Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0073G006 Amborella trichopoda HOM05D003993 ORTHO05D005336 0.0e+00 2260.0 1130 100.0
TAR624G0674 Trochodendron aralioides HOM05D003993 ORTHO05D005336 0.0e+00 1380.2 1215 61.0
Nn1g03663 Nelumbo nucifera HOM05D003993 ORTHO05D005336 0.0e+00 1361.7 1015 68.8
Dinv22306 Davidia involucrata HOM05D003993 ORTHO05D005336 0.0e+00 1346.3 1214 59.3
PSO675G0751 Papaver somniferum HOM05D003993 ORTHO05D005336 0.0e+00 1314.3 1217 58.5
CSS0014856 Camellia sinensis var. sinensis HOM05D003993 ORTHO05D005336 0.0e+00 1311.2 1224 57.4
Cfa020417 Carpinus fangiana HOM05D003993 ORTHO05D005336 0.0e+00 1305.0 1215 57.7
PSO541G2178 Papaver somniferum HOM05D003993 ORTHO05D005336 0.0e+00 1302.0 1219 58.2
CANSAT11G1844 Cannabis sativa HOM05D003993 ORTHO05D005336 0.0e+00 1296.2 1215 57.6
Aqoxy4G02086 Aquilegia oxysepala HOM05D003993 ORTHO05D005336 0.0e+00 1294.6 1213 58.0
QL08p013350 Quercus lobata HOM05D003993 ORTHO05D005336 0.0e+00 1289.2 1217 57.9
Actinidia09963 Actinidia chinensis HOM05D003993 ORTHO05D005336 0.0e+00 1288.1 1225 57.8
Gorai.002G082300 Gossypium raimondii HOM05D003993 ORTHO05D005336 0.0e+00 1284.2 1019 65.1
Prupe.4G202100 Prunus persica HOM05D003993 ORTHO05D005336 0.0e+00 1282.3 1215 57.4
CiPaw.11G183500 Carya illinoinensis HOM05D003993 ORTHO05D005336 0.0e+00 1281.5 1186 57.6
Gohir.A01G074400 Gossypium hirsutum HOM05D003993 ORTHO05D005336 0.0e+00 1280.8 1211 57.7
Gohir.D01G060900 Gossypium hirsutum HOM05D003993 ORTHO05D005336 0.0e+00 1279.6 1020 64.8
TWI38G0109 Tripterygium wilfordii HOM05D003993 ORTHO05D005336 0.0e+00 1279.2 1023 64.3
MD11G1227200 Malus domestica HOM05D003993 ORTHO05D005336 0.0e+00 1278.5 1016 64.6
Thecc.07G054200 Theobroma cacao HOM05D003993 ORTHO05D005336 0.0e+00 1275.4 1205 57.8
Potri.011G132800 Populus trichocarpa HOM05D003993 ORTHO05D005336 0.0e+00 1270.8 1017 64.4
CSS0003157 Camellia sinensis var. sinensis HOM05D003993 ORTHO05D005336 0.0e+00 1269.6 1159 58.3
Sabra11G0119600 Salix brachista HOM05D003993 ORTHO05D005336 0.0e+00 1268.4 1019 64.4
MD03G1211800 Malus domestica HOM05D003993 ORTHO05D005336 0.0e+00 1267.3 1215 56.6
TAR626G1606 Trochodendron aralioides HOM05D003993 ORTHO05D005336 0.0e+00 1265.0 1216 57.3
TWI39G1096 Tripterygium wilfordii HOM05D003993 ORTHO05D005336 0.0e+00 1262.7 1214 56.3
Potri.001G417200 Populus trichocarpa HOM05D003993 ORTHO05D005336 0.0e+00 1259.2 1018 64.2
Manes.15G076600 Manihot esculenta HOM05D003993 ORTHO05D005336 0.0e+00 1258.0 1024 64.3
Lj3g0021702 Lotus japonicus HOM05D003993 ORTHO05D005336 0.0e+00 1256.9 1215 55.7
Haze_09608 Corylus avellana HOM05D003993 ORTHO05D005336 0.0e+00 1254.2 1019 63.4
Duzib170G0292 Durio zibethinus HOM05D003993 ORTHO05D005336 0.0e+00 1253.0 1270 55.0
Migut.H01858 Erythranthe guttata HOM05D003993 ORTHO05D005336 0.0e+00 1241.1 1023 62.4
RcHm_v2.0_Chr5g0037331 Rosa chinensis HOM05D003993 ORTHO05D005336 0.0e+00 1240.3 1219 56.1
MELO3C025431.2 Cucumis melo HOM05D003993 ORTHO05D005336 0.0e+00 1238.0 1216 55.2
Ciclev10007272m.g Citrus clementina HOM05D003993 ORTHO05D005336 0.0e+00 1237.6 1186 56.4
Cc05_g13220 Coffea canephora HOM05D003993 ORTHO05D005336 0.0e+00 1236.5 1214 55.4
ClCG10G005790 Citrullus lanatus HOM05D003993 ORTHO05D005336 0.0e+00 1235.7 1186 56.2
CsaV3_3G005470 Cucumis sativus L. HOM05D003993 ORTHO05D005336 0.0e+00 1235.3 1217 55.1
Lalb_Chr19g0134741 Lupinus albus HOM05D003993 ORTHO05D005336 0.0e+00 1234.6 1022 62.2
FvH4_3g21780 Fragaria vesca HOM05D003993 ORTHO05D005336 0.0e+00 1234.2 1210 55.8
Eucgr.F03424 Eucalyptus grandis HOM05D003993 ORTHO05D005336 0.0e+00 1232.2 1023 61.6
FAN25G1663 Fragaria x ananassa HOM05D003993 ORTHO05D005336 0.0e+00 1231.9 1223 55.1
Glyma.12G135700 Glycine max HOM05D003993 ORTHO05D005336 0.0e+00 1231.5 1024 62.3
MBI18_g30688_MAGBIO Magnolia biondii HOM05D003993 ORTHO05D005336 0.0e+00 1228.4 1103 59.0
Sed0012816 Sechium edule HOM05D003993 ORTHO05D005336 0.0e+00 1228.4 1191 56.1
Ca_01754_v3 Cicer arietinum L. HOM05D003993 ORTHO05D005336 0.0e+00 1226.5 1184 55.5
FAN16G1112 Fragaria x ananassa HOM05D003993 ORTHO05D005336 0.0e+00 1224.5 1234 54.5
THA.LOC104817894 Tarenaya hassleriana HOM05D003993 ORTHO05D005336 0.0e+00 1223.4 1007 63.3
GSVIVG01014604001 Vitis vinifera HOM05D003993 ORTHO05D005336 0.0e+00 1222.6 1205 56.2
A01p34110 Brassica napus HOM05D003993 ORTHO05D005336 0.0e+00 1218.8 1014 61.8
HPP92_011131 Vanilla planifolia HOM05D003993 ORTHO05D005336 0.0e+00 1218.8 1220 54.3
Atru.chr2.3206 Acer truncatum HOM05D003993 ORTHO05D005336 0.0e+00 1216.1 1023 62.8
BcaB04g20636 Brassica carinata HOM05D003993 ORTHO05D005336 0.0e+00 1216.1 1015 61.8
CARHR096540 Cardamine hirsuta HOM05D003993 ORTHO05D005336 0.0e+00 1216.1 1006 62.2
BraA01t03515Z Brassica rapa HOM05D003993 ORTHO05D005336 0.0e+00 1214.1 1014 61.4
Lj8C165T11 Lonicera japonica HOM05D003993 ORTHO05D005336 0.0e+00 1213.7 1254 54.1
HanXRQChr11g0332991 Helianthus annuus HOM05D003993 ORTHO05D005336 0.0e+00 1213.4 1004 62.6
C01p43520 Brassica napus HOM05D003993 ORTHO05D005336 0.0e+00 1213.0 1015 61.7
Phvul.005G091400 Phaseolus vulgaris HOM05D003993 ORTHO05D005336 0.0e+00 1212.6 1020 61.6
AT3G20720 Arabidopsis thaliana HOM05D003993 ORTHO05D005336 0.0e+00 1212.2 1016 61.7
BolC1t04312H Brassica oleracea HOM05D003993 ORTHO05D005336 0.0e+00 1211.8 1015 61.7
Sp3g18740 Schrenkiella parvula HOM05D003993 ORTHO05D005336 0.0e+00 1211.8 1006 62.1
arahy.Tifrunner.gnm1.ann1.YETR49 Arachis hypogaea HOM05D003993 ORTHO05D005336 0.0e+00 1211.1 1018 62.0
FAN11G2565 Fragaria x ananassa HOM05D003993 ORTHO05D005336 0.0e+00 1211.1 1224 54.5
Gorai.009G427300 Gossypium raimondii HOM05D003993 ORTHO05D005336 0.0e+00 1211.1 1025 61.4
SEGI_25073 Sequoiadendron giganteum HOM05D003993 ORTHO05D005336 0.0e+00 1211.1 1102 57.8
BcaC09g49013 Brassica carinata HOM05D003993 ORTHO05D005336 0.0e+00 1210.7 1014 61.9
Carub.0003s2068 Capsella rubella HOM05D003993 ORTHO05D005336 0.0e+00 1209.9 1020 61.5
Glyma.13G287100 Glycine max HOM05D003993 ORTHO05D005336 0.0e+00 1207.6 1028 61.5
Glyma.12G214500 Glycine max HOM05D003993 ORTHO05D005336 0.0e+00 1207.2 1027 61.1
Psat5g251760 Pisum sativum HOM05D003993 ORTHO05D005336 0.0e+00 1206.4 1022 60.9
Gohir.D05G365000 Gossypium hirsutum HOM05D003993 ORTHO05D005336 0.0e+00 1205.3 1021 61.0
Lalb_Chr14g0366101 Lupinus albus HOM05D003993 ORTHO05D005336 0.0e+00 1203.7 1017 61.3
VMungo1080G1710 Vigna mungo HOM05D003993 ORTHO05D005336 0.0e+00 1202.6 1045 60.6
arahy.Tifrunner.gnm1.ann1.M0TH05 Arachis hypogaea HOM05D003993 ORTHO05D005336 0.0e+00 1201.0 1024 60.2
Oeu032440.1 Olea europaea HOM05D003993 ORTHO05D005336 0.0e+00 1200.7 1224 53.7
arahy.Tifrunner.gnm1.ann1.C7DQ5B Arachis hypogaea HOM05D003993 ORTHO05D005336 0.0e+00 1198.3 1165 56.1
Sopen07g032220 Solanum pennellii HOM05D003993 ORTHO05D005336 0.0e+00 1198.0 1219 54.8
EL10Ac4g07982 Beta vulgaris HOM05D003993 ORTHO05D005336 0.0e+00 1196.0 1093 58.0
Medtr2g082910 Medicago truncatula HOM05D003993 ORTHO05D005336 0.0e+00 1195.6 1174 54.2
Lj3g0011163 Lotus japonicus HOM05D003993 ORTHO05D005336 0.0e+00 1194.5 1217 53.7
AL3G34640 Arabidopsis lyrata HOM05D003993 ORTHO05D005336 0.0e+00 1194.1 1016 61.5
PGR031G1242 Punica granatum HOM05D003993 ORTHO05D005336 0.0e+00 1192.2 1186 54.6
ECA236G0263 Erigeron canadensis HOM05D003993 ORTHO05D005336 0.0e+00 1186.8 1020 60.4
Os04g0628600 Oryza sativa ssp. japonica HOM05D003993 ORTHO05D005336 0.0e+00 1180.6 1044 60.2
Psat7g122440 Pisum sativum HOM05D003993 ORTHO05D005336 0.0e+00 1178.7 1025 59.7
AUR62015640 Chenopodium quinoa HOM05D003993 ORTHO05D005336 0.0e+00 1172.5 1105 56.7
Solyc07g064080.4 Solanum lycopersicum HOM05D003993 ORTHO05D005336 0.0e+00 1170.6 1217 54.0
Lsat_1_v5_gn_7_108360 Lactuca sativa HOM05D003993 ORTHO05D005336 0.0e+00 1165.6 1007 60.1
SalBow7G3755 Salvia bowleyana HOM05D003993 ORTHO05D005336 0.0e+00 1162.9 1060 57.8
Nitab4.5_0000397g0110 Nicotiana tabacum HOM05D003993 ORTHO05D005336 0.0e+00 1159.4 1264 51.9
DCAR_010016 Daucus carota HOM05D003993 ORTHO05D005336 0.0e+00 1152.5 1024 59.4
COL.COLO4_09564 Corchorus olitorius HOM05D003993 ORTHO05D005336 0.0e+00 1149.4 1215 53.5
vmacro11768 Vaccinium macrocarpon HOM05D003993 ORTHO05D005336 0.0e+00 1141.7 1014 60.1
Thhalv10019934m.g Eutrema salsugineum HOM05D003993 ORTHO05D005336 0.0e+00 1140.9 1009 59.6
Cpa.g.sc97.71 Carica papaya HOM05D003993 ORTHO05D005336 0.0e+00 1137.5 1216 53.0
Nitab4.5_0009192g0040 Nicotiana tabacum HOM05D003993 ORTHO05D005336 0.0e+00 1133.6 1185 53.4
Peaxi162Scf01086g00149 Petunia axillaris HOM05D003993 ORTHO05D005336 0.0e+00 1125.2 1220 52.3
CAN.G337.149 Capsicum annuum HOM05D003993 ORTHO05D005336 0.0e+00 1108.6 1190 53.0
Aa31LG8G7470 Aethionema arabicum HOM05D003993 ORTHO05D005336 0.0e+00 1106.7 1091 55.8
Gohir.A04G022400 Gossypium hirsutum HOM05D003993 ORTHO05D005336 0.0e+00 1094.7 1004 57.4
Sc16g0006470 Simmondsia chinensis HOM05D003993 ORTHO05D005336 0.0e+00 1082.0 933 60.6
Phvul.011G140701 Phaseolus vulgaris HOM05D003993 ORTHO05D005336 2.6e-310 1068.9 928 58.6
Ah.06g183050 Amaranthus hybridus HOM05D003993 ORTHO05D005336 1.0e-309 1067.0 1055 55.3
Medtr4g081300 Medicago truncatula HOM05D003993 ORTHO05D005336 8.4e-309 1063.9 935 58.7
SGA_v2.0_scaffold320G48573 Striga asiatica HOM05D003993 ORTHO05D005336 3.2e-300 1035.4 1006 55.0
arahy.Tifrunner.gnm1.ann1.D8T6NU Arachis hypogaea HOM05D003993 ORTHO05D005336 2.3e-298 1029.2 914 58.5
Mapoly0007s0002 Marchantia polymorpha HOM05D003993 ORTHO05D005336 8.5e-293 1010.7 1114 49.4
TPR.G36724 Trifolium pratense HOM05D003993 ORTHO05D005336 9.1e-287 990.7 1022 52.9
Pp3c10_1850 Physcomitrium patens HOM05D003993 ORTHO05D005336 5.0e-285 984.9 1184 46.9
SMO143G0035 Selaginella moellendorffii HOM05D003993 ORTHO05D005336 6.5e-285 984.6 1006 52.8
ECA246G2094 Erigeron canadensis HOM05D003993 ORTHO05D005336 3.2e-284 982.2 1164 47.3
AagrBONN_evm.TU.Sc2ySwM_344.1679 Anthoceros agrestis HOM05D003993 ORTHO05D005336 4.1e-279 965.3 1028 50.8
Duzib213G0987 Durio zibethinus HOM05D003993 ORTHO05D005336 1.4e-274 950.3 1217 46.8
arahy.Tifrunner.gnm1.ann1.P0I1SB Arachis hypogaea HOM05D003993 ORTHO05D005336 1.2e-270 937.2 826 58.7
FAN21G3569 Fragaria x ananassa HOM05D003993 ORTHO05D005336 3.6e-251 872.5 664 66.3
unitig_26.g9969 Utricularia gibba HOM05D003993 ORTHO05D005336 3.4e-217 759.6 1088 43.8
Pp3c15_5100 Physcomitrium patens HOM05D003993 ORTHO05D005336 3.5e-198 696.4 1194 36.5
Lsat_1_v5_gn_5_5700 Lactuca sativa HOM05D003993 ORTHO05D005336 3.7e-195 686.4 853 45.3
CBR_g39891 Chara braunii HOM05D003993 ORTHO05D005336 1.3e-189 667.9 1153 36.3
Zm00001eb431410 Zea mays HOM05D003993 ORTHO05D005336 6.1e-166 589.3 655 50.1
AUR62020558 Chenopodium quinoa HOM05D003993 ORTHO05D005336 1.0e-165 588.6 650 50.3
HanXRQChr08g0234101 Helianthus annuus HOM05D003993 ORTHO05D005336 2.8e-163 580.5 454 64.5
VMungo1127G1901 Vigna mungo HOM05D003993 ORTHO05D005336 1.2e-161 575.1 567 53.1
Nn1g06997 Nelumbo nucifera HOM05D003993 ORTHO05D005336 3.8e-160 570.1 403 72.0
SHI31871 Sapria himalayana HOM05D003993 ORTHO05D005336 1.9e-151 541.2 680 44.3
A05p28100 Brassica napus HOM05D003993 ORTHO05D005336 2.5e-135 487.6 768 41.5
BraA05t21692Z Brassica rapa HOM05D003993 ORTHO05D005336 8.9e-133 479.2 778 40.7
FAN21G2881 Fragaria x ananassa HOM05D003993 ORTHO05D005336 6.6e-112 409.8 598 43.6
Hund02134 Selenicereus undatus HOM05D003993 ORTHO05D005336 1.0e-96 359.4 408 49.3
QL04p049176 Quercus lobata HOM05D003993 ORTHO05D005336 3.2e-90 337.8 201 83.1
QL05p071299 Quercus lobata HOM05D003993 ORTHO05D005336 1.4e-82 312.4 181 84.5
Hund02131 Selenicereus undatus HOM05D003993 ORTHO05D005336 1.4e-82 312.4 450 44.2
VMungo1127G0362 Vigna mungo HOM05D003993 ORTHO05D005336 3.5e-81 307.8 272 57.7
arahy.Tifrunner.gnm1.ann1.9VYU83 Arachis hypogaea HOM05D003993 ORTHO05D005336 1.4e-74 285.8 422 44.5
BcaC05g28293 Brassica carinata HOM05D003993 ORTHO05D005336 7.2e-74 283.5 312 54.5
PGSC0003DMG401019261 Solanum tuberosum HOM05D003993 ORTHO05D005336 2.2e-67 261.9 304 52.0
arahy.Tifrunner.gnm1.ann1.R5QT9H Arachis hypogaea HOM05D003993 ORTHO05D005336 2.1e-57 228.8 714 29.6
QL11p046973 Quercus lobata HOM05D003993 ORTHO05D005336 7.9e-57 226.9 132 84.1
C05p43510 Brassica napus HOM05D003993 ORTHO05D005336 5.9e-52 210.7 289 46.4
BolC5t33074H Brassica oleracea HOM05D003993 ORTHO05D005336 1.6e-49 202.6 321 42.1
SHI31872 Sapria himalayana HOM05D003993 ORTHO05D005336 1.4e-48 199.5 173 60.7
BcaB06g26142 Brassica carinata HOM05D003993 ORTHO05D005336 7.0e-45 187.2 288 39.6
HanXRQChr17g0562031 Helianthus annuus HOM05D003993 ORTHO05D005336 1.0e-43 183.3 152 63.8
CDE05G2526 Ceratophyllum demersum HOM05D003993 ORTHO05D005336 9.1e-37 160.2 98 82.7
arahy.Tifrunner.gnm1.ann1.UE9C9H Arachis hypogaea HOM05D003993 ORTHO05D005336 1.6e-33 149.4 162 51.9
SHI50190 Sapria himalayana HOM05D003993 ORTHO05D005336 2.1e-33 149.1 132 62.1
Rhsim07G0149200 Rhododendron simsii HOM05D003993 ORTHO05D005336 5.0e-27 127.9 109 57.8
MBI18_g40553_MAGBIO Magnolia biondii HOM05D003993 ORTHO05D005336 7.5e-23 114.0 68 80.9
BcaB06g26141 Brassica carinata HOM05D003993 ORTHO05D005336 9.8e-23 113.6 131 48.1
VMungo1127G0084 Vigna mungo HOM05D003993 ORTHO05D005336 1.8e-21 109.4 68 76.5
Lsat_1_v5_gn_4_127040 Lactuca sativa HOM05D003993 ORTHO05D002051 1.1e-18 100.1 154 40.9
arahy.Tifrunner.gnm1.ann1.8I3UM6 Arachis hypogaea HOM05D003993 ORTHO05D005336 3.1e-16 92.0 91 48.4
arahy.Tifrunner.gnm1.ann1.43HIPW Arachis hypogaea HOM05D003993 ORTHO05D005336 1.9e-13 82.8 53 73.6
Os06g0731950 Oryza sativa ssp. japonica HOM05D003993 ORTHO05D005336 9.2e-13 80.5 79 49.4
Rhsim07G0135200 Rhododendron simsii HOM05D000810 ORTHO05D001064 1.3e-11 76.6 67 56.7
arahy.Tifrunner.gnm1.ann1.BQ4HID Arachis hypogaea HOM05D003993 ORTHO05D005336 1.7e-11 76.3 100 42.0
Lsat_1_v5_gn_4_137320 Lactuca sativa HOM05D000154 ORTHO05D000092 6.6e-11 74.3 53 64.2
BcaC05g28290 Brassica carinata HOM05D003993 ORTHO05D005336 2.1e-09 69.3 77 45.5
BolC5t33071H Brassica oleracea HOM05D000001 ORTHO05D000003 8.9e-08 63.9 103 35.0
C05p43480 Brassica napus HOM05D000001 ORTHO05D000003 6.4e-06 57.8 63 46.0


User provided reference genes

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