Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0081G026 Amborella trichopoda HOM05D005062 ORTHO05D006410 3.3e-237 824.7 432 100.0
TAR623G1543 Trochodendron aralioides HOM05D005062 ORTHO05D006410 5.6e-128 461.8 422 60.2
MD02G1255900 Malus domestica HOM05D005062 ORTHO05D006410 2.8e-127 459.5 371 63.6
Nn2g14130 Nelumbo nucifera HOM05D005062 ORTHO05D006410 3.1e-126 456.1 426 58.0
CiPaw.13G040200 Carya illinoinensis HOM05D005062 ORTHO05D006410 1.1e-123 447.6 390 63.1
Atru.chr12.1008 Acer truncatum HOM05D005062 ORTHO05D006410 5.4e-123 445.3 424 58.5
Cfa010314 Carpinus fangiana HOM05D005062 ORTHO05D006410 9.3e-123 444.5 402 60.9
Aqoxy2G01214 Aquilegia oxysepala HOM05D005062 ORTHO05D006410 1.7e-121 440.3 352 65.6
Dinv11848 Davidia involucrata HOM05D005062 ORTHO05D006410 2.3e-121 439.9 343 65.6
FvH4_7g05590 Fragaria vesca HOM05D005062 ORTHO05D006410 3.9e-121 439.1 351 65.8
FAN01G3081 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.9e-121 439.1 351 65.8
Eucgr.J00992 Eucalyptus grandis HOM05D005062 ORTHO05D006410 5.1e-121 438.7 435 57.5
Manes.10G058650 Manihot esculenta HOM05D005062 ORTHO05D006410 6.6e-121 438.3 343 65.6
Duzib106G1045 Durio zibethinus HOM05D005062 ORTHO05D006410 8.7e-121 438.0 347 64.8
PGR044G2170 Punica granatum HOM05D005062 ORTHO05D006410 8.7e-121 438.0 359 64.6
FAN10G1073 Fragaria x ananassa HOM05D005062 ORTHO05D006410 4.3e-120 435.6 351 65.5
RcHm_v2.0_Chr1g0332571 Rosa chinensis HOM05D005062 ORTHO05D006410 4.3e-120 435.6 335 67.2
CDE06G2329 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 1.3e-119 434.1 378 60.3
CAN.G54.5 Capsicum annuum HOM05D005062 ORTHO05D006410 1.6e-119 433.7 361 63.2
Solyc07g014740.3 Solanum lycopersicum HOM05D005062 ORTHO05D006410 8.1e-119 431.4 432 55.1
Gorai.008G099000 Gossypium raimondii HOM05D005062 ORTHO05D006410 1.4e-118 430.6 350 63.4
Sabra08G0014600 Salix brachista HOM05D005062 ORTHO05D006410 4.0e-118 429.1 381 59.8
CsaV3_2G034960 Cucumis sativus L. HOM05D005062 ORTHO05D006410 1.2e-117 427.6 410 57.8
Gohir.A12G092722 Gossypium hirsutum HOM05D005062 ORTHO05D006410 1.2e-117 427.6 350 62.6
FAN23G1954 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.6e-117 426.4 366 62.8
HanXRQChr08g0217771 Helianthus annuus HOM05D005062 ORTHO05D006410 3.4e-117 426.0 331 67.7
DCAR_006341 Daucus carota HOM05D005062 ORTHO05D006410 9.9e-117 424.5 344 62.2
Oeu026579.1 Olea europaea HOM05D005062 ORTHO05D006410 9.9e-117 424.5 441 54.9
GSVIVG01011284001 Vitis vinifera HOM05D005062 ORTHO05D006410 9.9e-117 424.5 374 62.6
CSS0050380 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 2.2e-116 423.3 338 64.5
Nitab4.5_0010225g0010 Nicotiana tabacum HOM05D005062 ORTHO05D006410 2.2e-116 423.3 408 57.1
Potri.008G021600 Populus trichocarpa HOM05D005062 ORTHO05D006410 2.2e-116 423.3 338 64.8
QL04p046667 Quercus lobata HOM05D005062 ORTHO05D006410 2.2e-116 423.3 452 53.3
THA.LOC104824209 Tarenaya hassleriana HOM05D005062 ORTHO05D006410 6.4e-116 421.8 352 61.1
FAN23G1474 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.4e-115 420.6 335 66.3
Cpa.g.sc183.10 Carica papaya HOM05D005062 ORTHO05D006410 5.4e-115 418.7 370 59.7
Lalb_Chr19g0129181 Lupinus albus HOM05D005062 ORTHO05D006410 5.4e-115 418.7 352 62.2
Glyma.10G111800 Glycine max HOM05D005062 ORTHO05D006410 2.7e-114 416.4 352 61.6
FAN06G1220 Fragaria x ananassa HOM05D005062 ORTHO05D006410 4.6e-114 415.6 336 65.5
Phvul.007G247700 Phaseolus vulgaris HOM05D005062 ORTHO05D006410 1.3e-113 414.1 344 63.1
Migut.F01613 Erythranthe guttata HOM05D005062 ORTHO05D006410 3.9e-113 412.5 390 59.7
Medtr1g050462 Medicago truncatula HOM05D005062 ORTHO05D006410 1.1e-112 411.0 352 61.6
Lsat_1_v5_gn_8_23960 Lactuca sativa HOM05D005062 ORTHO05D006410 1.5e-112 410.6 340 61.8
ECA233G2289 Erigeron canadensis HOM05D005062 ORTHO05D006410 4.3e-112 409.1 418 55.3
Lj5g0026270 Lotus japonicus HOM05D005062 ORTHO05D006410 7.4e-112 408.3 338 61.5
AUR62034504 Chenopodium quinoa HOM05D005062 ORTHO05D006410 1.3e-111 407.5 429 53.8
AT3G56160 Arabidopsis thaliana HOM05D005062 ORTHO05D006410 1.6e-111 407.1 356 61.8
MSTRG.8110 Avicennia marina HOM05D005062 ORTHO05D006410 2.8e-111 406.4 356 60.4
Sp5g06340 Schrenkiella parvula HOM05D005062 ORTHO05D006410 3.7e-111 406.0 371 59.6
arahy.Tifrunner.gnm1.ann1.ZAGE2X Arachis hypogaea HOM05D005062 ORTHO05D006410 6.2e-111 405.2 360 60.0
CSS0021342 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 6.2e-111 405.2 338 63.0
Ca_12731_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 6.2e-111 405.2 413 54.5
AL5G37480 Arabidopsis lyrata HOM05D005062 ORTHO05D006410 8.1e-111 404.8 338 63.0
arahy.Tifrunner.gnm1.ann1.BZ57JC Arachis hypogaea HOM05D005062 ORTHO05D006410 8.1e-111 404.8 355 60.8
BcaC07g39930 Brassica carinata HOM05D002435 ORTHO05D002550 1.4e-110 404.1 361 60.9
BolC8t50765H Brassica oleracea HOM05D002435 ORTHO05D002550 1.4e-110 404.1 361 60.9
Peaxi162Scf00235g10011 Petunia axillaris HOM05D005062 ORTHO05D006410 1.8e-110 403.7 346 61.6
BraA09t40366Z Brassica rapa HOM05D005062 ORTHO05D006410 9.0e-110 401.4 345 62.6
GSVIVG01036146001 Vitis vinifera HOM05D005062 ORTHO05D006410 1.2e-109 401.0 368 57.9
FAN23G2695 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.5e-109 400.6 411 56.0
A09p49130 Brassica napus HOM05D002435 ORTHO05D002550 3.4e-109 399.4 332 63.9
SalBow6G6867 Salvia bowleyana HOM05D005062 ORTHO05D006410 5.8e-109 398.7 344 60.8
Cc02_g09770 Coffea canephora HOM05D005062 ORTHO05D006410 1.0e-108 397.9 349 59.6
BcaB01g00026 Brassica carinata HOM05D002435 ORTHO05D002550 1.3e-108 397.5 332 64.2
C08p31440 Brassica napus HOM05D002435 ORTHO05D002550 2.9e-108 396.4 362 60.8
Os02g0531200 Oryza sativa ssp. japonica HOM05D005062 ORTHO05D006410 6.5e-108 395.2 340 60.0
Lsat_1_v5_gn_2_104621 Lactuca sativa HOM05D005062 ORTHO05D006410 3.2e-107 392.9 341 58.4
Eucgr.B03869 Eucalyptus grandis HOM05D005062 ORTHO05D006410 3.5e-106 389.4 341 59.2
ECA238G3155 Erigeron canadensis HOM05D005062 ORTHO05D006410 2.3e-105 386.7 369 55.8
Actinidia18593 Actinidia chinensis HOM05D000444 ORTHO05D000489 6.7e-105 385.2 407 54.5
CiPaw.14G101300 Carya illinoinensis HOM05D005062 ORTHO05D006410 1.5e-104 384.0 340 57.4
FAN03G1004 Fragaria x ananassa HOM05D005062 ORTHO05D006410 4.3e-104 382.5 397 55.9
HanXRQChr11g0342201 Helianthus annuus HOM05D005062 ORTHO05D006410 9.6e-104 381.3 333 57.4
Thhalv10006005m.g Eutrema salsugineum HOM05D005062 ORTHO05D006410 1.8e-102 377.1 357 60.8
HPP92_007815 Vanilla planifolia HOM05D005062 ORTHO05D006410 2.6e-101 373.2 378 54.5
Rhsim03G0099700 Rhododendron simsii HOM05D005062 ORTHO05D006410 4.5e-101 372.5 485 48.2
PGR102G2753 Punica granatum HOM05D005062 ORTHO05D006410 1.7e-100 370.5 335 58.8
HanXRQChr08g0217571 Helianthus annuus HOM05D005062 ORTHO05D006410 7.4e-96 355.1 347 53.0
Sc12g0004460 Simmondsia chinensis HOM05D005062 ORTHO05D006410 2.4e-94 350.1 355 52.1
TPR.G10638 Trifolium pratense HOM05D005062 ORTHO05D006410 2.6e-93 346.7 287 64.5
Ah.08g215800 Amaranthus hybridus HOM05D005062 ORTHO05D006410 2.2e-92 343.6 366 49.5
EL10As25g24233 Beta vulgaris HOM05D005062 ORTHO05D006410 8.5e-92 341.7 485 42.7
Sed0016949 Sechium edule HOM05D005062 ORTHO05D006410 3.2e-91 339.7 308 57.5
Sopen07g005620 Solanum pennellii HOM05D000002 ORTHO05D000001 7.2e-91 338.6 376 51.1
CiPaw.14G101100 Carya illinoinensis HOM05D005062 ORTHO05D006410 8.2e-87 325.1 369 50.1
Ah.09g232820 Amaranthus hybridus HOM05D005062 ORTHO05D006410 1.8e-86 323.9 388 50.0
Thecc.10G106400 Theobroma cacao HOM05D005062 ORTHO05D006410 9.1e-86 321.6 252 64.7
Gohir.D12G091480 Gossypium hirsutum HOM05D005062 ORTHO05D006410 2.7e-82 310.1 256 62.5
VMungo0720G3089 Vigna mungo HOM05D000444 ORTHO05D000489 8.8e-81 305.1 513 41.1
AUR62009772 Chenopodium quinoa HOM05D005062 ORTHO05D006410 7.0e-78 295.4 404 44.3
Hund06778 Selenicereus undatus HOM05D005062 ORTHO05D006410 6.5e-76 288.9 291 55.0
Zm00001eb242730 Zea mays HOM05D005062 ORTHO05D006410 6.3e-71 272.3 222 61.7
unitig_578.g16343 Utricularia gibba HOM05D005062 ORTHO05D006410 9.1e-70 268.5 338 47.3
Ciclev10032297m.g Citrus clementina HOM05D005062 ORTHO05D006410 1.6e-69 267.7 240 58.3
EL10Ac7g15813 Beta vulgaris HOM05D005062 ORTHO05D006410 1.1e-67 261.5 366 42.9
Prupe.2G079400 Prunus persica HOM05D005062 ORTHO05D006410 3.0e-65 253.4 231 59.3
Zm00001eb296300 Zea mays HOM05D005062 ORTHO05D006410 2.0e-64 250.8 209 60.8
CARHR166310 Cardamine hirsuta HOM05D005062 ORTHO05D006410 2.2e-63 247.3 227 60.8
SGA_v2.0_scaffold13G06459 Striga asiatica HOM05D005062 ORTHO05D006410 1.2e-61 241.5 401 40.4
Carub.0005s2291 Capsella rubella HOM05D005062 ORTHO05D006410 2.2e-60 237.3 203 63.5
MD02G1256100 Malus domestica HOM05D005062 ORTHO05D006410 8.5e-60 235.3 191 64.4
Sc20g0001180 Simmondsia chinensis HOM05D003607 ORTHO05D004049 4.2e-59 233.0 202 59.4
Mapoly0046s0115 Marchantia polymorpha HOM05D005062 ORTHO05D006410 3.6e-58 229.9 331 40.8
Lj3A928T57 Lonicera japonica HOM05D005062 ORTHO05D006410 2.0e-56 224.2 242 52.9
AUR62039218 Chenopodium quinoa HOM05D005062 ORTHO05D006410 2.2e-55 220.7 353 39.1
AagrBONN_evm.TU.Sc2ySwM_117.1142 Anthoceros agrestis HOM05D005062 ORTHO05D006410 2.8e-55 220.3 252 47.6
SMO347G0520 Selaginella moellendorffii HOM05D005062 ORTHO05D006410 1.4e-54 218.0 333 43.2
Haze_02484 Corylus avellana HOM05D005062 ORTHO05D006410 3.3e-51 206.8 232 54.7
Haze_23392 Corylus avellana HOM05D005062 ORTHO05D006410 4.0e-49 199.9 234 49.6
Pp3c3_30210 Physcomitrium patens HOM05D005062 ORTHO05D006410 3.4e-48 196.8 202 52.5
A02p12720 Brassica napus HOM05D005062 ORTHO05D006410 6.3e-47 192.6 237 54.0
MD02G1256200 Malus domestica HOM05D005062 ORTHO05D006410 1.7e-44 184.5 127 70.9
Duzib128G0173 Durio zibethinus HOM05D005062 ORTHO05D006410 1.1e-43 181.8 231 47.6
Cre09.g395700 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 1.5e-43 181.4 359 35.9
PRCOL_00003606 Prasinoderma coloniale HOM05D005062 ORTHO05D006410 3.6e-42 176.8 335 37.0
Psat6g129720 Pisum sativum HOM05D005062 ORTHO05D006410 2.3e-41 174.1 150 59.3
CBR_g48207 Chara braunii HOM05D000019 ORTHO05D000048 2.9e-39 167.2 204 45.1
QL01p012456 Quercus lobata HOM05D005062 ORTHO05D006410 1.7e-36 157.9 132 59.8
Haze_02485 Corylus avellana HOM05D005062 ORTHO05D006410 3.9e-36 156.8 197 46.2
MCO15G192 Micromonas commoda HOM05D005062 ORTHO05D006410 1.4e-33 148.3 296 31.4
Cre06.g250450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 1.3e-31 141.7 360 29.4
Cre09.g393250 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 1.3e-31 141.7 331 33.8
Cre12.g521950 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 2.9e-31 140.6 337 30.6
Cre02.g147450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 3.2e-30 137.1 380 32.1
Cfa010034 Carpinus fangiana HOM05D005062 ORTHO05D006410 2.7e-29 134.0 120 56.7
COL.COLO4_24555 Corchorus olitorius HOM05D005062 ORTHO05D006410 6.6e-28 129.4 101 67.3
QL01p012462 Quercus lobata HOM05D005062 ORTHO05D006410 1.5e-27 128.3 132 47.7
Ciclev10033893m.g Citrus clementina HOM05D005062 ORTHO05D006410 4.7e-26 123.2 96 63.5
FAN06G3794 Fragaria x ananassa HOM05D005062 ORTHO05D006410 4.0e-25 120.2 91 70.3
Lj3C928T13 Lonicera japonica HOM05D005062 ORTHO05D006410 8.9e-25 119.0 167 41.9
COL.COLO4_24556 Corchorus olitorius HOM05D005062 ORTHO05D006410 1.2e-24 118.6 83 67.5
FAN06G0036 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.9e-22 111.3 124 51.6
FAN01G2457 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.5e-21 107.1 81 71.6
SEGI_26426 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 6.0e-21 106.3 96 51.0
ClCG02G008710 Citrullus lanatus HOM05D005062 ORTHO05D006410 6.6e-20 102.8 144 41.7
Psat6g129760 Pisum sativum HOM05D005062 ORTHO05D006410 1.9e-19 101.3 149 39.6
Ca_00262_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 7.3e-19 99.4 147 42.2
Haze_23393 Corylus avellana HOM05D005062 ORTHO05D006410 8.1e-18 95.9 70 62.9
FvH4_7g05870 Fragaria vesca HOM05D005062 ORTHO05D006410 1.1e-17 95.5 117 48.7
GSVIVG01034679001 Vitis vinifera HOM05D005062 ORTHO05D006410 1.1e-17 95.5 67 79.1
BraA02t06329Z Brassica rapa HOM05D005062 ORTHO05D006410 3.1e-17 94.0 74 70.3
Hund18750 Selenicereus undatus HOM05D005062 ORTHO05D006410 6.4e-15 86.3 97 41.2
Dinv42565 Davidia involucrata HOM05D005062 ORTHO05D006410 1.1e-14 85.5 96 50.0
Hma1.2p1_0165F.1_g073310 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 2.4e-14 84.3 84 48.8
SEGI_01082 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 2.4e-14 84.3 60 78.3
Hma1.2p1_1068F.1_g253985 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 9.3e-14 82.4 58 63.8
RcHm_v2.0_Chr1g0332551 Rosa chinensis HOM05D005062 ORTHO05D006410 9.3e-14 82.4 59 66.1
FAN01G2288 Fragaria x ananassa HOM05D005062 ORTHO05D006410 4.6e-13 80.1 44 86.4
SEGI_13629 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 9.6e-11 72.4 58 60.3
MCO11G881 Micromonas commoda HOM05D005062 ORTHO05D028578 1.1e-09 68.9 362 26.0
RcHm_v2.0_Chr1g0332541 Rosa chinensis HOM05D005062 ORTHO05D006410 3.1e-09 67.4 62 53.2
CDE08G0076 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 7.6e-08 62.8 35 85.7
Ca_12794_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 1.3e-07 62.0 53 62.3
MELO3C034937.2 Cucumis melo HOM05D005062 ORTHO05D006410 9.3e-06 55.8 63 55.6


User provided reference genes

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