Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 7.8e-62 240.4 127 100.0
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 8.4e-40 167.2 116 77.6
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 3.0e-37 158.7 125 71.2
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 8.7e-37 157.1 123 70.7
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 8.7e-37 157.1 111 76.6
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 1.5e-36 156.4 111 75.7
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 1.5e-36 156.4 111 76.6
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 3.3e-36 155.2 115 71.3
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 7.4e-36 154.1 124 70.2
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 9.6e-36 153.7 111 74.8
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 1.3e-35 153.3 111 74.8
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 1.3e-35 153.3 120 72.5
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 2.1e-35 152.5 111 72.1
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 2.8e-35 152.1 105 75.2
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 3.7e-35 151.8 111 72.1
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 4.8e-35 151.4 115 71.3
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 4.8e-35 151.4 115 71.3
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 8.1e-35 150.6 124 67.7
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 8.1e-35 150.6 111 73.9
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 8.1e-35 150.6 111 73.9
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 8.1e-35 150.6 110 74.5
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 1.1e-34 150.2 126 67.5
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 1.1e-34 150.2 111 72.1
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 1.4e-34 149.8 124 66.1
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 1.4e-34 149.8 124 67.7
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 1.4e-34 149.8 120 65.8
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 1.4e-34 149.8 125 68.8
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 1.4e-34 149.8 125 68.8
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 1.4e-34 149.8 121 67.8
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 1.8e-34 149.4 111 72.1
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 1.8e-34 149.4 111 73.0
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 1.8e-34 149.4 120 71.7
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 2.4e-34 149.1 126 66.7
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 2.4e-34 149.1 125 67.2
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 2.4e-34 149.1 111 71.2
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 2.4e-34 149.1 119 67.2
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 2.4e-34 149.1 101 77.2
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 2.4e-34 149.1 121 68.6
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 3.1e-34 148.7 126 66.7
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 3.1e-34 148.7 121 64.5
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 3.1e-34 148.7 125 67.2
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 3.1e-34 148.7 123 69.1
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 4.0e-34 148.3 121 66.9
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 4.0e-34 148.3 110 70.9
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 5.3e-34 147.9 123 67.5
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 5.3e-34 147.9 123 65.9
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 5.3e-34 147.9 123 67.5
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 6.9e-34 147.5 123 65.9
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 6.9e-34 147.5 123 65.9
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 6.9e-34 147.5 123 65.9
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 6.9e-34 147.5 111 73.0
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 6.9e-34 147.5 120 67.5
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 9.0e-34 147.1 120 65.0
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 1.2e-33 146.7 111 72.1
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 1.2e-33 146.7 104 75.0
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 1.2e-33 146.7 111 69.4
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 1.5e-33 146.4 111 70.3
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 1.5e-33 146.4 121 67.8
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 2.0e-33 146.0 110 71.8
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 2.0e-33 146.0 121 67.8
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 2.6e-33 145.6 104 72.1
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 3.4e-33 145.2 110 70.9
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 3.4e-33 145.2 111 70.3
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 3.4e-33 145.2 121 66.9
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 4.5e-33 144.8 101 73.3
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 4.5e-33 144.8 110 72.7
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 4.5e-33 144.8 114 69.3
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 5.8e-33 144.4 121 66.9
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 5.8e-33 144.4 111 70.3
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 7.6e-33 144.1 111 69.4
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 9.9e-33 143.7 121 62.8
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.3e-32 143.3 121 66.1
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 1.3e-32 143.3 111 68.5
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 1.7e-32 142.9 126 65.1
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 1.7e-32 142.9 121 66.9
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 1.7e-32 142.9 111 68.5
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.2e-32 142.5 101 72.3
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 2.9e-32 142.1 111 67.6
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 3.8e-32 141.7 120 66.7
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 3.8e-32 141.7 111 68.5
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 4.9e-32 141.4 125 65.6
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 4.9e-32 141.4 100 72.0
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 4.9e-32 141.4 100 72.0
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 4.9e-32 141.4 100 72.0
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 4.9e-32 141.4 100 72.0
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 4.9e-32 141.4 111 69.4
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 6.4e-32 141.0 104 72.1
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 1.1e-31 140.2 128 64.1
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 1.9e-31 139.4 100 71.0
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 2.4e-31 139.0 101 70.3
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 4.2e-31 138.3 126 61.1
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 5.5e-31 137.9 125 61.6
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 5.5e-31 137.9 114 66.7
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 5.5e-31 137.9 114 66.7
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 5.5e-31 137.9 126 63.5
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 7.1e-31 137.5 100 70.0
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 7.1e-31 137.5 128 62.5
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 1.6e-30 136.3 121 63.6
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 1.6e-30 136.3 121 63.6
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 2.1e-30 136.0 100 68.0
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 2.1e-30 136.0 126 62.7
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 2.7e-30 135.6 128 61.7
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 2.7e-30 135.6 122 62.3
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 3.5e-30 135.2 110 66.4
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 3.5e-30 135.2 121 63.6
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 4.6e-30 134.8 111 66.7
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 4.6e-30 134.8 124 60.5
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 6.0e-30 134.4 113 62.8
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 7.9e-30 134.0 101 68.3
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 1.8e-29 132.9 126 61.1
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 3.9e-29 131.7 125 60.8
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 6.7e-29 131.0 102 67.6
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 2.1e-27 125.9 98 65.3
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 1.1e-26 123.6 108 60.2
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 1.8e-26 122.9 120 57.5
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 2.4e-26 122.5 119 58.8
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 5.3e-26 121.3 106 66.0
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 1.5e-25 119.8 106 63.2
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 7.6e-25 117.5 109 61.5
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 1.0e-24 117.1 97 60.8
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 2.2e-24 115.9 95 66.3
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 8.4e-24 114.0 109 63.3
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 1.4e-23 113.2 96 64.6
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.9e-23 112.8 85 68.2
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 2.5e-23 112.5 103 57.3
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 1.8e-21 106.3 64 82.8
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 8.7e-21 104.0 79 73.4
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 1.5e-17 93.2 100 55.0
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 1.5e-17 93.2 100 55.0
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 2.6e-17 92.4 68 69.1
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 4.5e-17 91.7 89 59.6
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 7.6e-17 90.9 68 67.6
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 3.8e-16 88.6 68 66.2
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 5.0e-16 88.2 69 66.7
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 1.9e-15 86.3 69 62.3
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 7.2e-15 84.3 102 45.1
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 1.0e-13 80.5 73 56.2
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 1.1e-12 77.0 114 45.6
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 4.3e-12 75.1 85 54.1
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 4.3e-12 75.1 110 45.5
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 5.7e-12 74.7 74 56.8
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 2.8e-11 72.4 57 63.2
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 8.2e-11 70.9 73 56.2
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 1.8e-10 69.7 56 64.3
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 3.1e-10 68.9 115 40.0
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.3e-08 63.5 67 50.7
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 5.0e-08 61.6 82 48.8
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 1.4e-07 60.1 59 47.5
SGA_v2.0_scaffold13G06711 Striga asiatica HOM05D001997 ORTHO05D005560 4.2e-07 58.5 33 78.8


User provided reference genes

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