Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0081G059 Amborella trichopoda HOM05D001991 ORTHO05D002030 2.5e-131 472.2 255 100.0
Actinidia08128 Actinidia chinensis HOM05D001991 ORTHO05D002030 2.6e-64 249.6 247 61.5
Hma1.2p1_0079F.1_g041070 Hydrangea macrophylla HOM05D001991 ORTHO05D002030 1.3e-63 247.3 250 60.0
Glyma.05G174400 Glycine max HOM05D001991 ORTHO05D002030 6.4e-63 245.0 254 57.5
Lj4g0004810 Lotus japonicus HOM05D001991 ORTHO05D002030 6.4e-63 245.0 243 57.2
Nn3g16681 Nelumbo nucifera HOM05D001991 ORTHO05D002030 8.3e-63 244.6 250 60.0
TPR.G6216 Trifolium pratense HOM05D001991 ORTHO05D002030 1.9e-62 243.4 241 58.5
CANSAT01G2806 Cannabis sativa HOM05D001991 ORTHO05D002030 2.4e-62 243.0 246 58.1
MBI10_g31499_MAGBIO Magnolia biondii HOM05D001991 ORTHO05D002030 3.2e-62 242.7 255 59.6
TWI18G0479 Tripterygium wilfordii HOM05D001991 ORTHO05D002030 1.6e-61 240.4 257 53.7
QL03p057223 Quercus lobata HOM05D001991 ORTHO05D002030 4.6e-61 238.8 257 55.3
TAR629G2755 Trochodendron aralioides HOM05D001991 ORTHO05D002030 1.0e-60 237.7 259 57.9
TWI75G1322 Tripterygium wilfordii HOM05D001991 ORTHO05D002030 1.3e-60 237.3 248 54.8
PSO063G3998 Papaver somniferum HOM05D001991 ORTHO05D002030 1.7e-60 236.9 260 56.9
Duzib248G0408 Durio zibethinus HOM05D001991 ORTHO05D002030 3.9e-60 235.7 248 54.0
Nn4g22575 Nelumbo nucifera HOM05D001991 ORTHO05D002030 3.9e-60 235.7 251 57.4
PSO754G0066 Papaver somniferum HOM05D001991 ORTHO05D002030 3.9e-60 235.7 260 56.2
TAR371G0096 Trochodendron aralioides HOM05D001991 ORTHO05D002030 8.6e-60 234.6 249 58.6
Ca_17780_v3 Cicer arietinum L. HOM05D001991 ORTHO05D002030 1.1e-59 234.2 249 59.0
GSVIVG01000549001 Vitis vinifera HOM05D001991 ORTHO05D002030 1.5e-59 233.8 248 58.5
Glyma.08G131600 Glycine max HOM05D001991 ORTHO05D002030 1.9e-59 233.4 252 56.7
Medtr8g089785 Medicago truncatula HOM05D001991 ORTHO05D002030 4.3e-59 232.3 241 57.7
Eucgr.B03270 Eucalyptus grandis HOM05D001991 ORTHO05D002030 5.6e-59 231.9 247 56.3
Potri.010G048200 Populus trichocarpa HOM05D001991 ORTHO05D002030 5.6e-59 231.9 267 53.6
Carub.0005s0437 Capsella rubella HOM05D001991 ORTHO05D002030 3.6e-58 229.2 255 57.3
Potri.008G185400 Populus trichocarpa HOM05D001991 ORTHO05D002030 3.6e-58 229.2 264 54.9
TWI36G0509 Tripterygium wilfordii HOM05D001991 ORTHO05D002030 3.6e-58 229.2 247 55.5
TAR374G1687 Trochodendron aralioides HOM05D000273 ORTHO05D000198 4.7e-58 228.8 256 57.8
VMungo0251G2038 Vigna mungo HOM05D001991 ORTHO05D002030 4.7e-58 228.8 248 58.1
Sabra08G0140400 Salix brachista HOM05D001991 ORTHO05D002030 6.2e-58 228.4 281 52.0
Hund25397 Selenicereus undatus HOM05D001991 ORTHO05D002030 6.2e-58 228.4 273 52.4
Phvul.002G259400 Phaseolus vulgaris HOM05D001991 ORTHO05D002030 8.1e-58 228.0 255 56.9
Gohir.D01G151800 Gossypium hirsutum HOM05D001991 ORTHO05D002030 1.4e-57 227.3 244 56.6
Gorai.002G188100 Gossypium raimondii HOM05D001991 ORTHO05D002030 1.4e-57 227.3 244 56.1
AT3G26400 Arabidopsis thaliana HOM05D001991 ORTHO05D002030 1.8e-57 226.9 255 55.7
C07p35440 Brassica napus HOM05D001991 ORTHO05D002030 1.8e-57 226.9 256 55.5
BolC7t44068H Brassica oleracea HOM05D001991 ORTHO05D002030 1.8e-57 226.9 256 55.5
Ah.03g133340 Amaranthus hybridus HOM05D001991 ORTHO05D002030 3.1e-57 226.1 251 55.4
Manes.12G021400 Manihot esculenta HOM05D001991 ORTHO05D002030 3.1e-57 226.1 263 56.3
arahy.Tifrunner.gnm1.ann1.R6BV62 Arachis hypogaea HOM05D001991 ORTHO05D002030 4.0e-57 225.7 230 55.2
Dinv14734 Davidia involucrata HOM05D001991 ORTHO05D002030 4.0e-57 225.7 249 55.4
Cpa.g.sc33.43 Carica papaya HOM05D001991 ORTHO05D002030 6.8e-57 224.9 250 54.8
Haze_12267 Corylus avellana HOM05D001991 ORTHO05D002030 8.9e-57 224.6 254 51.6
Lalb_Chr12g0204031 Lupinus albus HOM05D001991 ORTHO05D002030 8.9e-57 224.6 261 53.3
AL5G15170 Arabidopsis lyrata HOM05D001991 ORTHO05D002030 1.2e-56 224.2 254 55.9
A06p42040 Brassica napus HOM05D001991 ORTHO05D002030 1.2e-56 224.2 256 56.2
CiPaw.06G066600 Carya illinoinensis HOM05D001991 ORTHO05D002030 1.2e-56 224.2 254 53.5
COL.COLO4_23473 Corchorus olitorius HOM05D001991 ORTHO05D002030 1.2e-56 224.2 255 52.9
Duzib251G0379 Durio zibethinus HOM05D001991 ORTHO05D002030 1.5e-56 223.8 246 54.1
CiPaw.05G179600 Carya illinoinensis HOM05D001991 ORTHO05D002030 2.0e-56 223.4 252 51.6
Gohir.A03G133200 Gossypium hirsutum HOM05D001991 ORTHO05D002030 2.0e-56 223.4 239 54.4
EL10Ac6g13868 Beta vulgaris HOM05D001991 ORTHO05D002030 4.4e-56 222.2 258 51.9
BraA06t27121Z Brassica rapa HOM05D001991 ORTHO05D002030 4.4e-56 222.2 251 56.6
Gorai.005G176700 Gossypium raimondii HOM05D001991 ORTHO05D002030 4.4e-56 222.2 239 54.4
Cfa009231 Carpinus fangiana HOM05D001991 ORTHO05D000198 7.5e-56 221.5 258 50.8
Thecc.02G262800 Theobroma cacao HOM05D001991 ORTHO05D002030 9.8e-56 221.1 254 53.5
CARHR013350 Cardamine hirsuta HOM05D001991 ORTHO05D002030 1.3e-55 220.7 262 52.7
Ciclev10031235m.g Citrus clementina HOM05D001991 ORTHO05D002030 1.3e-55 220.7 246 56.5
Gohir.D02G157500 Gossypium hirsutum HOM05D001991 ORTHO05D002030 1.3e-55 220.7 239 54.4
Manes.13G022300 Manihot esculenta HOM05D001991 ORTHO05D002030 1.7e-55 220.3 252 54.0
HPP92_024687 Vanilla planifolia HOM05D001991 ORTHO05D002030 2.2e-55 219.9 253 54.9
AL1G24670 Arabidopsis lyrata HOM05D001991 ORTHO05D002030 2.9e-55 219.5 262 51.5
Sp1g11570 Schrenkiella parvula HOM05D001991 ORTHO05D002030 3.7e-55 219.2 261 52.9
Aa31LG2G6130 Aethionema arabicum HOM05D001991 ORTHO05D002030 6.4e-55 218.4 257 53.7
AUR62024243 Chenopodium quinoa HOM05D001991 ORTHO05D002030 8.3e-55 218.0 251 52.2
Thhalv10003946m.g Eutrema salsugineum HOM05D001991 ORTHO05D002030 8.3e-55 218.0 252 56.3
PGR102G1816 Punica granatum HOM05D001991 ORTHO05D002030 8.3e-55 218.0 251 51.4
Lj6C814T13 Lonicera japonica HOM05D001991 ORTHO05D002030 1.1e-54 217.6 251 55.4
AT1G13020 Arabidopsis thaliana HOM05D001991 ORTHO05D002030 1.4e-54 217.2 262 51.5
AUR62005498 Chenopodium quinoa HOM05D001991 ORTHO05D002030 1.4e-54 217.2 251 52.6
Prupe.1G246800 Prunus persica HOM05D001991 ORTHO05D002030 1.9e-54 216.9 259 52.1
TAR622G0091 Trochodendron aralioides HOM05D001991 ORTHO05D002030 3.2e-54 216.1 251 55.4
CARHR147420 Cardamine hirsuta HOM05D001991 ORTHO05D002030 4.1e-54 215.7 254 55.5
THA.LOC104825667 Tarenaya hassleriana HOM05D001991 ORTHO05D002030 1.2e-53 214.2 254 54.3
BcaC03g17339 Brassica carinata HOM05D001991 ORTHO05D002030 2.1e-53 213.4 248 52.4
Lalb_Chr13g0295851 Lupinus albus HOM05D001991 ORTHO05D002030 2.1e-53 213.4 255 53.3
MD16G1099600 Malus domestica HOM05D001991 ORTHO05D002030 2.7e-53 213.0 260 52.3
Sp2g15550 Schrenkiella parvula HOM05D001991 ORTHO05D002030 3.5e-53 212.6 255 53.7
ClCG08G017650 Citrullus lanatus HOM05D001991 ORTHO05D002030 7.8e-53 211.5 259 51.7
Duzib268G1304 Durio zibethinus HOM05D001991 ORTHO05D002030 7.8e-53 211.5 257 51.4
Rhsim12G0108800 Rhododendron simsii HOM05D001991 ORTHO05D002030 7.8e-53 211.5 262 51.1
A08p32510 Brassica napus HOM05D001991 ORTHO05D002030 1.3e-52 210.7 254 55.9
BraA08t35175Z Brassica rapa HOM05D001991 ORTHO05D002030 1.3e-52 210.7 247 53.8
PGR119G1839 Punica granatum HOM05D001991 ORTHO05D002030 2.3e-52 209.9 230 54.3
Rhsim12G0039700 Rhododendron simsii HOM05D001991 ORTHO05D002030 2.3e-52 209.9 253 49.8
Carub.0001s1277 Capsella rubella HOM05D001991 ORTHO05D002030 3.9e-52 209.1 254 53.1
Cc11_g15900 Coffea canephora HOM05D001991 ORTHO05D002030 3.9e-52 209.1 252 51.2
arahy.Tifrunner.gnm1.ann1.2WLS1Y Arachis hypogaea HOM05D001991 ORTHO05D002030 5.1e-52 208.8 260 48.1
Lalb_Chr07g0185411 Lupinus albus HOM05D001991 ORTHO05D002030 5.1e-52 208.8 252 53.6
THA.LOC104805280 Tarenaya hassleriana HOM05D001991 ORTHO05D002030 5.1e-52 208.8 252 51.6
THA.LOC104824007 Tarenaya hassleriana HOM05D001991 ORTHO05D002030 5.1e-52 208.8 252 52.0
CsaV3_2G024990 Cucumis sativus L. HOM05D001991 ORTHO05D002030 6.6e-52 208.4 261 50.6
Sc04g0009620 Simmondsia chinensis HOM05D001991 ORTHO05D002030 6.6e-52 208.4 247 53.4
arahy.Tifrunner.gnm1.ann1.YC9QB8 Arachis hypogaea HOM05D001991 ORTHO05D002030 1.1e-51 207.6 247 53.8
arahy.Tifrunner.gnm1.ann1.FAC3HW Arachis hypogaea HOM05D001991 ORTHO05D002030 1.9e-51 206.8 247 53.4
C08p15780 Brassica napus HOM05D001991 ORTHO05D002030 7.3e-51 204.9 255 51.8
BolC8t49204H Brassica oleracea HOM05D001991 ORTHO05D002030 7.3e-51 204.9 255 51.8
RcHm_v2.0_Chr4g0433421 Rosa chinensis HOM05D001991 ORTHO05D002030 1.6e-50 203.8 248 52.4
CSS0025753 Camellia sinensis var. sinensis HOM05D001991 ORTHO05D002030 6.2e-50 201.8 229 53.7
Aa31LG1G1780 Aethionema arabicum HOM05D001991 ORTHO05D002030 8.1e-50 201.4 253 51.0
Thhalv10007279m.g Eutrema salsugineum HOM05D001991 ORTHO05D002030 8.1e-50 201.4 263 49.4
FAN22G0770 Fragaria x ananassa HOM05D001991 ORTHO05D002030 8.1e-50 201.4 236 53.8
Gohir.A01G163000 Gossypium hirsutum HOM05D001991 ORTHO05D002030 8.1e-50 201.4 238 53.8
Atru.chr11.2159 Acer truncatum HOM05D001991 ORTHO05D002030 1.1e-49 201.1 250 51.6
Peaxi162Scf00128g00454 Petunia axillaris HOM05D001991 ORTHO05D002030 1.1e-49 201.1 220 54.5
FAN07G0001 Fragaria x ananassa HOM05D001991 ORTHO05D002030 1.4e-49 200.7 243 52.7
FAN12G4314 Fragaria x ananassa HOM05D001991 ORTHO05D002030 1.4e-49 200.7 243 52.3
CDE09G0346 Ceratophyllum demersum HOM05D000273 ORTHO05D000198 2.3e-49 199.9 267 49.8
Aqoxy5G03724 Aquilegia oxysepala HOM05D001991 ORTHO05D002030 4.0e-49 199.1 273 48.7
FAN12G2989 Fragaria x ananassa HOM05D001991 ORTHO05D002030 1.2e-48 197.6 243 51.9
FAN17G1615 Fragaria x ananassa HOM05D001991 ORTHO05D002030 1.2e-48 197.6 243 51.4
FvH4_4g26000 Fragaria vesca HOM05D001991 ORTHO05D002030 2.0e-48 196.8 243 51.9
MELO3C010696.2 Cucumis melo HOM05D001991 ORTHO05D002030 9.9e-48 194.5 289 45.3
Solyc05g013700.4 Solanum lycopersicum HOM05D001991 ORTHO05D002030 1.3e-47 194.1 226 52.7
Sopen05g008610 Solanum pennellii HOM05D001991 ORTHO05D002030 1.7e-47 193.7 226 52.7
HanXRQChr12g0371941 Helianthus annuus HOM05D001991 ORTHO05D002030 2.2e-47 193.4 288 44.4
vmacro16182 Vaccinium macrocarpon HOM05D001991 ORTHO05D002030 4.9e-47 192.2 293 47.1
PGSC0003DMG400018596 Solanum tuberosum HOM05D001991 ORTHO05D002030 1.1e-46 191.0 226 52.2
CAN.G272.2 Capsicum annuum HOM05D001991 ORTHO05D002030 1.4e-46 190.7 224 50.4
Os04g0480100 Oryza sativa ssp. japonica HOM05D001991 ORTHO05D002030 1.7e-44 183.7 260 51.9
Migut.K00613 Erythranthe guttata HOM05D001991 ORTHO05D002030 3.9e-44 182.6 290 42.4
BolC2t11380H Brassica oleracea HOM05D001991 ORTHO05D002030 5.1e-44 182.2 248 47.2
C02p53060 Brassica napus HOM05D001991 ORTHO05D002030 6.6e-44 181.8 176 58.0
C08p46930 Brassica napus HOM05D001991 ORTHO05D002030 1.1e-43 181.0 221 53.4
BolC8t52231H Brassica oleracea HOM05D001991 ORTHO05D002030 1.1e-43 181.0 221 53.4
Migut.E00212 Erythranthe guttata HOM05D001991 ORTHO05D002030 1.5e-43 180.6 207 49.8
SEGI_18333 Sequoiadendron giganteum HOM05D001991 ORTHO05D002030 2.5e-43 179.9 245 50.2
A09p63480 Brassica napus HOM05D001991 ORTHO05D002030 9.6e-43 177.9 272 46.0
BraA09t41698Z Brassica rapa HOM05D001991 ORTHO05D002030 2.8e-42 176.4 272 45.6
Os02g0595800 Oryza sativa ssp. japonica HOM05D001991 ORTHO05D002030 6.2e-42 175.3 256 50.0
CDE02G2889 Ceratophyllum demersum HOM05D001991 ORTHO05D002030 1.4e-41 174.1 220 50.9
Nitab4.5_0002653g0010 Nicotiana tabacum HOM05D001991 ORTHO05D002030 1.8e-41 173.7 286 42.7
C02p53040 Brassica napus HOM05D001991 ORTHO05D002030 2.4e-41 173.3 176 56.2
MSTRG.7948 Avicennia marina HOM05D001991 ORTHO05D002030 3.1e-41 172.9 208 51.0
Nitab4.5_0000229g0070 Nicotiana tabacum HOM05D001991 ORTHO05D002030 8.9e-41 171.4 278 42.1
Lsat_1_v5_gn_8_152681 Lactuca sativa HOM05D001991 ORTHO05D002030 1.2e-40 171.0 245 48.6
MSTRG.558 Avicennia marina HOM05D001991 ORTHO05D002030 1.5e-40 170.6 214 50.0
SalBow8G0331 Salvia bowleyana HOM05D001991 ORTHO05D002030 2.6e-40 169.9 344 37.8
Zm00001eb424960 Zea mays HOM05D001991 ORTHO05D002030 7.6e-40 168.3 255 49.4
Lj3A1060G69 Lonicera japonica HOM05D001991 ORTHO05D002030 9.9e-40 167.9 279 41.6
SGA_v2.0_scaffold87G27064 Striga asiatica HOM05D001991 ORTHO05D002030 1.3e-39 167.5 286 41.6
Zm00001eb079540 Zea mays HOM05D001991 ORTHO05D002030 4.9e-39 165.6 254 48.8
BcaC03g17365 Brassica carinata HOM05D001991 ORTHO05D002030 1.9e-38 163.7 243 44.9
ECA233G4229 Erigeron canadensis HOM05D003359 ORTHO05D004472 7.1e-38 161.8 189 52.4
Oeu059773.2 Olea europaea HOM05D001991 ORTHO05D002030 1.6e-37 160.6 339 37.2
SGA_v2.0_scaffold63G21739 Striga asiatica HOM05D001991 ORTHO05D002030 2.1e-37 160.2 328 38.7
AagrBONN_evm.TU.Sc2ySwM_117.3963 Anthoceros agrestis HOM05D001991 ORTHO05D002030 3.1e-33 146.4 200 47.5
SEGI_31383 Sequoiadendron giganteum HOM05D001991 ORTHO05D002030 1.5e-32 144.1 195 53.3
unitig_52.g17179 Utricularia gibba HOM05D001991 ORTHO05D002030 5.8e-32 142.1 194 44.8
Peaxi162Scf00074g01126 Petunia axillaris HOM05D001991 ORTHO05D002030 1.3e-31 141.0 223 43.9
Actinidia26739 Actinidia chinensis HOM05D001991 ORTHO05D002030 2.9e-31 139.8 143 57.3
Lsat_1_v5_gn_4_3980 Lactuca sativa HOM05D001991 ORTHO05D002030 4.2e-30 136.0 230 41.7
Zm00001eb246120 Zea mays HOM05D001991 ORTHO05D002030 4.6e-29 132.5 249 39.4
Sabra10G0020800 Salix brachista HOM05D003288 ORTHO05D003734 6.0e-29 132.1 149 53.7
CBR_g935 Chara braunii HOM05D001991 ORTHO05D002030 1.7e-28 130.6 291 37.5
vmacro01120 Vaccinium macrocarpon HOM05D001991 ORTHO05D002030 8.1e-26 121.7 144 51.4
Psat7g059440 Pisum sativum HOM05D001991 ORTHO05D002030 1.5e-24 117.5 107 63.6
Actinidia01358 Actinidia chinensis HOM05D001991 ORTHO05D002030 2.0e-24 117.1 115 62.6
MD13G1098600 Malus domestica HOM05D001991 ORTHO05D002030 2.0e-24 117.1 242 38.4
DCAR_026504 Daucus carota HOM05D001991 ORTHO05D002030 8.4e-23 111.7 107 60.7
Dinv15212 Davidia involucrata HOM05D001991 ORTHO05D002030 8.4e-23 111.7 108 62.0
Hma1.2p1_0815F.1_g222670 Hydrangea macrophylla HOM05D001991 ORTHO05D002030 1.1e-22 111.3 111 58.6
CSS0027226 Camellia sinensis var. sinensis HOM05D001991 ORTHO05D002030 2.4e-22 110.2 109 60.6
Oeu027569.1 Olea europaea HOM05D001991 ORTHO05D002030 1.2e-21 107.8 115 51.3
Sabra10G0020600 Salix brachista HOM05D001991 ORTHO05D002030 2.1e-21 107.1 121 55.4
vmacro01119 Vaccinium macrocarpon HOM05D001991 ORTHO05D002030 2.7e-21 106.7 113 52.2
C02p52860 Brassica napus HOM05D003359 ORTHO05D004472 7.9e-21 105.1 169 45.0
CSS0015590 Camellia sinensis var. sinensis HOM05D001991 ORTHO05D002030 7.9e-21 105.1 142 50.7
DCAR_024421 Daucus carota HOM05D001991 ORTHO05D002030 3.0e-20 103.2 108 51.9
Aqoxy5G03723 Aquilegia oxysepala HOM05D001991 ORTHO05D002030 8.7e-20 101.7 106 51.9
SEGI_18854 Sequoiadendron giganteum HOM05D001991 ORTHO05D002030 1.1e-19 101.3 111 52.3
Actinidia01357 Actinidia chinensis HOM05D001991 ORTHO05D002030 4.3e-19 99.4 107 53.3
Oeu059772.1 Olea europaea HOM05D000273 ORTHO05D000198 9.6e-19 98.2 145 46.2
SEGI_03036 Sequoiadendron giganteum HOM05D001991 ORTHO05D002030 9.6e-19 98.2 239 36.8
BcaB08g34234 Brassica carinata HOM05D001991 ORTHO05D002030 1.5e-16 90.9 294 28.9
SMO239G0014 Selaginella moellendorffii HOM05D001991 ORTHO05D002030 1.4e-14 84.3 129 45.0
Mapoly0057s0064 Marchantia polymorpha HOM05D001991 ORTHO05D002030 9.3e-14 81.6 123 42.3
Hma1.2p1_3236F.1_g334280 Hydrangea macrophylla HOM05D001991 ORTHO05D002030 1.8e-12 77.4 74 60.8
SMO230G0025 Selaginella moellendorffii HOM05D001991 ORTHO05D002030 5.7e-11 72.4 153 38.6
BcaNung06887 Brassica carinata HOM05D001991 ORTHO05D002030 6.3e-10 68.9 92 50.0
Cre16.g688050 Chlamydomonas reinhardtii HOM05D001991 ORTHO05D002030 2.0e-08 63.9 197 33.5
HPP92_006183 Vanilla planifolia HOM05D001991 ORTHO05D002030 5.8e-08 62.4 141 41.1
Pp3c3_35640 Physcomitrium patens HOM05D001991 ORTHO05D002030 2.9e-07 60.1 112 42.0
Pp3c3_35650 Physcomitrium patens HOM05D001991 ORTHO05D002030 2.9e-07 60.1 112 42.0
MCO05G149 Micromonas commoda HOM05D001991 ORTHO05D002030 8.4e-07 58.5 154 34.4


User provided reference genes

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