Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0081G027 Amborella trichopoda HOM05D000059 ORTHO05D064651 1.8e-72 275.8 135 100.0
ATR0681G294 Amborella trichopoda HOM05D000059 ORTHO05D000528 7.3e-26 120.9 68 86.8
Atru.chr8.2253 Acer truncatum HOM05D000059 ORTHO05D000528 2.6e-15 85.9 74 59.5
Ciclev10011471m.g Citrus clementina HOM05D000059 ORTHO05D000528 4.5e-15 85.1 70 61.4
Sed0005754 Sechium edule HOM05D000059 ORTHO05D000528 9.9e-15 84.0 70 61.4
Sed0010114 Sechium edule HOM05D000059 ORTHO05D000528 9.9e-15 84.0 70 61.4
Oeu005174.1 Olea europaea HOM05D000059 ORTHO05D000528 1.7e-14 83.2 73 63.0
FAN02G2189 Fragaria x ananassa HOM05D000059 ORTHO05D000528 2.9e-14 82.4 70 60.0
Manes.09G106000 Manihot esculenta HOM05D000059 ORTHO05D000528 3.8e-14 82.0 70 60.0
QL07p035472 Quercus lobata HOM05D000059 ORTHO05D000528 3.8e-14 82.0 70 58.6
COL.COLO4_14522 Corchorus olitorius HOM05D000059 ORTHO05D000528 4.9e-14 81.6 70 60.0
Duzib093G0891 Durio zibethinus HOM05D000059 ORTHO05D000528 4.9e-14 81.6 70 60.0
MD04G1154500 Malus domestica HOM05D000059 ORTHO05D000528 4.9e-14 81.6 70 60.0
Manes.08G092800 Manihot esculenta HOM05D000059 ORTHO05D000528 4.9e-14 81.6 70 61.4
Thecc.05G014900 Theobroma cacao HOM05D000059 ORTHO05D000528 4.9e-14 81.6 70 58.6
FvH4_6g11340 Fragaria vesca HOM05D000059 ORTHO05D000528 6.4e-14 81.3 70 60.0
FAN05G1130 Fragaria x ananassa HOM05D000059 ORTHO05D000528 6.4e-14 81.3 70 60.0
FAN09G2560 Fragaria x ananassa HOM05D000059 ORTHO05D000528 6.4e-14 81.3 70 60.0
FAN14G0429 Fragaria x ananassa HOM05D000059 ORTHO05D000528 6.4e-14 81.3 70 60.0
FAN14G3603 Fragaria x ananassa HOM05D000059 ORTHO05D000528 6.4e-14 81.3 70 60.0
MD12G1168200 Malus domestica HOM05D000059 ORTHO05D000528 6.4e-14 81.3 70 58.6
TWI74G0076 Tripterygium wilfordii HOM05D000059 ORTHO05D000528 6.4e-14 81.3 70 60.0
CiPaw.09G210100 Carya illinoinensis HOM05D000059 ORTHO05D000528 8.4e-14 80.9 70 58.6
Cpa.g.sc11.131 Carica papaya HOM05D000059 ORTHO05D000528 1.1e-13 80.5 70 58.6
Cfa017196 Carpinus fangiana HOM05D000059 ORTHO05D000528 1.1e-13 80.5 70 58.6
CDE04G2725 Ceratophyllum demersum HOM05D000059 ORTHO05D000528 1.1e-13 80.5 70 62.9
Haze_21012 Corylus avellana HOM05D000059 ORTHO05D000528 1.1e-13 80.5 70 58.6
Duzib128G0038 Durio zibethinus HOM05D000059 ORTHO05D000528 1.1e-13 80.5 70 58.6
Gohir.A04G090900 Gossypium hirsutum HOM05D000059 ORTHO05D000528 1.1e-13 80.5 70 58.6
Gohir.D04G130900 Gossypium hirsutum HOM05D000059 ORTHO05D000528 1.4e-13 80.1 70 58.6
Gorai.012G114600 Gossypium raimondii HOM05D000059 ORTHO05D000528 1.4e-13 80.1 70 58.6
TWI53G0461 Tripterygium wilfordii HOM05D000059 ORTHO05D000528 1.4e-13 80.1 70 58.6
Thhalv10010284m.g Eutrema salsugineum HOM05D000059 ORTHO05D000528 1.9e-13 79.7 75 54.7
Prupe.6G278500 Prunus persica HOM05D000059 ORTHO05D000528 1.9e-13 79.7 70 58.6
Psat3g127600 Pisum sativum HOM05D000059 ORTHO05D000528 2.4e-13 79.3 76 55.3
RcHm_v2.0_Chr3g0462921 Rosa chinensis HOM05D000059 ORTHO05D000528 2.4e-13 79.3 70 58.6
ClCG10G022180 Citrullus lanatus HOM05D000059 ORTHO05D000528 3.2e-13 79.0 70 58.6
MELO3C009161.2 Cucumis melo HOM05D000059 ORTHO05D000528 3.2e-13 79.0 70 58.6
CsaV3_3G033720 Cucumis sativus L. HOM05D000059 ORTHO05D000528 3.2e-13 79.0 70 58.6
AL5G32310 Arabidopsis lyrata HOM05D000059 ORTHO05D000528 4.2e-13 78.6 75 53.3
BcaB01g00410 Brassica carinata HOM05D000059 ORTHO05D000528 4.2e-13 78.6 71 56.3
BcaB01g00471 Brassica carinata HOM05D000059 ORTHO05D000528 4.2e-13 78.6 71 56.3
A09p44990 Brassica napus HOM05D000059 ORTHO05D000528 4.2e-13 78.6 71 56.3
BolC8t50323H Brassica oleracea HOM05D000059 ORTHO05D000528 4.2e-13 78.6 71 56.3
BraA09t39959Z Brassica rapa HOM05D000059 ORTHO05D000528 4.2e-13 78.6 71 56.3
Duzib106G2007 Durio zibethinus HOM05D000059 ORTHO05D000528 4.2e-13 78.6 70 57.1
Oeu054395.2 Olea europaea HOM05D000059 ORTHO05D000528 4.2e-13 78.6 73 60.3
Sabra06G0078000 Salix brachista HOM05D000059 ORTHO05D000528 4.2e-13 78.6 75 54.7
Sp5g10420 Schrenkiella parvula HOM05D000059 ORTHO05D000528 4.2e-13 78.6 75 53.3
Aqoxy2G00873 Aquilegia oxysepala HOM05D000059 ORTHO05D000528 5.5e-13 78.2 80 53.8
Carub.0005s1820 Capsella rubella HOM05D000059 ORTHO05D000528 5.5e-13 78.2 75 53.3
Ca_05942_v3 Cicer arietinum L. HOM05D000059 ORTHO05D000528 5.5e-13 78.2 76 55.3
AT3G51850 Arabidopsis thaliana HOM05D000059 ORTHO05D000528 7.1e-13 77.8 75 53.3
MSTRG.5569 Avicennia marina HOM05D000059 ORTHO05D000528 7.1e-13 77.8 72 59.7
CARHR161480 Cardamine hirsuta HOM05D000059 ORTHO05D000528 7.1e-13 77.8 71 56.3
Cc06_g01250 Coffea canephora HOM05D000059 ORTHO05D000528 7.1e-13 77.8 75 56.0
Gohir.A11G329300 Gossypium hirsutum HOM05D000059 ORTHO05D000528 7.1e-13 77.8 70 57.1
Gohir.D11G348400 Gossypium hirsutum HOM05D000059 ORTHO05D000528 7.1e-13 77.8 70 57.1
Gorai.007G378700 Gossypium raimondii HOM05D000059 ORTHO05D000528 7.1e-13 77.8 70 57.1
Nn2g10856 Nelumbo nucifera HOM05D000059 ORTHO05D000528 7.1e-13 77.8 75 54.7
THA.LOC104823380 Tarenaya hassleriana HOM05D000059 ORTHO05D000528 7.1e-13 77.8 75 53.3
A04p07470 Brassica napus HOM05D000059 ORTHO05D000528 9.3e-13 77.4 75 54.7
BraA04t16442Z Brassica rapa HOM05D000059 ORTHO05D000528 9.3e-13 77.4 75 54.7
Potri.006G101300 Populus trichocarpa HOM05D000059 ORTHO05D000528 9.3e-13 77.4 75 53.3
SGA_v2.0_scaffold110G31211 Striga asiatica HOM05D000059 ORTHO05D000528 9.3e-13 77.4 72 58.3
Aa31sc318G20 Aethionema arabicum HOM05D000059 ORTHO05D000528 1.2e-12 77.0 75 52.0
Lj3A952T81 Lonicera japonica HOM05D000059 ORTHO05D000528 1.2e-12 77.0 74 55.4
THA.LOC104805913 Tarenaya hassleriana HOM05D000059 ORTHO05D000528 1.2e-12 77.0 75 53.3
Lalb_Chr07g0193631 Lupinus albus HOM05D000059 ORTHO05D000528 1.6e-12 76.6 72 58.3
Sabra16G0113300 Salix brachista HOM05D000059 ORTHO05D000528 1.6e-12 76.6 75 53.3
MSTRG.19008 Avicennia marina HOM05D000059 ORTHO05D000528 2.1e-12 76.3 72 58.3
C08p27090 Brassica napus HOM05D000059 ORTHO05D000528 2.1e-12 76.3 71 54.9
CANSAT35G1321 Cannabis sativa HOM05D000059 ORTHO05D000528 2.1e-12 76.3 70 57.1
Migut.J00155 Erythranthe guttata HOM05D000059 ORTHO05D000528 2.1e-12 76.3 76 56.6
PGR031G3331 Punica granatum HOM05D000059 ORTHO05D000528 2.1e-12 76.3 74 50.0
Dinv07756 Davidia involucrata HOM05D000059 ORTHO05D000528 2.7e-12 75.9 73 57.5
Lj2A74G73 Lonicera japonica HOM05D000059 ORTHO05D000528 2.7e-12 75.9 77 54.5
Oeu063401.1 Olea europaea HOM05D000059 ORTHO05D000528 2.7e-12 75.9 73 57.5
BcaB01g00411 Brassica carinata HOM05D000059 ORTHO05D000528 3.5e-12 75.5 71 54.9
CiPaw.10G157000 Carya illinoinensis HOM05D000059 ORTHO05D000528 3.5e-12 75.5 70 55.7
BcaC02g09299 Brassica carinata HOM05D000059 ORTHO05D000528 4.6e-12 75.1 75 52.0
BcaC06g33354 Brassica carinata HOM05D000059 ORTHO05D000528 4.6e-12 75.1 71 54.9
C04p41130 Brassica napus HOM05D000059 ORTHO05D000528 4.6e-12 75.1 75 52.0
BolC4t25695H Brassica oleracea HOM05D000059 ORTHO05D000528 4.6e-12 75.1 75 52.0
Lalb_Chr13g0291961 Lupinus albus HOM05D000059 ORTHO05D000528 6.0e-12 74.7 71 54.9
Solyc09g005550.3 Solanum lycopersicum HOM05D000059 ORTHO05D000528 7.9e-12 74.3 73 53.4
Sopen09g001460 Solanum pennellii HOM05D000059 ORTHO05D000528 7.9e-12 74.3 73 53.4
SGA_v2.0_scaffold240G44089 Striga asiatica HOM05D000059 ORTHO05D000528 7.9e-12 74.3 72 55.6
TAR636G1781 Trochodendron aralioides HOM05D000059 ORTHO05D000528 7.9e-12 74.3 75 57.3
BcaC06g33010 Brassica carinata HOM05D000059 ORTHO05D000528 1.0e-11 73.9 71 53.5
CAN.G1055.1 Capsicum annuum HOM05D000059 ORTHO05D000528 1.0e-11 73.9 72 55.6
Hma1.2p1_0362F.1_g136360 Hydrangea macrophylla HOM05D000059 ORTHO05D000528 1.0e-11 73.9 75 54.7
Lsat_1_v5_gn_9_34801 Lactuca sativa HOM05D000059 ORTHO05D000528 1.0e-11 73.9 72 58.3
C07p46630 Brassica napus HOM05D000059 ORTHO05D000528 1.3e-11 73.6 71 53.5
BolC7t45178H Brassica oleracea HOM05D000059 ORTHO05D000528 1.3e-11 73.6 71 53.5
CSS0024112 Camellia sinensis var. sinensis HOM05D000059 ORTHO05D000528 1.8e-11 73.2 75 56.0
Migut.L02018 Erythranthe guttata HOM05D000059 ORTHO05D000528 1.8e-11 73.2 72 55.6
Peaxi162Scf00009g00162 Petunia axillaris HOM05D000059 ORTHO05D000528 1.8e-11 73.2 71 56.3
A03p48530 Brassica napus HOM05D000059 ORTHO05D000528 2.3e-11 72.8 71 53.5
Nitab4.5_0010107g0010 Nicotiana tabacum HOM05D000059 ORTHO05D000528 2.3e-11 72.8 73 54.8
Potri.016G117200 Populus trichocarpa HOM05D000059 ORTHO05D000528 2.3e-11 72.8 75 52.0
Actinidia11579 Actinidia chinensis HOM05D000059 ORTHO05D000528 3.0e-11 72.4 73 57.5
Actinidia29094 Actinidia chinensis HOM05D000059 ORTHO05D000528 3.0e-11 72.4 74 55.4
BcaB02g08600 Brassica carinata HOM05D000059 ORTHO05D000528 3.0e-11 72.4 76 51.3
BraA03t13958Z Brassica rapa HOM05D000059 ORTHO05D000528 3.0e-11 72.4 71 53.5
Lj1g0006476 Lotus japonicus HOM05D000059 ORTHO05D000528 3.0e-11 72.4 77 50.6
Nitab4.5_0000770g0090 Nicotiana tabacum HOM05D000059 ORTHO05D000528 3.9e-11 72.0 73 53.4
Nitab4.5_0007818g0010 Nicotiana tabacum HOM05D000059 ORTHO05D000528 3.9e-11 72.0 77 53.2
arahy.Tifrunner.gnm1.ann1.ME1UG1 Arachis hypogaea HOM05D000059 ORTHO05D000528 5.1e-11 71.6 75 52.0
Nitab4.5_0000490g0030 Nicotiana tabacum HOM05D000059 ORTHO05D000528 6.7e-11 71.2 77 49.4
PSO339G1707 Papaver somniferum HOM05D000059 ORTHO05D000528 6.7e-11 71.2 73 56.2
PSO801G0766 Papaver somniferum HOM05D000059 ORTHO05D000528 6.7e-11 71.2 73 56.2
Lsat_1_v5_gn_5_149341 Lactuca sativa HOM05D000059 ORTHO05D000528 8.7e-11 70.9 75 54.7
arahy.Tifrunner.gnm1.ann1.02U7QK Arachis hypogaea HOM05D000059 ORTHO05D000528 1.1e-10 70.5 75 50.7
HanXRQChr16g0510531 Helianthus annuus HOM05D000059 ORTHO05D000528 1.1e-10 70.5 75 56.0
Lsat_1_v5_gn_8_101300 Lactuca sativa HOM05D000059 ORTHO05D000528 1.9e-10 69.7 75 54.7
CSS0027370 Camellia sinensis var. sinensis HOM05D000059 ORTHO05D000528 2.5e-10 69.3 77 53.2
DCAR_018699 Daucus carota HOM05D000059 ORTHO05D000528 2.5e-10 69.3 71 59.2
DCAR_015407 Daucus carota HOM05D000059 ORTHO05D000528 3.3e-10 68.9 71 54.9
Eucgr.A00519 Eucalyptus grandis HOM05D000059 ORTHO05D000528 3.3e-10 68.9 83 45.8
Glyma.07G151000 Glycine max HOM05D000059 ORTHO05D000528 3.3e-10 68.9 76 48.7
Nitab4.5_0007414g0030 Nicotiana tabacum HOM05D000059 ORTHO05D000528 3.3e-10 68.9 77 48.1
CSS0014165 Camellia sinensis var. sinensis HOM05D000059 ORTHO05D000528 4.3e-10 68.6 77 49.4
CAN.G283.11 Capsicum annuum HOM05D000059 ORTHO05D000528 4.3e-10 68.6 74 51.4
Phvul.008G098400 Phaseolus vulgaris HOM05D000059 ORTHO05D000528 5.6e-10 68.2 74 50.0
VMungo1383G2799 Vigna mungo HOM05D000059 ORTHO05D000528 5.6e-10 68.2 74 50.0
Medtr7g068710 Medicago truncatula HOM05D000059 ORTHO05D000528 1.3e-09 67.0 73 47.9
Glyma.18G202100 Glycine max HOM05D000059 ORTHO05D000528 1.6e-09 66.6 77 46.8
TAR633G2143 Trochodendron aralioides HOM05D000059 ORTHO05D000528 1.6e-09 66.6 74 50.0
Nn2g13143 Nelumbo nucifera HOM05D000059 ORTHO05D000528 2.8e-09 65.9 79 51.9
ECA236G3100 Erigeron canadensis HOM05D000059 ORTHO05D000528 6.2e-09 64.7 73 49.3
Sc07g0006640 Simmondsia chinensis HOM05D000059 ORTHO05D000528 8.2e-09 64.3 72 52.8
HPP92_019729 Vanilla planifolia HOM05D000059 ORTHO05D000528 8.2e-09 64.3 80 46.2
Zm00001eb368360 Zea mays HOM05D000059 ORTHO05D000528 8.2e-09 64.3 78 50.0
Ah.12g058660 Amaranthus hybridus HOM05D000059 ORTHO05D000528 1.1e-08 63.9 79 49.4
Ah.02g115670 Amaranthus hybridus HOM05D000059 ORTHO05D000528 1.4e-08 63.5 78 50.0
Zm00001eb439810 Zea mays HOM05D000059 ORTHO05D000528 1.4e-08 63.5 84 46.4
vmacro20287 Vaccinium macrocarpon HOM05D000059 ORTHO05D000528 1.8e-08 63.2 76 48.7
Lalb_Chr01g0023041 Lupinus albus HOM05D000059 ORTHO05D000528 3.1e-08 62.4 72 48.6
Lalb_Chr19g0124591 Lupinus albus HOM05D000059 ORTHO05D000528 4.0e-08 62.0 73 49.3
PSO339G4778 Papaver somniferum HOM05D000059 ORTHO05D000528 5.3e-08 61.6 85 45.9
Peaxi162Scf00141g01427 Petunia axillaris HOM05D000059 ORTHO05D000528 1.2e-07 60.5 76 46.1
arahy.Tifrunner.gnm1.ann1.JS3QJH Arachis hypogaea HOM05D000059 ORTHO05D000528 1.5e-07 60.1 80 43.8
arahy.Tifrunner.gnm1.ann1.RD8T5J Arachis hypogaea HOM05D000059 ORTHO05D000528 1.5e-07 60.1 80 43.8
HanXRQChr15g0464081 Helianthus annuus HOM05D000059 ORTHO05D000528 2.6e-07 59.3 69 49.3
Os01g0832300 Oryza sativa ssp. japonica HOM05D000059 ORTHO05D000528 2.6e-07 59.3 94 41.5
Rhsim05G0216600 Rhododendron simsii HOM05D000059 ORTHO05D000528 2.6e-07 59.3 71 50.7
PSO384G3512 Papaver somniferum HOM05D000059 ORTHO05D000528 3.4e-07 58.9 87 47.1
Zm00001eb351760 Zea mays HOM05D000059 ORTHO05D000528 1.0e-06 57.4 85 43.5
Zm00001eb289970 Zea mays HOM05D000059 ORTHO05D000528 1.3e-06 57.0 83 43.4
AUR62030499 Chenopodium quinoa HOM05D000059 ORTHO05D000528 1.7e-06 56.6 76 46.1
AUR62030795 Chenopodium quinoa HOM05D000059 ORTHO05D000528 1.7e-06 56.6 76 46.1
AUR62044298 Chenopodium quinoa HOM05D000059 ORTHO05D000528 1.7e-06 56.6 76 46.1
Hund11001 Selenicereus undatus HOM05D000059 ORTHO05D000528 1.7e-06 56.6 75 45.3
Nitab4.5_0000119g0100 Nicotiana tabacum HOM05D000059 ORTHO05D000528 2.2e-06 56.2 72 44.4
Os05g0467000 Oryza sativa ssp. japonica HOM05D000059 ORTHO05D000528 2.2e-06 56.2 90 40.0
EL10Ac5g12555 Beta vulgaris HOM05D000059 ORTHO05D000528 3.8e-06 55.5 77 44.2


User provided reference genes

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