Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0083G026 Amborella trichopoda HOM05D006393 ORTHO05D008088 2.8e-152 542.0 285 100.0
Nn8g39292 Nelumbo nucifera HOM05D006393 ORTHO05D008088 4.1e-103 378.6 288 68.4
Aqoxy7G01879 Aquilegia oxysepala HOM05D006393 ORTHO05D008088 3.0e-101 372.5 282 68.8
PSO782G0281 Papaver somniferum HOM05D006393 ORTHO05D008088 1.1e-100 370.5 282 67.7
Gorai.010G068300 Gossypium raimondii HOM05D006393 ORTHO05D008088 1.8e-98 363.2 278 66.2
Gohir.A06G059900 Gossypium hirsutum HOM05D006393 ORTHO05D008088 3.1e-98 362.5 282 65.2
Gohir.D06G058100 Gossypium hirsutum HOM05D006393 ORTHO05D008088 3.1e-98 362.5 279 65.6
Actinidia09396 Actinidia chinensis HOM05D006393 ORTHO05D008088 4.0e-98 362.1 279 66.7
Duzib168G1441 Durio zibethinus HOM05D006393 ORTHO05D008088 5.2e-98 361.7 279 65.9
ClCG06G010490 Citrullus lanatus HOM05D006393 ORTHO05D008088 4.4e-97 358.6 280 67.1
GSVIVG01015453001 Vitis vinifera HOM05D006393 ORTHO05D008088 5.8e-97 358.2 283 65.7
Cfa003299 Carpinus fangiana HOM05D006393 ORTHO05D008088 7.5e-97 357.8 283 66.1
QL02p086364 Quercus lobata HOM05D006393 ORTHO05D008088 7.5e-97 357.8 287 64.5
Aa31LG9G6050 Aethionema arabicum HOM05D006393 ORTHO05D008088 1.3e-96 357.1 287 63.1
Carub.0006s1830 Capsella rubella HOM05D006393 ORTHO05D008088 1.3e-96 357.1 282 64.5
AT5G19930 Arabidopsis thaliana HOM05D006393 ORTHO05D008088 2.2e-96 356.3 282 65.2
MELO3C025307.2 Cucumis melo HOM05D006393 ORTHO05D008088 2.2e-96 356.3 279 67.0
Rhsim01G0090600 Rhododendron simsii HOM05D006393 ORTHO05D008088 2.2e-96 356.3 279 66.3
Haze_25669 Corylus avellana HOM05D006393 ORTHO05D008088 3.7e-96 355.5 283 65.4
Thecc.09G116800 Theobroma cacao HOM05D006393 ORTHO05D008088 8.3e-96 354.4 283 65.0
Hma1.2p1_0018F.1_g013070 Hydrangea macrophylla HOM05D006393 ORTHO05D008088 1.1e-95 354.0 282 66.7
Sp6g24450 Schrenkiella parvula HOM05D006393 ORTHO05D008088 1.1e-95 354.0 282 64.5
Sed0023374 Sechium edule HOM05D006393 ORTHO05D008088 1.9e-95 353.2 279 65.6
AL6G31460 Arabidopsis lyrata HOM05D006393 ORTHO05D008088 2.4e-95 352.8 282 64.5
MBI01_g13571_MAGBIO Magnolia biondii HOM05D006393 ORTHO05D008088 2.4e-95 352.8 286 67.1
TWI34G1546 Tripterygium wilfordii HOM05D006393 ORTHO05D008088 2.4e-95 352.8 283 65.4
CiPaw.03G236400 Carya illinoinensis HOM05D006393 ORTHO05D008088 3.2e-95 352.4 283 66.1
CSS0031330 Camellia sinensis var. sinensis HOM05D006393 ORTHO05D008088 4.1e-95 352.1 279 66.3
CDE06G0973 Ceratophyllum demersum HOM05D006393 ORTHO05D008088 4.1e-95 352.1 282 67.7
Potri.018G073000 Populus trichocarpa HOM05D006393 ORTHO05D008088 4.1e-95 352.1 279 65.9
Ciclev10008889m.g Citrus clementina HOM05D006393 ORTHO05D008088 7.0e-95 351.3 282 65.2
Manes.16G064200 Manihot esculenta HOM05D006393 ORTHO05D008088 1.2e-94 350.5 283 63.6
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 1.6e-94 350.1 279 65.2
CsaV3_1G030940 Cucumis sativus L. HOM05D006393 ORTHO05D008088 3.5e-94 349.0 279 65.9
Prupe.7G235100 Prunus persica HOM05D006393 ORTHO05D008088 6.0e-94 348.2 288 64.6
vmacro20677 Vaccinium macrocarpon HOM05D006393 ORTHO05D008088 6.0e-94 348.2 283 64.0
PGR102G0276 Punica granatum HOM05D006393 ORTHO05D008088 7.8e-94 347.8 283 64.0
Atru.chr7.1280 Acer truncatum HOM05D006393 ORTHO05D008088 1.3e-93 347.1 283 64.3
BcaB08g36553 Brassica carinata HOM05D006393 ORTHO05D008088 1.7e-93 346.7 278 63.7
BcaC04g19399 Brassica carinata HOM05D006393 ORTHO05D008088 2.3e-93 346.3 278 64.0
C09p56120 Brassica napus HOM05D006393 ORTHO05D008088 2.3e-93 346.3 278 64.0
BolC9t58479H Brassica oleracea HOM05D006393 ORTHO05D008088 2.3e-93 346.3 278 64.0
A10p19800 Brassica napus HOM05D006393 ORTHO05D008088 3.0e-93 345.9 278 64.7
Phvul.003G159300 Phaseolus vulgaris HOM05D006393 ORTHO05D008088 3.0e-93 345.9 282 63.1
SEGI_37175 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 3.0e-93 345.9 288 63.5
BraA10t44056Z Brassica rapa HOM05D006393 ORTHO05D008088 3.9e-93 345.5 278 64.0
Thhalv10014278m.g Eutrema salsugineum HOM05D006393 ORTHO05D008088 6.6e-93 344.7 282 62.8
CAN.G1665.6 Capsicum annuum HOM05D006393 ORTHO05D008088 1.5e-92 343.6 279 64.9
MBI04_g35350_MAGBIO Magnolia biondii HOM05D006393 ORTHO05D008088 1.5e-92 343.6 249 71.1
Cpa.g.sc23.161 Carica papaya HOM05D006393 ORTHO05D008088 2.5e-92 342.8 283 64.7
Hund09172 Selenicereus undatus HOM05D006393 ORTHO05D008088 2.5e-92 342.8 283 61.8
RcHm_v2.0_Chr2g0089771 Rosa chinensis HOM05D006393 ORTHO05D008088 9.5e-92 340.9 283 62.9
FvH4_1g04221 Fragaria vesca HOM05D006393 ORTHO05D008088 1.2e-91 340.5 283 62.9
Sopen10g030590 Solanum pennellii HOM05D006393 ORTHO05D008088 2.8e-91 339.3 279 64.5
MD02G1061500 Malus domestica HOM05D006393 ORTHO05D008088 3.6e-91 339.0 288 63.2
Migut.C00826 Erythranthe guttata HOM05D006393 ORTHO05D008088 8.1e-91 337.8 279 63.8
MSTRG.1197 Avicennia marina HOM05D006393 ORTHO05D008088 1.1e-90 337.4 279 63.8
Nitab4.5_0002551g0020 Nicotiana tabacum HOM05D006393 ORTHO05D008088 1.4e-90 337.0 279 64.5
EL10Ac8g18557 Beta vulgaris HOM05D006393 ORTHO05D008088 1.8e-90 336.7 287 61.3
SGA_v2.0_scaffold92G28235 Striga asiatica HOM05D006393 ORTHO05D008088 1.8e-90 336.7 279 63.8
PGSC0003DMG401029823 Solanum tuberosum HOM05D006393 ORTHO05D008088 2.3e-90 336.3 279 63.8
THA.LOC104815111 Tarenaya hassleriana HOM05D006393 ORTHO05D008088 2.3e-90 336.3 288 63.2
VMungo1215G0586 Vigna mungo HOM05D006393 ORTHO05D008088 2.3e-90 336.3 279 62.7
AUR62033415 Chenopodium quinoa HOM05D006393 ORTHO05D008088 3.1e-90 335.9 283 62.5
Solyc10g079970.2 Solanum lycopersicum HOM05D006393 ORTHO05D008088 4.0e-90 335.5 279 63.8
Lalb_Chr13g0302251 Lupinus albus HOM05D006393 ORTHO05D008088 5.2e-90 335.1 287 60.6
DCAR_010438 Daucus carota HOM05D006393 ORTHO05D008088 1.2e-89 334.0 279 62.0
arahy.Tifrunner.gnm1.ann1.3AE437 Arachis hypogaea HOM05D006393 ORTHO05D008088 3.4e-89 332.4 282 61.7
Ca_21724_v3 Cicer arietinum L. HOM05D006393 ORTHO05D008088 4.4e-89 332.0 279 62.0
Glyma.17G120200 Glycine max HOM05D006393 ORTHO05D008088 4.4e-89 332.0 285 60.4
Psat4g042480 Pisum sativum HOM05D006393 ORTHO05D008088 5.8e-89 331.6 283 61.5
unitig_37.g13035 Utricularia gibba HOM05D006393 ORTHO05D008088 1.3e-88 330.5 279 64.2
arahy.Tifrunner.gnm1.ann1.RZM4QH Arachis hypogaea HOM05D006393 ORTHO05D008088 4.9e-88 328.6 279 61.6
HanXRQChr03g0062141 Helianthus annuus HOM05D006393 ORTHO05D008088 4.9e-88 328.6 283 60.4
Sabra18G0063700 Salix brachista HOM05D006393 ORTHO05D008088 1.1e-87 327.4 279 63.8
Lj4g0026371 Lotus japonicus HOM05D006393 ORTHO05D008088 2.4e-87 326.2 278 61.5
Eucgr.C04142 Eucalyptus grandis HOM05D006393 ORTHO05D008088 9.2e-87 324.3 251 65.3
Zm00001eb106640 Zea mays HOM05D006393 ORTHO05D008088 1.6e-86 323.6 287 57.1
Medtr4g112990 Medicago truncatula HOM05D006393 ORTHO05D008088 4.6e-86 322.0 283 59.7
TPR.G26762 Trifolium pratense HOM05D006393 ORTHO05D008088 1.3e-85 320.5 283 58.7
HPP92_009792 Vanilla planifolia HOM05D006393 ORTHO05D008088 1.3e-85 320.5 283 59.7
Zm00001eb122440 Zea mays HOM05D006393 ORTHO05D008088 1.3e-85 320.5 273 63.4
Os01g0507300 Oryza sativa ssp. japonica HOM05D006393 ORTHO05D008088 2.3e-85 319.7 282 60.6
AUR62011040 Chenopodium quinoa HOM05D006393 ORTHO05D008088 8.6e-85 317.8 264 63.3
Lj7A639G46 Lonicera japonica HOM05D006393 ORTHO05D008088 5.6e-84 315.1 313 55.6
HPP92_008697 Vanilla planifolia HOM05D006393 ORTHO05D008088 2.6e-81 306.2 288 58.0
Nitab4.5_0010615g0010 Nicotiana tabacum HOM05D006393 ORTHO05D008088 3.4e-81 305.8 249 63.9
Os01g0178200 Oryza sativa ssp. japonica HOM05D006393 ORTHO05D008088 1.7e-80 303.5 322 53.1
SMO340G0297 Selaginella moellendorffii HOM05D006393 ORTHO05D008088 1.7e-80 303.5 283 56.2
Lsat_1_v5_gn_7_42880 Lactuca sativa HOM05D006393 ORTHO05D008088 2.9e-80 302.8 283 56.9
Ah.14g081310 Amaranthus hybridus HOM05D006393 ORTHO05D008088 3.8e-80 302.4 350 50.9
FAN23G0113 Fragaria x ananassa HOM05D006393 ORTHO05D008088 1.1e-79 300.8 283 58.7
Mapoly0052s0018 Marchantia polymorpha HOM05D006393 ORTHO05D008088 5.4e-79 298.5 283 55.1
Oeu046267.2 Olea europaea HOM05D006393 ORTHO05D008088 1.0e-77 294.3 240 62.9
Sc07g0007380 Simmondsia chinensis HOM05D006393 ORTHO05D008088 3.6e-75 285.8 236 61.0
Cc06_g09230 Coffea canephora HOM05D006393 ORTHO05D008088 4.0e-74 282.3 236 63.6
Pp3c12_24880 Physcomitrium patens HOM05D006393 ORTHO05D008088 3.4e-73 279.3 283 52.3
Peaxi162Scf00223g01425 Petunia axillaris HOM05D006393 ORTHO05D008088 7.6e-73 278.1 292 55.8
ECA240G0151 Erigeron canadensis HOM05D006393 ORTHO05D008088 7.1e-71 271.6 222 63.5
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 1.6e-67 260.4 196 68.4
CARHR192920 Cardamine hirsuta HOM05D006393 ORTHO05D008088 2.9e-64 249.6 200 64.5
SalBow7G4467 Salvia bowleyana HOM05D006393 ORTHO05D008088 1.6e-62 243.8 279 51.3
Oeu027539.2 Olea europaea HOM05D006393 ORTHO05D008088 2.1e-59 233.4 292 48.3
Peaxi162Scf00223g01424 Petunia axillaris HOM05D006393 ORTHO05D008088 2.2e-56 223.4 223 56.5
CDE07G1479 Ceratophyllum demersum HOM05D006393 ORTHO05D008088 3.7e-51 206.1 156 66.7
PRCOL_00002470 Prasinoderma coloniale HOM05D006393 ORTHO05D008088 4.9e-48 195.7 278 41.4
TAR636G2166 Trochodendron aralioides HOM05D006393 ORTHO05D008088 7.9e-46 188.3 143 68.5
SEGI_23420 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 1.5e-44 184.1 181 52.5
Cre17.g726350 Chlamydomonas reinhardtii HOM05D006393 ORTHO05D008088 4.3e-44 182.6 319 38.6
SEGI_36873 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 9.0e-42 174.9 178 54.5
Cre02.g118200 Chlamydomonas reinhardtii HOM05D006393 ORTHO05D008088 4.6e-38 162.5 334 35.3
SEGI_10855 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 1.9e-31 140.6 189 45.5
MCO12G460 Micromonas commoda HOM05D006393 ORTHO05D008088 3.6e-30 136.3 160 48.1
Eucgr.L03082 Eucalyptus grandis HOM05D006393 ORTHO05D008088 4.7e-30 136.0 125 53.6
Psat6g218400 Pisum sativum HOM05D006393 ORTHO05D008088 5.7e-28 129.0 114 62.3
Glyma.05G012000 Glycine max HOM05D006393 ORTHO05D008088 1.1e-26 124.8 117 59.8
Eucgr.E03680 Eucalyptus grandis HOM05D006393 ORTHO05D008088 2.7e-22 110.2 98 58.2
Zm00001eb342450 Zea mays HOM05D006393 ORTHO05D008088 4.4e-20 102.8 155 40.6
Psat5g214680 Pisum sativum HOM05D006393 ORTHO05D008088 1.3e-19 101.3 91 60.4
vmacro16552 Vaccinium macrocarpon HOM05D006393 ORTHO05D008088 4.4e-12 76.3 145 42.1
SEGI_30446 Sequoiadendron giganteum HOM05D006393 ORTHO05D000979 2.4e-10 70.5 58 60.3
SEGI_14370 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 4.1e-10 69.7 58 58.6
CSS0007542 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 2.1e-06 57.4 179 27.9
Actinidia20331 Actinidia chinensis HOM05D006393 ORTHO05D008088 3.6e-06 56.6 34 76.5
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 4.7e-06 56.2 179 27.9
Os01g0729100 Oryza sativa ssp. japonica HOM05D005699 ORTHO05D007496 4.7e-06 56.2 179 26.3
Hma1.2p1_0050F.1_g028850 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 6.1e-06 55.8 179 25.7
Lj1A824T64 Lonicera japonica HOM05D005699 ORTHO05D007496 8.0e-06 55.5 228 24.1


User provided reference genes

Program Settings