Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0078G008 Amborella trichopoda HOM05D006199 ORTHO05D006558 1.4e-229 799.3 406 100.0
MBI08_g14630_MAGBIO Magnolia biondii HOM05D006199 ORTHO05D006558 1.2e-116 424.1 408 54.4
TAR628G1195 Trochodendron aralioides HOM05D006199 ORTHO05D006558 4.6e-116 422.2 418 54.5
Nn5g30772 Nelumbo nucifera HOM05D006199 ORTHO05D006558 1.5e-114 417.2 415 55.2
CiPaw.05G081500 Carya illinoinensis HOM05D006199 ORTHO05D006558 1.2e-111 407.5 420 52.4
Sabra09G0104300 Salix brachista HOM05D006199 ORTHO05D006558 1.7e-110 403.7 417 52.8
Cfa005236 Carpinus fangiana HOM05D006199 ORTHO05D006558 5.0e-110 402.1 420 52.1
Lj5A179T83 Lonicera japonica HOM05D006199 ORTHO05D006558 5.0e-110 402.1 419 53.2
GSVIVG01024030001 Vitis vinifera HOM05D006199 ORTHO05D006558 1.9e-109 400.2 335 60.3
Potri.009G134500 Populus trichocarpa HOM05D006199 ORTHO05D006558 3.2e-109 399.4 417 53.0
Dinv41943 Davidia involucrata HOM05D006199 ORTHO05D006558 4.2e-109 399.1 338 58.6
Thecc.02G060900 Theobroma cacao HOM05D006199 ORTHO05D006558 1.2e-108 397.5 393 54.2
Aqoxy6G02177 Aquilegia oxysepala HOM05D006199 ORTHO05D006558 1.6e-108 397.1 412 53.6
TWI75G1548 Tripterygium wilfordii HOM05D006199 ORTHO05D006558 1.4e-107 394.0 419 52.7
QL11p050170 Quercus lobata HOM05D006199 ORTHO05D006558 3.9e-107 392.5 424 51.4
Rhsim11G0191800 Rhododendron simsii HOM05D006199 ORTHO05D006558 1.1e-104 384.4 419 50.8
MD10G1095100 Malus domestica HOM05D006199 ORTHO05D006558 1.4e-104 384.0 416 50.0
Gorai.002G197400 Gossypium raimondii HOM05D006199 ORTHO05D006558 3.1e-104 382.9 400 52.2
CANSAT25G2535 Cannabis sativa HOM05D006199 ORTHO05D006558 4.1e-104 382.5 419 50.4
Solyc01g111550.3 Solanum lycopersicum HOM05D006199 ORTHO05D006558 9.1e-104 381.3 423 51.1
Phvul.009G119500 Phaseolus vulgaris HOM05D006199 ORTHO05D006558 3.4e-103 379.4 417 51.6
Duzib132G0247 Durio zibethinus HOM05D006199 ORTHO05D006558 1.7e-102 377.1 392 52.8
Gohir.A01G168100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 1.7e-102 377.1 400 51.5
Sopen01g053590 Solanum pennellii HOM05D006199 ORTHO05D006558 1.7e-102 377.1 423 51.1
Sed0003263 Sechium edule HOM05D006199 ORTHO05D006558 2.2e-102 376.7 415 48.4
Nitab4.5_0005853g0010 Nicotiana tabacum HOM05D006199 ORTHO05D006558 5.5e-101 372.1 423 50.6
FvH4_2g01260 Fragaria vesca HOM05D006199 ORTHO05D006558 9.4e-101 371.3 422 47.6
VMungo1309G0102 Vigna mungo HOM05D006199 ORTHO05D006558 9.4e-101 371.3 421 51.1
CAN.G588.74 Capsicum annuum HOM05D006199 ORTHO05D006558 2.1e-100 370.2 422 50.2
ClCG02G011890 Citrullus lanatus HOM05D006199 ORTHO05D006558 7.9e-100 368.2 419 48.9
Eucgr.I01413 Eucalyptus grandis HOM05D006199 ORTHO05D006558 1.4e-99 367.5 416 49.8
PSO675G4200 Papaver somniferum HOM05D006199 ORTHO05D006558 1.8e-99 367.1 433 48.7
FAN20G1063 Fragaria x ananassa HOM05D006199 ORTHO05D006558 8.8e-99 364.8 422 47.6
EL10Ac9g21386 Beta vulgaris HOM05D006199 ORTHO05D006558 1.5e-98 364.0 414 48.6
Cc02_g16220 Coffea canephora HOM05D006199 ORTHO05D006558 4.4e-98 362.5 341 55.1
Glyma.04G003800 Glycine max HOM05D006199 ORTHO05D006558 5.7e-98 362.1 422 49.1
Nitab4.5_0006645g0060 Nicotiana tabacum HOM05D006199 ORTHO05D006558 1.3e-97 360.9 447 47.9
PSO541G4917 Papaver somniferum HOM05D006199 ORTHO05D006558 1.3e-97 360.9 432 48.1
Ah.01g022950 Amaranthus hybridus HOM05D006199 ORTHO05D006558 3.7e-97 359.4 419 47.7
RcHm_v2.0_Chr6g0251921 Rosa chinensis HOM05D006199 ORTHO05D006558 8.2e-97 358.2 422 47.4
PGR142G1980 Punica granatum HOM05D006199 ORTHO05D006558 1.1e-96 357.8 432 47.7
Lj1g0009253 Lotus japonicus HOM05D006199 ORTHO05D006558 4.1e-96 355.9 431 48.7
Manes.04G075600 Manihot esculenta HOM05D006199 ORTHO05D006558 5.3e-96 355.5 365 50.7
CsaV3_2G016060 Cucumis sativus L. HOM05D006199 ORTHO05D006558 9.1e-96 354.8 415 47.7
arahy.Tifrunner.gnm1.ann1.H9ZTXG Arachis hypogaea HOM05D006199 ORTHO05D006558 1.5e-95 354.0 419 50.1
Gohir.D01G159100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 1.0e-94 351.3 318 56.0
AUR62013038 Chenopodium quinoa HOM05D006199 ORTHO05D006558 1.3e-94 350.9 411 47.0
Haze_02147 Corylus avellana HOM05D006199 ORTHO05D006558 5.0e-94 349.0 475 44.6
MSTRG.19995 Avicennia marina HOM05D006199 ORTHO05D006558 6.5e-94 348.6 413 49.4
Peaxi162Scf00362g00651 Petunia axillaris HOM05D006199 ORTHO05D006558 3.2e-93 346.3 435 47.4
Ciclev10028644m.g Citrus clementina HOM05D006199 ORTHO05D006558 9.4e-93 344.7 420 47.9
FAN24G2717 Fragaria x ananassa HOM05D006199 ORTHO05D006558 9.4e-93 344.7 385 47.5
Migut.B00085 Erythranthe guttata HOM05D006199 ORTHO05D006558 1.6e-92 344.0 415 46.5
Medtr3g117880 Medicago truncatula HOM05D006199 ORTHO05D006558 3.6e-92 342.8 424 46.9
Prupe.8G164900 Prunus persica HOM05D006199 ORTHO05D006558 1.8e-91 340.5 418 47.4
Sc18g0006460 Simmondsia chinensis HOM05D006199 ORTHO05D006558 1.8e-91 340.5 364 48.6
PGSC0003DMG400006190 Solanum tuberosum HOM05D006199 ORTHO05D006558 5.2e-91 339.0 411 47.9
Actinidia00620 Actinidia chinensis HOM05D006199 ORTHO05D006558 6.7e-91 338.6 403 49.9
FAN27G0272 Fragaria x ananassa HOM05D006199 ORTHO05D006558 8.2e-89 331.6 409 45.7
SHI05731 Sapria himalayana HOM05D006199 ORTHO05D006558 1.8e-88 330.5 352 49.4
SalBow1G2578 Salvia bowleyana HOM05D006199 ORTHO05D006558 5.3e-88 328.9 419 44.9
MELO3C020815.2 Cucumis melo HOM05D006199 ORTHO05D006558 2.0e-87 327.0 464 42.0
AT2G20980 Arabidopsis thaliana HOM05D006199 ORTHO05D006558 4.5e-87 325.9 417 45.6
Thhalv10000193m.g Eutrema salsugineum HOM05D006199 ORTHO05D006558 4.5e-87 325.9 411 45.5
Atru.chr5.3311 Acer truncatum HOM05D006199 ORTHO05D006558 1.3e-86 324.3 371 49.6
Lsat_1_v5_gn_4_71580 Lactuca sativa HOM05D006199 ORTHO05D006558 1.3e-86 324.3 419 44.9
Carub.0004s0005 Capsella rubella HOM05D006199 ORTHO05D006558 2.9e-86 323.2 354 50.0
Ca_15302_v3 Cicer arietinum L. HOM05D006199 ORTHO05D006558 3.8e-86 322.8 366 48.4
Sp4g00170 Schrenkiella parvula HOM05D006199 ORTHO05D006558 3.2e-85 319.7 403 44.9
AL4G10110 Arabidopsis lyrata HOM05D006199 ORTHO05D006558 4.2e-85 319.3 343 49.6
THA.LOC104807811 Tarenaya hassleriana HOM05D006199 ORTHO05D006558 4.7e-84 315.8 409 45.5
TPR.G38477 Trifolium pratense HOM05D006199 ORTHO05D006558 1.4e-83 314.3 373 47.5
A03p27410 Brassica napus HOM05D006199 ORTHO05D006558 3.3e-82 309.7 410 44.9
HPP92_008341 Vanilla planifolia HOM05D006199 ORTHO05D006558 3.3e-82 309.7 413 46.5
Os09g0539400 Oryza sativa ssp. japonica HOM05D006199 ORTHO05D006558 4.4e-82 309.3 413 45.5
BcaC01g04861 Brassica carinata HOM05D006199 ORTHO05D006558 5.7e-82 308.9 410 44.9
C03p33040 Brassica napus HOM05D006199 ORTHO05D006558 9.7e-82 308.1 410 44.9
CiPaw.06G122500 Carya illinoinensis HOM05D006199 ORTHO05D006558 1.3e-81 307.8 346 48.6
BolC3t15631H Brassica oleracea HOM05D006199 ORTHO05D006558 1.7e-81 307.4 410 44.9
BraA03t11952Z Brassica rapa HOM05D006199 ORTHO05D006558 3.7e-81 306.2 410 44.6
Aa31LG7G15660 Aethionema arabicum HOM05D006199 ORTHO05D006558 4.8e-81 305.8 338 49.1
Lalb_Chr23g0265011 Lupinus albus HOM05D006199 ORTHO05D006558 1.4e-80 304.3 334 50.0
ECA234G0878 Erigeron canadensis HOM05D006199 ORTHO05D006558 7.0e-80 302.0 414 43.2
COL.COLO4_17328 Corchorus olitorius HOM05D006199 ORTHO05D006558 5.9e-79 298.9 399 45.9
CARHR111860 Cardamine hirsuta HOM05D006199 ORTHO05D006558 1.3e-78 297.7 378 44.7
DCAR_022808 Daucus carota HOM05D006199 ORTHO05D006558 1.3e-78 297.7 411 45.5
AUR62010046 Chenopodium quinoa HOM05D006199 ORTHO05D006558 1.5e-77 294.3 413 43.6
Hund00025 Selenicereus undatus HOM05D006199 ORTHO05D006558 1.9e-77 293.9 413 42.6
Zm00001eb331950 Zea mays HOM05D006199 ORTHO05D006558 5.5e-77 292.4 318 48.4
BcaB07g29803 Brassica carinata HOM05D006199 ORTHO05D006558 3.6e-76 289.7 417 43.2
HanXRQChr10g0300911 Helianthus annuus HOM05D006199 ORTHO05D006558 4.4e-74 282.7 416 43.0
arahy.Tifrunner.gnm1.ann1.WS10KT Arachis hypogaea HOM05D006199 ORTHO05D006558 3.7e-73 279.6 419 43.4
Oeu050364.1 Olea europaea HOM05D006199 ORTHO05D006558 4.8e-73 279.3 251 54.2
Cpa.g.sc37.143 Carica papaya HOM05D006199 ORTHO05D006558 4.7e-68 262.7 245 54.3
vmacro02274 Vaccinium macrocarpon HOM05D006199 ORTHO05D006558 7.0e-64 248.8 333 43.8
FAN11G3400 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.3e-62 244.6 221 51.1
Psat5g002720 Pisum sativum HOM05D006199 ORTHO05D006558 2.3e-62 243.8 429 39.2
Pp3c15_24300 Physcomitrium patens HOM05D006199 ORTHO05D006558 1.4e-59 234.6 397 37.0
CSS0017687 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 3.2e-56 223.4 191 57.1
FvH4_3g06660 Fragaria vesca HOM05D006199 ORTHO05D006558 2.3e-54 217.2 165 57.0
AagrBONN_evm.TU.Sc2ySwM_362.2501 Anthoceros agrestis HOM05D006199 ORTHO05D006558 6.6e-54 215.7 349 39.0
Mapoly0068s0001 Marchantia polymorpha HOM05D006199 ORTHO05D006558 2.0e-50 204.1 315 38.7
unitig_37.g12834 Utricularia gibba HOM05D006199 ORTHO05D006558 3.6e-44 183.3 317 37.5
FvH4_1g02330 Fragaria vesca HOM05D006199 ORTHO05D006558 1.1e-35 155.2 111 59.5
FAN14G5753 Fragaria x ananassa HOM05D006199 ORTHO05D006558 5.2e-35 152.9 108 61.1
FvH4_5g37420 Fragaria vesca HOM05D006199 ORTHO05D006558 1.3e-33 148.3 131 52.7
MCO03G518 Micromonas commoda HOM05D006199 ORTHO05D006558 3.5e-31 140.2 180 42.8
Actinidia20510 Actinidia chinensis HOM05D006199 ORTHO05D006558 6.2e-28 129.4 128 52.3
AUR62027127 Chenopodium quinoa HOM05D006199 ORTHO05D006558 4.0e-27 126.7 189 41.3
BcaB01g02961 Brassica carinata HOM05D006199 ORTHO05D006558 5.3e-27 126.3 198 41.9
CSS0031508 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 9.9e-26 122.1 177 44.6
FAN12G0591 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.3e-25 121.7 146 45.2
FAN06G5031 Fragaria x ananassa HOM05D006199 ORTHO05D006558 3.8e-25 120.2 129 47.3
SGA_v2.0_scaffold58G20372 Striga asiatica HOM05D006199 ORTHO05D006558 8.1e-20 102.4 157 42.7
FvH4_4g14930 Fragaria vesca HOM05D006199 ORTHO05D006558 2.4e-19 100.9 129 42.6
RcHm_v2.0_Chr5g0048301 Rosa chinensis HOM05D006199 ORTHO05D006558 5.8e-18 96.3 217 29.5
Cre07.g351400 Chlamydomonas reinhardtii HOM05D006199 ORTHO05D006558 4.9e-17 93.2 194 31.4
CBR_g870 Chara braunii HOM05D006199 ORTHO05D006558 1.1e-16 92.0 267 28.8
FAN24G0607 Fragaria x ananassa HOM05D006199 ORTHO05D006558 7.1e-16 89.4 65 58.5
FvH4_2g23470 Fragaria vesca HOM05D006199 ORTHO05D006558 2.1e-15 87.8 61 60.7
FAN14G4166 Fragaria x ananassa HOM05D006199 ORTHO05D006558 6.7e-14 82.8 61 59.0
FAN06G2201 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.9e-09 67.4 146 35.6
FvH4_7g17270 Fragaria vesca HOM05D006199 ORTHO05D006558 5.5e-08 63.2 81 42.0
CDE02G3657 Ceratophyllum demersum HOM05D006199 ORTHO05D006558 1.6e-07 61.6 99 45.5
Duzib248G0391 Durio zibethinus HOM05D006199 ORTHO05D006558 2.7e-07 60.8 48 58.3


User provided reference genes

Program Settings