G0003500 Salix brachista HOM05D006101 ORTHO05D007422 1.3e-100 370.9 400 44.8
Glyma.11G193400 Glycine max HOM05D006101 ORTHO05D007422 1.1e-99 367.9 434 43.8
MELO3C004994.2 Cucumis melo HOM05D006101 ORTHO05D007422 1.5e-99 367.5 482 41.7
Aa31LG5G8010 Aethionema arabicum HOM05D006101 ORTHO05D007422 2.5e-99 366.7 441 44.2
Psat0s1387g0080 Pisum sativum HOM05D006101 ORTHO05D007422 2.5e-99 366.7 441 42.2
Ca_30122_v3 Cicer arietinum L. HOM05D006101 ORTHO05D007422 9.7e-99 364.8 433 41.8
CARHR120970 Cardamine hirsuta HOM05D006101 ORTHO05D007422 6.3e-98 362.1 443 44.0
VMungo1127G1509 Vigna mungo HOM05D006101 ORTHO05D007422 1.4e-97 360.9 438 41.8
C04p23380 Brassica napus HOM05D006101 ORTHO05D007422 6.9e-97 358.6 438 43.6
Lj3g0002990 Lotus japonicus HOM05D006101 ORTHO05D007422 3.4e-96 356.3 435 40.7
BolC4t23840H Brassica oleracea HOM05D006101 ORTHO05D007422 5.9e-96 355.5 442 43.2
AL4G22020 Arabidopsis lyrata HOM05D006101 ORTHO05D007422 7.7e-96 355.1 444 43.5
Peaxi162Scf00086g01114 Petunia axillaris HOM05D006101 ORTHO05D007422 7.7e-96 355.1 433 42.0
Nn2g13844 Nelumbo nucifera HOM05D006101 ORTHO05D007422 1.0e-95 354.8 380 47.4
A07p18660 Brassica napus HOM05D006101 ORTHO05D007422 2.2e-95 353.6 450 42.7
Sc06g0010850 Simmondsia chinensis HOM05D006101 ORTHO05D007422 6.5e-95 352.1 443 42.7
Ca_02469_v3 Cicer arietinum L. HOM05D006101 ORTHO05D007422 1.9e-94 350.5 433 41.1
BraA07t29579Z Brassica rapa HOM05D006101 ORTHO05D007422 2.5e-94 350.1 440 42.7
Medtr4g057493 Medicago truncatula HOM05D006101 ORTHO05D007422 3.2e-94 349.7 433 40.4
HPP92_020176 Vanilla planifolia HOM05D006101 ORTHO05D007422 3.2e-94 349.7 441 42.2
Thhalv10016576m.g Eutrema salsugineum HOM05D006101 ORTHO05D007422 6.7e-92 342.0 455 41.3
vmacro14396 Vaccinium macrocarpon HOM05D006101 ORTHO05D007422 5.7e-91 339.0 446 41.3
SalBow4G3219 Salvia bowleyana HOM05D006101 ORTHO05D007422 1.1e-89 334.7 435 42.3
ECA233G2185 Erigeron canadensis HOM05D006101 ORTHO05D007422 5.3e-89 332.4 443 40.9
SGA_v2.0_scaffold27G11561 Striga asiatica HOM05D006101 ORTHO05D007422 5.9e-88 328.9 457 40.3
EL10Ac9g22610 Beta vulgaris HOM05D006101 ORTHO05D007422 7.7e-88 328.6 450 40.9
Os01g0241100 Oryza sativa ssp. japonica HOM05D006101 ORTHO05D007422 1.7e-87 327.4 435 40.2
AUR62029180 Chenopodium quinoa HOM05D006101 ORTHO05D007422 6.3e-82 308.9 448 39.7
DCAR_018770 Daucus carota HOM05D006101 ORTHO05D007422 7.2e-78 295.4 351 43.9
Dinv29372 Davidia involucrata HOM05D006101 ORTHO05D007422 4.1e-73 279.6 314 46.8
Nitab4.5_0003880g0040 Nicotiana tabacum HOM05D006101 ORTHO05D007422 3.2e-70 270.0 447 36.7
Zm00001eb118850 Zea mays HOM05D006101 ORTHO05D007422 1.5e-67 261.2 344 40.4
unitig_747.g21973 Utricularia gibba HOM05D006101 ORTHO05D007422 7.5e-67 258.8 334 40.1
arahy.Tifrunner.gnm1.ann1.66BK9V Arachis hypogaea HOM05D006101 ORTHO05D007422 4.1e-65 253.1 448 33.5
arahy.Tifrunner.gnm1.ann1.P58SHS Arachis hypogaea HOM05D006101 ORTHO05D007422 1.0e-63 248.4 455 32.7
Ah.01g014140 Amaranthus hybridus HOM05D006101 ORTHO05D007422 1.7e-63 247.7 462 34.0
Hma1.2p1_0051F.1_g029400 Hydrangea macrophylla HOM05D006101 ORTHO05D007422 2.2e-63 247.3 232 51.7
Hund08365 Selenicereus undatus HOM05D006101 ORTHO05D007422 9.4e-62 241.9 441 32.9
arahy.Tifrunner.gnm1.ann1.V5BWPF Arachis hypogaea HOM05D006101 ORTHO05D007422 1.0e-60 238.4 445 32.8
Glyma.12G080600 Glycine max HOM05D006101 ORTHO05D007422 9.8e-59 231.9 349 36.1
AUR62014957 Chenopodium quinoa HOM05D006101 ORTHO05D007422 1.1e-57 228.4 380 35.3
HanXRQChr04g0111151 Helianthus annuus HOM05D006101 ORTHO05D007422 1.6e-45 188.0 285 38.6
Mapoly0094s0062 Marchantia polymorpha HOM05D006101 ORTHO05D007422 3.2e-41 173.7 459 26.8
Pp3c4_7040 Physcomitrium patens HOM05D006101 ORTHO05D007422 9.2e-41 172.2 444 27.5
SEGI_30921 Sequoiadendron giganteum HOM05D006101 ORTHO05D007422 2.5e-38 164.1 219 40.2
SHI06228 Sapria himalayana HOM05D006101 ORTHO05D007422 7.3e-38 162.5 197 40.1
SEGI_35146 Sequoiadendron giganteum HOM05D006101 ORTHO05D007422 1.4e-33 148.3 139 48.9
VMungo1215G2511 Vigna mungo HOM05D006101 ORTHO05D007422 7.1e-33 146.0 355 28.7
Actinidia20431 Actinidia chinensis HOM05D006101 ORTHO05D007422 4.1e-25 120.2 123 46.3
AagrBONN_evm.TU.Sc2ySwM_228.2481 Anthoceros agrestis HOM05D006101 ORTHO05D007422 6.0e-24 116.3 430 25.8
arahy.Tifrunner.gnm1.ann1.KM9ELV Arachis hypogaea HOM05D006101 ORTHO05D007422 1.1e-22 112.1 116 42.2
SMO351G0356 Selaginella moellendorffii HOM05D006101 ORTHO05D007422 2.4e-17 94.4 318 26.4
SHI06230 Sapria himalayana HOM05D006101 ORTHO05D007422 1.3e-15 88.6 122 45.9
TPR.G36765 Trifolium pratense HOM05D006101 ORTHO05D007422 3.9e-15 87.0 85 44.7
arahy.Tifrunner.gnm1.ann1.PH2QKZ Arachis hypogaea HOM05D006101 ORTHO05D007422 9.6e-14 82.4 231 28.6
arahy.Tifrunner.gnm1.ann1.88XJ4T Arachis hypogaea HOM05D006101 ORTHO05D007422 6.9e-12 76.3 122 36.1
arahy.Tifrunner.gnm1.ann1.EU9JMW Arachis hypogaea HOM05D006101 ORTHO05D007422 8.4e-10 69.3 160 31.2
SEGI_15616 Sequoiadendron giganteum HOM05D006101 ORTHO05D007422 3.3e-06 57.4 77 37.7


User provided reference genes

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