Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0075G015 Amborella trichopoda HOM05D021972 ORTHO05D001512 7.4e-62 240.4 120 100.0
ATR0075G027 Amborella trichopoda HOM05D021972 ORTHO05D001512 1.8e-39 166.0 143 62.9
vmacro13207 Vaccinium macrocarpon HOM05D001597 ORTHO05D001512 7.0e-12 74.3 136 37.5
Haze_08701 Corylus avellana HOM05D001597 ORTHO05D001512 3.5e-11 72.0 142 35.2
Rhsim07G0008200 Rhododendron simsii HOM05D001597 ORTHO05D001512 4.5e-11 71.6 132 35.6
Cfa012283 Carpinus fangiana HOM05D001597 ORTHO05D001512 7.7e-11 70.9 150 36.0
ATR0772G066 Amborella trichopoda HOM05D021972 ORTHO05D066556 2.3e-10 69.3 46 69.6
ATR0075G036 Amborella trichopoda HOM05D021972 ORTHO05D063490 2.9e-10 68.9 46 71.7
ClCG05G001010 Citrullus lanatus HOM05D001597 ORTHO05D001512 2.9e-10 68.9 136 33.1
Potri.014G093700 Populus trichocarpa HOM05D001597 ORTHO05D001512 2.9e-10 68.9 151 33.8
CSS0034741 Camellia sinensis var. sinensis HOM05D001597 ORTHO05D001512 5.0e-10 68.2 139 38.1
CDE02G3222 Ceratophyllum demersum HOM05D001597 ORTHO05D001512 5.0e-10 68.2 150 34.0
MELO3C006051.2 Cucumis melo HOM05D001597 ORTHO05D001512 5.0e-10 68.2 136 34.6
CsaV3_3G008330 Cucumis sativus L. HOM05D001597 ORTHO05D001512 5.0e-10 68.2 136 34.6
Manes.05G027100 Manihot esculenta HOM05D001597 ORTHO05D001512 5.0e-10 68.2 144 33.3
Nn7g37361 Nelumbo nucifera HOM05D001597 ORTHO05D001512 5.0e-10 68.2 154 33.1
Sabra14G0068400 Salix brachista HOM05D001597 ORTHO05D001512 6.6e-10 67.8 151 33.1
Dinv37562 Davidia involucrata HOM05D001597 ORTHO05D001512 1.1e-09 67.0 155 31.0
PSO135G0595 Papaver somniferum HOM05D001597 ORTHO05D001512 1.1e-09 67.0 167 32.3
PSO384G0773 Papaver somniferum HOM05D001597 ORTHO05D001512 1.1e-09 67.0 167 32.3
Sed0024631 Sechium edule HOM05D001597 ORTHO05D001512 1.1e-09 67.0 136 33.1
AUR62023512 Chenopodium quinoa HOM05D001597 ORTHO05D001512 1.5e-09 66.6 113 38.9
Dinv32543 Davidia involucrata HOM05D001597 ORTHO05D001512 1.5e-09 66.6 137 35.8
Potri.002G166700 Populus trichocarpa HOM05D001597 ORTHO05D001512 1.5e-09 66.6 146 33.6
CSS0008739 Camellia sinensis var. sinensis HOM05D001597 ORTHO05D001512 2.5e-09 65.9 137 36.5
CiPaw.11G126000 Carya illinoinensis HOM05D001597 ORTHO05D001512 2.5e-09 65.9 114 34.2
Lj3g0017380 Lotus japonicus HOM05D001597 ORTHO05D001512 2.5e-09 65.9 117 40.2
Ciclev10019570m.g Citrus clementina HOM05D001597 ORTHO05D001512 3.3e-09 65.5 153 35.3
TAR629G3319 Trochodendron aralioides HOM05D001597 ORTHO05D001512 3.3e-09 65.5 156 32.1
Actinidia28490 Actinidia chinensis HOM05D001597 ORTHO05D001512 4.2e-09 65.1 137 36.5
QL04p059786 Quercus lobata HOM05D001597 ORTHO05D001512 4.2e-09 65.1 158 31.0
TWI14G1198 Tripterygium wilfordii HOM05D001597 ORTHO05D001512 4.2e-09 65.1 141 34.0
GSVIVG01019465001 Vitis vinifera HOM05D001597 ORTHO05D001512 4.2e-09 65.1 158 31.6
Actinidia20186 Actinidia chinensis HOM05D001597 ORTHO05D001512 5.5e-09 64.7 135 34.1
Gohir.D08G044200 Gossypium hirsutum HOM05D001597 ORTHO05D001512 5.5e-09 64.7 151 33.8
VMungo0540G0345 Vigna mungo HOM05D001597 ORTHO05D001512 5.5e-09 64.7 154 33.8
Duzib133G0916 Durio zibethinus HOM05D001597 ORTHO05D001512 7.2e-09 64.3 147 33.3
ECA234G1805 Erigeron canadensis HOM05D001597 ORTHO05D001512 7.2e-09 64.3 140 30.7
Gohir.D11G098600 Gossypium hirsutum HOM05D001597 ORTHO05D001512 7.2e-09 64.3 145 33.8
Gorai.004G043000 Gossypium raimondii HOM05D001597 ORTHO05D001512 7.2e-09 64.3 151 33.8
Gorai.007G104800 Gossypium raimondii HOM05D001597 ORTHO05D001512 7.2e-09 64.3 145 33.8
THA.LOC104817329 Tarenaya hassleriana HOM05D001597 ORTHO05D001512 7.2e-09 64.3 138 32.6
Aqoxy5G04033 Aquilegia oxysepala HOM05D001597 ORTHO05D001512 9.5e-09 63.9 141 31.9
MBI06_g04294_MAGBIO Magnolia biondii HOM05D001597 ORTHO05D001512 9.5e-09 63.9 137 35.0
Hund16688 Selenicereus undatus HOM05D001597 ORTHO05D001512 9.5e-09 63.9 137 34.3
Sc23g0002400 Simmondsia chinensis HOM05D001597 ORTHO05D001512 9.5e-09 63.9 146 34.2
CiPaw.01G070500 Carya illinoinensis HOM05D001597 ORTHO05D001512 1.2e-08 63.5 114 34.2
Gohir.A08G033500 Gossypium hirsutum HOM05D001597 ORTHO05D001512 1.2e-08 63.5 157 33.1
Gorai.008G122900 Gossypium raimondii HOM05D001597 ORTHO05D001512 1.2e-08 63.5 145 33.8
Sabra02G0144900 Salix brachista HOM05D001597 ORTHO05D001512 1.2e-08 63.5 146 32.9
Sed0015020 Sechium edule HOM05D001597 ORTHO05D001512 1.2e-08 63.5 137 32.1
Hund27229 Selenicereus undatus HOM05D001597 ORTHO05D001512 1.2e-08 63.5 139 33.1
CANSAT56G1108 Cannabis sativa HOM05D001597 ORTHO05D001512 1.6e-08 63.2 147 35.4
Gohir.A12G110300 Gossypium hirsutum HOM05D001597 ORTHO05D001512 1.6e-08 63.2 145 33.8
Lj9C593G12 Lonicera japonica HOM05D001597 ORTHO05D001512 1.6e-08 63.2 137 35.8
Manes.02G013900 Manihot esculenta HOM05D001597 ORTHO05D001512 1.6e-08 63.2 149 30.9
Atru.chr5.607 Acer truncatum HOM05D001597 ORTHO05D001512 2.1e-08 62.8 148 30.4
Aa31LG1G27650 Aethionema arabicum HOM05D001597 ORTHO05D001512 2.1e-08 62.8 141 32.6
ECA236G2564 Erigeron canadensis HOM05D001597 ORTHO05D001512 2.1e-08 62.8 140 35.7
FvH4_7g15752 Fragaria vesca HOM05D001597 ORTHO05D001512 2.1e-08 62.8 137 32.1
FAN06G4080 Fragaria x ananassa HOM05D001597 ORTHO05D001512 2.1e-08 62.8 137 32.1
FAN06G5084 Fragaria x ananassa HOM05D001597 ORTHO05D001512 2.1e-08 62.8 137 32.1
FAN08G3603 Fragaria x ananassa HOM05D001597 ORTHO05D001512 2.1e-08 62.8 138 32.6
Lalb_Chr18g0044271 Lupinus albus HOM05D001597 ORTHO05D001512 2.1e-08 62.8 133 33.8
SMO367G0758 Selaginella moellendorffii HOM05D001597 ORTHO05D001512 2.1e-08 62.8 143 33.6
Solyc10g011790.3 Solanum lycopersicum HOM05D001597 ORTHO05D001512 2.1e-08 62.8 139 33.1
Sopen10g005580 Solanum pennellii HOM05D001597 ORTHO05D001512 2.1e-08 62.8 139 33.1
AT3G61600 Arabidopsis thaliana HOM05D001597 ORTHO05D001512 2.8e-08 62.4 141 32.6
CiPaw.02G037700 Carya illinoinensis HOM05D001597 ORTHO05D001512 2.8e-08 62.4 147 29.3
Migut.B01820 Erythranthe guttata HOM05D001597 ORTHO05D001512 2.8e-08 62.4 154 29.2
Gohir.A11G093600 Gossypium hirsutum HOM05D001597 ORTHO05D001512 2.8e-08 62.4 145 33.1
Hma1.2p1_0384F.1_g140903 Hydrangea macrophylla HOM05D001597 ORTHO05D001512 2.8e-08 62.4 137 32.8
Hma1.2p1_0384F.1_g140909 Hydrangea macrophylla HOM05D001597 ORTHO05D001512 2.8e-08 62.4 137 32.8
Lsat_1_v5_gn_7_1480 Lactuca sativa HOM05D001597 ORTHO05D001512 2.8e-08 62.4 139 33.8
TAR636G0707 Trochodendron aralioides HOM05D001597 ORTHO05D001512 2.8e-08 62.4 153 30.1
arahy.Tifrunner.gnm1.ann1.IT0YUR Arachis hypogaea HOM05D001597 ORTHO05D001512 3.6e-08 62.0 155 30.3
arahy.Tifrunner.gnm1.ann1.NHF99U Arachis hypogaea HOM05D001597 ORTHO05D001512 3.6e-08 62.0 155 30.3
FAN01G2625 Fragaria x ananassa HOM05D001597 ORTHO05D001512 3.6e-08 62.0 137 32.1
FAN10G2054 Fragaria x ananassa HOM05D001597 ORTHO05D001512 3.6e-08 62.0 137 32.1
MD01G1074300 Malus domestica HOM05D001597 ORTHO05D001512 3.6e-08 62.0 146 31.5
Nn1g01770 Nelumbo nucifera HOM05D001597 ORTHO05D001512 3.6e-08 62.0 154 30.5
VMungo0331G0273 Vigna mungo HOM05D001597 ORTHO05D001512 3.6e-08 62.0 153 33.3
A09p53670 Brassica napus HOM05D001597 ORTHO05D001512 4.7e-08 61.6 135 34.1
Carub.0005s2829 Capsella rubella HOM05D001597 ORTHO05D001512 4.7e-08 61.6 142 32.4
CDE08G1068 Ceratophyllum demersum HOM05D001597 ORTHO05D001512 4.7e-08 61.6 148 32.4
FAN03G3199 Fragaria x ananassa HOM05D001597 ORTHO05D001512 4.7e-08 61.6 137 32.1
FAN13G1401 Fragaria x ananassa HOM05D001597 ORTHO05D001512 4.7e-08 61.6 135 33.3
Manes.01G250200 Manihot esculenta HOM05D001597 ORTHO05D001512 4.7e-08 61.6 145 32.4
Os06g0507400 Oryza sativa ssp. japonica HOM05D001597 ORTHO05D001512 4.7e-08 61.6 141 31.9
Phvul.010G108100 Phaseolus vulgaris HOM05D001597 ORTHO05D001512 4.7e-08 61.6 144 34.0
RcHm_v2.0_Chr1g0358521 Rosa chinensis HOM05D001597 ORTHO05D001512 4.7e-08 61.6 137 32.1
DCAR_006958 Daucus carota HOM05D001597 ORTHO05D001512 6.1e-08 61.2 133 34.6
Thecc.01G349000 Theobroma cacao HOM05D001597 ORTHO05D001512 6.1e-08 61.2 145 33.8
Cpa.g.sc184.4 Carica papaya HOM05D001597 ORTHO05D001512 8.0e-08 60.8 153 32.7
Glyma.07G061000 Glycine max HOM05D001597 ORTHO05D001512 8.0e-08 60.8 153 33.3
Glyma.16G029600 Glycine max HOM05D001597 ORTHO05D001512 8.0e-08 60.8 151 33.1
HanXRQChr16g0523421 Helianthus annuus HOM05D001597 ORTHO05D001512 8.0e-08 60.8 103 35.0
TWI23G0118 Tripterygium wilfordii HOM05D001597 ORTHO05D001512 8.0e-08 60.8 137 32.8
AL5G43990 Arabidopsis lyrata HOM05D001597 ORTHO05D001512 1.0e-07 60.5 142 33.1
Duzib138G1084 Durio zibethinus HOM05D001597 ORTHO05D001512 1.0e-07 60.5 137 33.6
Thhalv10005840m.g Eutrema salsugineum HOM05D001597 ORTHO05D001512 1.0e-07 60.5 141 32.6
Gohir.D12G113300 Gossypium hirsutum HOM05D001597 ORTHO05D001512 1.0e-07 60.5 145 33.1
HanXRQChr06g0170511 Helianthus annuus HOM05D001597 ORTHO05D001512 1.0e-07 60.5 132 34.1
Lj3g0002237 Lotus japonicus HOM05D001597 ORTHO05D001512 1.0e-07 60.5 96 37.5
Lj3g0010844 Lotus japonicus HOM05D001597 ORTHO05D001512 1.0e-07 60.5 100 37.0
PGR031G2434 Punica granatum HOM05D001597 ORTHO05D001512 1.0e-07 60.5 135 31.9
CARHR171910 Cardamine hirsuta HOM05D001597 ORTHO05D001512 1.4e-07 60.1 152 32.2
Ca_09485_v3 Cicer arietinum L. HOM05D001597 ORTHO05D001512 1.4e-07 60.1 138 30.4
DCAR_027742 Daucus carota HOM05D001597 ORTHO05D001512 1.4e-07 60.1 116 33.6
FAN13G1206 Fragaria x ananassa HOM05D001597 ORTHO05D001512 1.4e-07 60.1 135 33.3
Lalb_Chr04g0261661 Lupinus albus HOM05D001597 ORTHO05D001512 1.4e-07 60.1 150 32.7
RcHm_v2.0_Chr7g0195841 Rosa chinensis HOM05D001597 ORTHO05D001512 1.4e-07 60.1 145 30.3
VMungo0331G0271 Vigna mungo HOM05D001597 ORTHO05D001512 1.4e-07 60.1 144 34.0
Glyma.03G254800 Glycine max HOM05D001597 ORTHO05D001512 1.8e-07 59.7 156 28.8
MD07G1143200 Malus domestica HOM05D001597 ORTHO05D001512 1.8e-07 59.7 146 31.5
Peaxi162Scf01012g00242 Petunia axillaris HOM05D001597 ORTHO05D001512 1.8e-07 59.7 140 30.7
FvH4_5g03751 Fragaria vesca HOM05D001597 ORTHO05D001512 2.3e-07 59.3 143 30.1
FAN18G3458 Fragaria x ananassa HOM05D001597 ORTHO05D001512 2.3e-07 59.3 143 30.1
Glyma.19G252500 Glycine max HOM05D001597 ORTHO05D001512 2.3e-07 59.3 153 31.4
Lj3g0011863 Lotus japonicus HOM05D001597 ORTHO05D001512 2.3e-07 59.3 96 36.5
Peaxi162Scf00585g01021 Petunia axillaris HOM05D001597 ORTHO05D001512 2.3e-07 59.3 145 29.7
Prupe.2G182300 Prunus persica HOM05D001597 ORTHO05D001512 2.3e-07 59.3 153 30.1
PGSC0003DMG400019403 Solanum tuberosum HOM05D001597 ORTHO05D001512 2.3e-07 59.3 146 31.5
Cc02_g38830 Coffea canephora HOM05D001597 ORTHO05D001512 3.0e-07 58.9 155 32.9
HanXRQChr04g0120601 Helianthus annuus HOM05D001597 ORTHO05D001512 3.0e-07 58.9 137 31.4
C03p30450 Brassica napus HOM05D001597 ORTHO05D001512 4.0e-07 58.5 129 34.1
BolC3t15393H Brassica oleracea HOM05D001597 ORTHO05D001512 4.0e-07 58.5 129 34.1
BraA09t40789Z Brassica rapa HOM05D001597 ORTHO05D001512 4.0e-07 58.5 142 31.7
Gohir.D11G023300 Gossypium hirsutum HOM05D001597 ORTHO05D001512 4.0e-07 58.5 157 30.6
Gorai.007G025100 Gossypium raimondii HOM05D001597 ORTHO05D001512 4.0e-07 58.5 157 30.6
Hma1.2p1_0216F.1_g091370 Hydrangea macrophylla HOM05D001597 ORTHO05D001512 4.0e-07 58.5 161 29.8
Lj3g0012829 Lotus japonicus HOM05D001597 ORTHO05D001512 4.0e-07 58.5 98 37.8
Lj3g0026639 Lotus japonicus HOM05D001597 ORTHO05D001512 4.0e-07 58.5 149 32.9
BcaC07g40665 Brassica carinata HOM05D001597 ORTHO05D001512 5.2e-07 58.2 145 29.7
CAN.G78.151 Capsicum annuum HOM05D001597 ORTHO05D001512 6.8e-07 57.8 137 31.4
Lj3g0019442 Lotus japonicus HOM05D001597 ORTHO05D001512 6.8e-07 57.8 100 33.0
Phvul.010G108200 Phaseolus vulgaris HOM05D001597 ORTHO05D001512 6.8e-07 57.8 153 32.7
Cfa003846 Carpinus fangiana HOM05D001597 ORTHO05D001512 8.9e-07 57.4 149 28.9
Eucgr.D02337 Eucalyptus grandis HOM05D001597 ORTHO05D001512 8.9e-07 57.4 136 32.4
Glyma.11G019400 Glycine max HOM05D001597 ORTHO05D001512 8.9e-07 57.4 121 33.9
Lj8C213G0 Lonicera japonica HOM05D001597 ORTHO05D001512 8.9e-07 57.4 152 29.6
TPR.G4735 Trifolium pratense HOM05D001597 ORTHO05D001512 8.9e-07 57.4 141 31.2
AUR62004436 Chenopodium quinoa HOM05D001597 ORTHO05D001512 1.2e-06 57.0 143 32.2
MBI07_g11384_MAGBIO Magnolia biondii HOM05D001597 ORTHO05D001512 1.2e-06 57.0 153 32.0
Aa31LG10G15400 Aethionema arabicum HOM05D001597 ORTHO05D001512 1.5e-06 56.6 156 31.4
Migut.N01571 Erythranthe guttata HOM05D001597 ORTHO05D001512 1.5e-06 56.6 162 30.9
Sopen01g039160 Solanum pennellii HOM05D001597 ORTHO05D001512 1.5e-06 56.6 145 29.7
SGA_v2.0_scaffold4G02264 Striga asiatica HOM05D001597 ORTHO05D001512 1.5e-06 56.6 162 29.0
BcaC07g40662 Brassica carinata HOM05D001597 ORTHO05D001512 2.0e-06 56.2 142 28.9
AUR62019786 Chenopodium quinoa HOM05D001597 ORTHO05D001512 2.0e-06 56.2 145 31.7
Haze_08702 Corylus avellana HOM05D001597 ORTHO05D001512 2.0e-06 56.2 99 37.4
Solyc01g095400.4 Solanum lycopersicum HOM05D001597 ORTHO05D001512 2.0e-06 56.2 145 29.0
PGSC0003DMG400000085 Solanum tuberosum HOM05D001597 ORTHO05D001512 2.0e-06 56.2 145 29.7
AT2G46260 Arabidopsis thaliana HOM05D001597 ORTHO05D001512 2.6e-06 55.8 156 31.4
C08p36450 Brassica napus HOM05D001597 ORTHO05D001512 2.6e-06 55.8 142 28.9
BolC8t51228H Brassica oleracea HOM05D001597 ORTHO05D001512 2.6e-06 55.8 142 28.9
Sp5g01810 Schrenkiella parvula HOM05D001597 ORTHO05D001512 2.6e-06 55.8 140 32.1
TWI59G1117 Tripterygium wilfordii HOM05D001597 ORTHO05D001512 2.6e-06 55.8 137 33.6
AL4G45540 Arabidopsis lyrata HOM05D001597 ORTHO05D001512 3.4e-06 55.5 156 31.4
Ciclev10019554m.g Citrus clementina HOM05D001597 ORTHO05D001512 3.4e-06 55.5 156 29.5
AUR62010791 Chenopodium quinoa HOM05D001597 ORTHO05D001512 4.4e-06 55.1 154 30.5
MD14G1117700 Malus domestica HOM05D001597 ORTHO05D001512 4.4e-06 55.1 138 29.7
Nitab4.5_0002564g0060 Nicotiana tabacum HOM05D001597 ORTHO05D001512 4.4e-06 55.1 166 31.3
Cfa009720 Carpinus fangiana HOM05D001597 ORTHO05D001512 7.5e-06 54.3 104 33.7
PGR031G2023 Punica granatum HOM05D001597 ORTHO05D001512 7.5e-06 54.3 156 30.8
SHI13129 Sapria himalayana HOM05D001597 ORTHO05D001512 7.5e-06 54.3 146 32.2
Sp4g28310 Schrenkiella parvula HOM05D001597 ORTHO05D001512 7.5e-06 54.3 154 30.5
GSVIVG01027032001 Vitis vinifera HOM05D001597 ORTHO05D001512 7.5e-06 54.3 46 54.3
Atru.chr9.2068 Acer truncatum HOM05D001597 ORTHO05D001512 9.8e-06 53.9 40 62.5
CARHR141530 Cardamine hirsuta HOM05D001597 ORTHO05D001512 9.8e-06 53.9 156 30.1


User provided reference genes

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