Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 0.0e+00 1095.5 560 100.0
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 4.1e-248 861.3 561 76.1
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.0e-246 856.7 561 75.8
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 3.0e-246 855.1 561 75.8
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 5.6e-245 850.9 560 75.5
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 1.6e-244 849.4 564 74.8
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 1.6e-244 849.4 565 75.0
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 2.3e-243 845.5 565 72.6
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 4.0e-243 844.7 563 73.7
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 2.6e-242 842.0 563 74.2
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 3.4e-242 841.6 560 74.3
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 3.4e-242 841.6 564 74.1
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 5.8e-242 840.9 565 73.3
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 7.5e-242 840.5 565 74.0
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 8.3e-241 837.0 563 73.7
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 9.2e-240 833.6 557 74.5
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 2.0e-239 832.4 557 74.3
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 3.5e-239 831.6 558 74.4
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 3.9e-238 828.2 566 72.8
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 5.0e-238 827.8 566 71.7
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 3.3e-237 825.1 566 72.3
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 5.6e-237 824.3 566 72.1
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 1.6e-236 822.8 549 73.4
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.6e-236 822.8 563 72.3
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 2.1e-236 822.4 548 74.1
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 4.7e-236 821.2 548 73.9
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 8.1e-236 820.5 548 73.9
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 8.1e-236 820.5 558 73.1
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 1.4e-235 819.7 565 73.1
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 1.8e-235 819.3 563 71.2
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 2.3e-235 818.9 632 66.8
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 2.3e-235 818.9 566 71.2
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 8.9e-235 817.0 558 72.6
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 8.9e-235 817.0 550 73.5
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 4.4e-234 814.7 562 71.9
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 1.3e-233 813.1 570 70.4
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 6.4e-233 810.8 556 72.3
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 8.3e-233 810.4 565 70.8
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 3.2e-232 808.5 556 72.1
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 5.4e-232 807.7 565 70.8
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 2.1e-231 805.8 567 70.9
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 2.1e-231 805.8 567 72.1
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 3.5e-231 805.1 557 71.6
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 4.6e-231 804.7 567 72.3
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 7.8e-231 803.9 603 68.0
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 1.0e-230 803.5 557 71.6
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.3e-230 803.1 571 70.8
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 1.7e-230 802.7 539 74.2
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 2.3e-230 802.4 562 70.3
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 5.1e-230 801.2 565 71.3
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 5.1e-230 801.2 565 69.9
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 8.6e-230 800.4 549 71.8
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 2.5e-229 798.9 549 70.9
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 3.3e-229 798.5 564 71.1
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 4.3e-229 798.1 565 69.6
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 4.3e-229 798.1 563 70.2
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 5.6e-229 797.7 564 71.1
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 5.6e-229 797.7 565 69.6
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 9.5e-229 797.0 554 70.9
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 1.2e-228 796.6 543 73.3
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 1.6e-228 796.2 549 70.7
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 2.1e-228 795.8 553 72.3
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 3.6e-228 795.0 564 70.7
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 4.7e-228 794.7 550 71.6
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 8.1e-228 793.9 562 71.2
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.1e-227 793.5 579 69.3
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 2.3e-227 792.3 554 71.5
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 3.1e-227 792.0 556 70.5
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 6.8e-227 790.8 551 71.7
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 6.8e-227 790.8 558 71.5
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 1.2e-226 790.0 554 71.5
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 3.4e-226 788.5 550 71.1
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 3.4e-226 788.5 557 71.3
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 4.4e-226 788.1 553 70.9
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 5.8e-226 787.7 558 72.0
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 7.6e-226 787.3 551 72.1
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 9.9e-226 786.9 556 70.3
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 9.9e-226 786.9 551 71.7
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 3.8e-225 785.0 552 70.7
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 4.9e-225 784.6 551 71.1
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 6.4e-225 784.3 581 66.6
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 1.1e-224 783.5 550 70.4
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 1.4e-224 783.1 553 71.4
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 1.9e-224 782.7 556 70.1
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 2.4e-224 782.3 550 71.1
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 5.4e-224 781.2 555 69.9
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 3.5e-223 778.5 603 66.3
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 3.5e-223 778.5 566 70.0
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 7.8e-223 777.3 550 70.7
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 1.7e-222 776.2 539 70.1
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 1.7e-222 776.2 558 70.8
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 2.3e-222 775.8 552 69.6
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 3.9e-222 775.0 553 69.6
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 3.9e-222 775.0 550 70.4
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 2.5e-221 772.3 603 66.8
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 3.3e-221 771.9 552 69.0
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 4.3e-221 771.5 563 68.4
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 7.3e-221 770.8 550 68.7
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 1.6e-220 769.6 549 70.1
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 1.6e-220 769.6 549 70.1
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 2.8e-220 768.8 550 69.8
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 2.8e-220 768.8 547 70.0
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 2.8e-220 768.8 548 69.9
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 8.1e-220 767.3 549 69.9
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.5e-218 763.1 554 70.9
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 1.1e-216 756.9 540 69.8
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 7.8e-215 750.7 559 68.5
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 1.5e-213 746.5 533 70.2
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 2.5e-213 745.7 597 64.8
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 2.1e-212 742.7 547 68.0
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 4.5e-210 734.9 552 65.2
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 1.4e-208 729.9 520 68.3
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 1.6e-207 726.5 629 60.4
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 1.3e-206 723.4 551 66.1
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 9.6e-205 717.2 567 66.1
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 6.2e-204 714.5 563 65.0
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 7.1e-200 701.0 563 62.7
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 8.2e-196 687.6 452 74.6
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 1.1e-195 687.2 575 62.4
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 9.0e-195 684.1 471 70.9
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 9.0e-195 684.1 500 65.4
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 2.3e-190 669.5 544 62.1
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 1.1e-187 660.6 478 69.0
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 6.5e-185 651.4 481 67.8
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 3.2e-184 649.0 555 60.7
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 8.8e-166 587.8 419 69.7
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 2.8e-156 556.2 392 69.6
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 9.1e-155 551.2 367 74.4
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 7.7e-154 548.1 359 76.3
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 1.0e-153 547.7 395 68.6
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 1.1e-152 544.3 395 68.4
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 7.7e-146 521.5 558 49.3
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 3.3e-136 489.6 528 47.2
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 2.4e-123 446.8 332 68.4
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 4.1e-115 419.5 272 73.5
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 1.9e-107 394.0 274 70.4
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 5.4e-99 365.9 220 78.2
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 9.6e-80 302.0 195 72.8
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 8.2e-79 298.9 200 76.5
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 1.9e-59 234.6 172 66.9
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 1.5e-53 214.9 141 76.6
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 9.7e-48 195.7 152 59.9
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 7.7e-45 186.0 146 62.3
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 4.0e-41 173.7 189 49.7
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 8.8e-41 172.6 118 67.8
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 5.4e-30 136.7 91 79.1
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 2.5e-27 127.9 84 71.4
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 5.2e-25 120.2 96 63.5
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 4.9e-23 113.6 94 59.6
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 8.3e-23 112.8 79 72.2
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 2.0e-21 108.2 83 66.3
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 1.0e-17 95.9 129 40.3
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 5.6e-11 73.6 58 60.3
Pp3c10_16910 Physcomitrium patens HOM05D004765 ORTHO05D315325 1.2e-08 65.9 112 35.7


User provided reference genes

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