Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0069G041 Amborella trichopoda HOM05D003411 ORTHO05D003914 9.8e-103 376.7 178 100.0
ATR0602G172 Amborella trichopoda HOM05D003411 ORTHO05D003914 1.8e-32 143.3 68 92.6
Gohir.A02G018500 Gossypium hirsutum HOM05D003411 ORTHO05D003914 1.4e-29 133.7 68 80.9
AT3G23800 Arabidopsis thaliana HOM05D003411 ORTHO05D003914 1.9e-29 133.3 68 83.8
Carub.0003s2410 Capsella rubella HOM05D003411 ORTHO05D003914 1.9e-29 133.3 68 83.8
Gohir.D02G021800 Gossypium hirsutum HOM05D003411 ORTHO05D003914 1.9e-29 133.3 68 80.9
BcaB06g26541 Brassica carinata HOM05D003411 ORTHO05D003914 2.5e-29 132.9 68 82.4
ECA233G4116 Erigeron canadensis HOM05D003411 ORTHO05D003914 2.5e-29 132.9 68 80.9
BcaC06g35570 Brassica carinata HOM05D003411 ORTHO05D003914 3.2e-29 132.5 68 82.4
C07p13410 Brassica napus HOM05D003411 ORTHO05D003914 3.2e-29 132.5 68 82.4
BolC7t41836H Brassica oleracea HOM05D003411 ORTHO05D003914 3.2e-29 132.5 68 82.4
BraA07t28648Z Brassica rapa HOM05D003411 ORTHO05D003914 3.2e-29 132.5 68 82.4
CARHR099780 Cardamine hirsuta HOM05D003411 ORTHO05D003914 4.2e-29 132.1 68 82.4
Thhalv10002510m.g Eutrema salsugineum HOM05D003411 ORTHO05D003914 5.5e-29 131.7 68 82.4
HanXRQChr02g0058461 Helianthus annuus HOM05D003411 ORTHO05D003914 5.5e-29 131.7 68 82.4
A07p08590 Brassica napus HOM05D003411 ORTHO05D003914 7.2e-29 131.3 68 82.4
HanXRQChr07g0185571 Helianthus annuus HOM05D003411 ORTHO05D003914 9.3e-29 131.0 68 80.9
CANSAT78G0444 Cannabis sativa HOM05D003411 ORTHO05D003914 1.2e-28 130.6 68 80.9
Duzib212G0817 Durio zibethinus HOM05D003411 ORTHO05D003914 1.2e-28 130.6 68 80.9
Gohir.A10G128900 Gossypium hirsutum HOM05D003411 ORTHO05D003914 1.2e-28 130.6 68 80.9
Gohir.D10G137200 Gossypium hirsutum HOM05D003411 ORTHO05D003914 1.2e-28 130.6 68 80.9
Gorai.011G152400 Gossypium raimondii HOM05D003411 ORTHO05D003914 1.2e-28 130.6 68 80.9
arahy.Tifrunner.gnm1.ann1.MR4BJU Arachis hypogaea HOM05D003411 ORTHO05D003914 1.6e-28 130.2 68 80.9
MD04G1018500 Malus domestica HOM05D003411 ORTHO05D003914 1.6e-28 130.2 68 80.9
THA.LOC104804791 Tarenaya hassleriana HOM05D003411 ORTHO05D003914 1.6e-28 130.2 68 79.4
arahy.Tifrunner.gnm1.ann1.GXY8DM Arachis hypogaea HOM05D003411 ORTHO05D003914 2.1e-28 129.8 68 80.9
CAN.G1155.14 Capsicum annuum HOM05D003411 ORTHO05D003914 2.1e-28 129.8 68 79.4
Glyma.08G108000 Glycine max HOM05D003411 ORTHO05D003914 2.1e-28 129.8 68 79.4
Gorai.005G027300 Gossypium raimondii HOM05D003411 ORTHO05D003914 2.1e-28 129.8 68 77.9
MELO3C021162.2 Cucumis melo HOM05D003411 ORTHO05D003914 2.7e-28 129.4 68 80.9
COL.COLO4_05435 Corchorus olitorius HOM05D003411 ORTHO05D003914 3.6e-28 129.0 68 80.9
CsaV3_6G001060 Cucumis sativus L. HOM05D003411 ORTHO05D003914 3.6e-28 129.0 68 80.9
Peaxi162Scf00286g01031 Petunia axillaris HOM05D003411 ORTHO05D003914 3.6e-28 129.0 68 79.4
TAR636G0144 Trochodendron aralioides HOM05D003411 ORTHO05D003914 3.6e-28 129.0 68 79.4
Sed0020137 Sechium edule HOM05D003411 ORTHO05D003914 4.6e-28 128.6 68 80.9
PGSC0003DMG400020582 Solanum tuberosum HOM05D003411 ORTHO05D003914 4.6e-28 128.6 68 79.4
Gohir.A02G018900 Gossypium hirsutum HOM05D003411 ORTHO05D003914 6.1e-28 128.3 68 79.4
Solyc09g092430.3 Solanum lycopersicum HOM05D003411 ORTHO05D003914 6.1e-28 128.3 68 77.9
vmacro00433 Vaccinium macrocarpon HOM05D003411 ORTHO05D003914 6.1e-28 128.3 68 77.9
ClCG06G003230 Citrullus lanatus HOM05D003411 ORTHO05D003914 7.9e-28 127.9 68 79.4
Gohir.A02G018400 Gossypium hirsutum HOM05D003411 ORTHO05D003914 7.9e-28 127.9 68 80.9
QL07p010164 Quercus lobata HOM05D003411 ORTHO05D003914 7.9e-28 127.9 67 79.1
Thecc.04G193400 Theobroma cacao HOM05D003411 ORTHO05D003914 7.9e-28 127.9 68 79.4
EL10Ac3g07442 Beta vulgaris HOM05D003411 ORTHO05D003914 1.0e-27 127.5 68 79.4
Cfa008639 Carpinus fangiana HOM05D003411 ORTHO05D003914 1.0e-27 127.5 68 80.9
Duzib151G0297 Durio zibethinus HOM05D003411 ORTHO05D003914 1.0e-27 127.5 68 79.4
Potri.017G060000 Populus trichocarpa HOM05D003411 ORTHO05D003914 1.0e-27 127.5 68 77.9
Sabra16G0203800 Salix brachista HOM05D003411 ORTHO05D003914 1.0e-27 127.5 68 77.9
SGA_v2.0_scaffold19G08787 Striga asiatica HOM05D003411 ORTHO05D003914 1.0e-27 127.5 68 77.9
Cc03_g09400 Coffea canephora HOM05D003411 ORTHO05D003914 1.3e-27 127.1 68 76.5
Dinv18405 Davidia involucrata HOM05D003411 ORTHO05D003914 1.3e-27 127.1 68 77.9
Glyma.11G254300 Glycine max HOM05D003411 ORTHO05D003914 1.3e-27 127.1 68 76.5
Gohir.D02G021500 Gossypium hirsutum HOM05D003411 ORTHO05D003914 1.3e-27 127.1 68 75.0
Gohir.D02G021600 Gossypium hirsutum HOM05D003411 ORTHO05D003914 1.3e-27 127.1 68 75.0
Gorai.005G027000 Gossypium raimondii HOM05D003411 ORTHO05D003914 1.3e-27 127.1 68 75.0
Gorai.005G027100 Gossypium raimondii HOM05D003411 ORTHO05D003914 1.3e-27 127.1 68 75.0
TWI53G0146 Tripterygium wilfordii HOM05D003411 ORTHO05D003914 1.3e-27 127.1 68 77.9
Glyma.05G151300 Glycine max HOM05D003411 ORTHO05D003914 1.8e-27 126.7 68 77.9
Gohir.A02G018300 Gossypium hirsutum HOM05D003411 ORTHO05D003914 1.8e-27 126.7 68 75.0
Lsat_1_v5_gn_6_59580 Lactuca sativa HOM05D003411 ORTHO05D003914 1.8e-27 126.7 68 77.9
Lj6g0005715 Lotus japonicus HOM05D003411 ORTHO05D003914 1.8e-27 126.7 68 77.9
Manes.01G003200 Manihot esculenta HOM05D003411 ORTHO05D003914 1.8e-27 126.7 68 77.9
MBI07_g08879_MAGBIO Magnolia biondii HOM05D003411 ORTHO05D003914 2.3e-27 126.3 68 77.9
Potri.001G321600 Populus trichocarpa HOM05D003411 ORTHO05D003914 2.3e-27 126.3 68 76.5
QL06p026812 Quercus lobata HOM05D003411 ORTHO05D003914 2.3e-27 126.3 67 77.6
Rhsim09G0061400 Rhododendron simsii HOM05D003411 ORTHO05D003914 2.3e-27 126.3 68 76.5
THA.LOC104822225 Tarenaya hassleriana HOM05D003411 ORTHO05D003914 2.3e-27 126.3 68 76.5
arahy.Tifrunner.gnm1.ann1.E7M6AK Arachis hypogaea HOM05D003411 ORTHO05D003914 3.0e-27 125.9 68 76.5
arahy.Tifrunner.gnm1.ann1.EMW6AM Arachis hypogaea HOM05D003411 ORTHO05D003914 3.0e-27 125.9 68 76.5
Carub.0007s2839 Capsella rubella HOM05D003411 ORTHO05D003914 3.0e-27 125.9 68 75.0
AUR62018543 Chenopodium quinoa HOM05D003411 ORTHO05D003914 3.0e-27 125.9 68 79.4
AUR62020875 Chenopodium quinoa HOM05D003411 ORTHO05D003914 3.0e-27 125.9 68 79.4
Glyma.18G002800 Glycine max HOM05D003411 ORTHO05D003914 3.9e-27 125.6 68 75.0
Gorai.005G027200 Gossypium raimondii HOM05D003411 ORTHO05D003914 3.9e-27 125.6 68 79.4
Sopen09g035330 Solanum pennellii HOM05D003411 ORTHO05D003914 3.9e-27 125.6 68 76.5
Aa31LG9G3320 Aethionema arabicum HOM05D003411 ORTHO05D003914 5.1e-27 125.2 68 76.5
AT4G14040 Arabidopsis thaliana HOM05D003411 ORTHO05D003914 5.1e-27 125.2 68 75.0
BcaB04g18108 Brassica carinata HOM05D003411 ORTHO05D003914 5.1e-27 125.2 68 75.0
BcaC07g37715 Brassica carinata HOM05D003411 ORTHO05D003914 5.1e-27 125.2 68 75.0
A08p10280 Brassica napus HOM05D003411 ORTHO05D003914 5.1e-27 125.2 68 75.0
BolC8t48094H Brassica oleracea HOM05D003411 ORTHO05D003914 5.1e-27 125.2 68 75.0
BraA08t33026Z Brassica rapa HOM05D003411 ORTHO05D003914 5.1e-27 125.2 68 75.0
Carub.0007s2838 Capsella rubella HOM05D003411 ORTHO05D003914 5.1e-27 125.2 68 73.5
Thhalv10024991m.g Eutrema salsugineum HOM05D003411 ORTHO05D003914 5.1e-27 125.2 68 75.0
Medtr3g084410 Medicago truncatula HOM05D003411 ORTHO05D003914 5.1e-27 125.2 68 76.5
Sabra17G0053800 Salix brachista HOM05D003411 ORTHO05D003914 5.1e-27 125.2 68 76.5
SalBow3G1551 Salvia bowleyana HOM05D003411 ORTHO05D003914 5.1e-27 125.2 68 77.9
Hund19016 Selenicereus undatus HOM05D003411 ORTHO05D003914 5.1e-27 125.2 68 76.5
TPR.G28943 Trifolium pratense HOM05D003411 ORTHO05D003914 5.1e-27 125.2 68 76.5
BcaB02g08636 Brassica carinata HOM05D003411 ORTHO05D003914 6.7e-27 124.8 68 75.0
BcaB02g08638 Brassica carinata HOM05D003411 ORTHO05D003914 6.7e-27 124.8 68 75.0
A04p08100 Brassica napus HOM05D003411 ORTHO05D003914 6.7e-27 124.8 68 75.0
A04p08110 Brassica napus HOM05D003411 ORTHO05D003914 6.7e-27 124.8 68 75.0
A08p10270 Brassica napus HOM05D003411 ORTHO05D003914 6.7e-27 124.8 68 73.5
BraA04t16498Z Brassica rapa HOM05D003411 ORTHO05D003914 6.7e-27 124.8 68 75.0
BraA04t16500Z Brassica rapa HOM05D003411 ORTHO05D003914 6.7e-27 124.8 68 75.0
BraA08t33025Z Brassica rapa HOM05D003411 ORTHO05D003914 6.7e-27 124.8 68 73.5
Gohir.D02G021700 Gossypium hirsutum HOM05D003411 ORTHO05D003914 6.7e-27 124.8 68 77.9
Lj6C367T9 Lonicera japonica HOM05D003411 ORTHO05D003914 6.7e-27 124.8 68 76.5
PSO017G4415 Papaver somniferum HOM05D003411 ORTHO05D003914 6.7e-27 124.8 68 76.5
Sp7g11850 Schrenkiella parvula HOM05D003411 ORTHO05D003914 6.7e-27 124.8 68 75.0
Actinidia35836 Actinidia chinensis HOM05D003411 ORTHO05D003914 8.8e-27 124.4 68 76.5
BcaB04g18107 Brassica carinata HOM05D003411 ORTHO05D003914 8.8e-27 124.4 68 73.5
BcaC02g09367 Brassica carinata HOM05D003411 ORTHO05D003914 8.8e-27 124.4 68 75.0
C04p41770 Brassica napus HOM05D003411 ORTHO05D003914 8.8e-27 124.4 68 75.0
BolC4t25759H Brassica oleracea HOM05D003411 ORTHO05D003914 8.8e-27 124.4 68 75.0
Nitab4.5_0000451g0080 Nicotiana tabacum HOM05D003411 ORTHO05D003914 8.8e-27 124.4 68 76.5
RcHm_v2.0_Chr4g0413261 Rosa chinensis HOM05D003411 ORTHO05D003914 8.8e-27 124.4 68 76.5
AL7G42390 Arabidopsis lyrata HOM05D003411 ORTHO05D003914 1.1e-26 124.0 68 73.5
Cpa.g.sc157.38 Carica papaya HOM05D003411 ORTHO05D003914 1.1e-26 124.0 68 77.9
Haze_11665 Corylus avellana HOM05D003411 ORTHO05D003914 1.1e-26 124.0 68 76.5
Eucgr.H02650 Eucalyptus grandis HOM05D003411 ORTHO05D003914 1.1e-26 124.0 68 76.5
AT4G14030 Arabidopsis thaliana HOM05D003411 ORTHO05D003914 1.5e-26 123.6 68 73.5
CARHR220050 Cardamine hirsuta HOM05D003411 ORTHO05D003914 1.5e-26 123.6 68 73.5
CiPaw.02G062900 Carya illinoinensis HOM05D003411 ORTHO05D003914 1.5e-26 123.6 68 76.5
Haze_01382 Corylus avellana HOM05D003411 ORTHO05D003914 1.5e-26 123.6 68 76.5
Thhalv10025040m.g Eutrema salsugineum HOM05D003411 ORTHO05D003914 1.5e-26 123.6 68 73.5
SalBow8G4879 Salvia bowleyana HOM05D003411 ORTHO05D003914 1.5e-26 123.6 68 75.0
BcaC07g37696 Brassica carinata HOM05D003411 ORTHO05D003914 1.9e-26 123.2 68 73.5
BolC8t48092H Brassica oleracea HOM05D003411 ORTHO05D003914 1.9e-26 123.2 68 73.5
CSS0031323 Camellia sinensis var. sinensis HOM05D003411 ORTHO05D003914 1.9e-26 123.2 68 75.0
CANSAT78G1476 Cannabis sativa HOM05D003411 ORTHO05D003914 1.9e-26 123.2 68 76.5
FvH4_4g13170 Fragaria vesca HOM05D003411 ORTHO05D003914 1.9e-26 123.2 68 75.0
FAN07G1736 Fragaria x ananassa HOM05D003411 ORTHO05D003914 1.9e-26 123.2 68 75.0
FAN12G0475 Fragaria x ananassa HOM05D003411 ORTHO05D003914 1.9e-26 123.2 68 75.0
SalBow8G2610 Salvia bowleyana HOM05D003411 ORTHO05D003914 1.9e-26 123.2 68 75.0
Atru.chr4.1551 Acer truncatum HOM05D003411 ORTHO05D003914 2.5e-26 122.9 68 76.5
DCAR_026664 Daucus carota HOM05D003411 ORTHO05D003914 2.5e-26 122.9 68 73.5
Hma1.2p1_2624F.1_g325610 Hydrangea macrophylla HOM05D003411 ORTHO05D003914 2.5e-26 122.9 67 76.1
PSO017G0142 Papaver somniferum HOM05D003411 ORTHO05D003914 2.5e-26 122.9 68 75.0
PSO063G3966 Papaver somniferum HOM05D003411 ORTHO05D003914 2.5e-26 122.9 68 75.0
SEGI_38348 Sequoiadendron giganteum HOM05D003411 ORTHO05D003914 2.5e-26 122.9 68 73.5
Ah.13g077880 Amaranthus hybridus HOM05D003411 ORTHO05D003914 3.3e-26 122.5 68 75.0
Aqoxy2G03916 Aquilegia oxysepala HOM05D003411 ORTHO05D003914 3.3e-26 122.5 68 76.5
CiPaw.02G063100 Carya illinoinensis HOM05D003411 ORTHO05D003914 3.3e-26 122.5 68 75.0
PGR083G0313 Punica granatum HOM05D003411 ORTHO05D003914 3.3e-26 122.5 68 76.5
Lalb_Chr23g0278281 Lupinus albus HOM05D003411 ORTHO05D003914 4.3e-26 122.1 68 75.0
GSVIVG01021049001 Vitis vinifera HOM05D003411 ORTHO05D003914 4.3e-26 122.1 68 76.5
AL7G42400 Arabidopsis lyrata HOM05D003411 ORTHO05D003914 5.7e-26 121.7 68 72.1
BcaB04g18106 Brassica carinata HOM05D003411 ORTHO05D003914 5.7e-26 121.7 68 72.1
BcaC07g37697 Brassica carinata HOM05D003411 ORTHO05D003914 5.7e-26 121.7 68 72.1
A08p10260 Brassica napus HOM05D003411 ORTHO05D003914 5.7e-26 121.7 68 72.1
BolC8t48088H Brassica oleracea HOM05D003411 ORTHO05D003914 5.7e-26 121.7 68 72.1
BraA08t33023Z Brassica rapa HOM05D003411 ORTHO05D003914 5.7e-26 121.7 68 72.1
CDE07G1304 Ceratophyllum demersum HOM05D003411 ORTHO05D003914 5.7e-26 121.7 68 73.5
Psat5g099520 Pisum sativum HOM05D003411 ORTHO05D003914 5.7e-26 121.7 68 72.1
CARHR220040 Cardamine hirsuta HOM05D003411 ORTHO05D003914 7.4e-26 121.3 68 72.1
Ca_16422_v3 Cicer arietinum L. HOM05D003411 ORTHO05D003914 7.4e-26 121.3 68 73.5
Phvul.001G265900 Phaseolus vulgaris HOM05D003411 ORTHO05D003914 7.4e-26 121.3 68 72.1
Sp7g11830 Schrenkiella parvula HOM05D003411 ORTHO05D003914 7.4e-26 121.3 68 73.5
VMungo1383G0705 Vigna mungo HOM05D003411 ORTHO05D003914 7.4e-26 121.3 68 72.1
CiPaw.01G115300 Carya illinoinensis HOM05D003411 ORTHO05D003914 9.7e-26 120.9 68 76.5
Prupe.1G167300 Prunus persica HOM05D003411 ORTHO05D003914 1.3e-25 120.6 68 72.1
MSTRG.9788 Avicennia marina HOM05D003411 ORTHO05D003914 1.7e-25 120.2 68 76.5
BcaC02g09366 Brassica carinata HOM05D003411 ORTHO05D003914 1.7e-25 120.2 68 72.1
BolC4t25757H Brassica oleracea HOM05D003411 ORTHO05D003914 1.7e-25 120.2 68 72.1
Ciclev10004848m.g Citrus clementina HOM05D003411 ORTHO05D003914 1.7e-25 120.2 68 75.0
Pp3c11_15680 Physcomitrium patens HOM05D003411 ORTHO05D003914 1.7e-25 120.2 96 59.4
Os01g0916400 Oryza sativa ssp. japonica HOM05D003411 ORTHO05D003914 3.7e-25 119.0 69 75.4
Migut.N00427 Erythranthe guttata HOM05D003411 ORTHO05D003914 1.1e-24 117.5 68 70.6
Zm00001eb143460 Zea mays HOM05D003411 ORTHO05D003914 2.4e-24 116.3 69 72.5
Hma1.2p1_0349F.1_g131970 Hydrangea macrophylla HOM05D003411 ORTHO05D003914 2.0e-23 113.2 63 76.2
SMO230G0057 Selaginella moellendorffii HOM05D003411 ORTHO05D003914 2.6e-23 112.8 68 70.6
Mapoly0004s0070 Marchantia polymorpha HOM05D003411 ORTHO05D003914 4.5e-23 112.1 68 69.1
AagrBONN_evm.TU.Sc2ySwM_228.5065 Anthoceros agrestis HOM05D003411 ORTHO05D003914 5.9e-23 111.7 68 69.1
CSS0027208 Camellia sinensis var. sinensis HOM05D003411 ORTHO05D003914 5.0e-22 108.6 68 63.2
Cre03.g166050 Chlamydomonas reinhardtii HOM05D003411 ORTHO05D003914 2.7e-20 102.8 68 60.3
Medtr8g083160 Medicago truncatula HOM05D003411 ORTHO05D003914 3.0e-19 99.4 64 64.1
Aqoxy3G02005 Aquilegia oxysepala HOM05D003411 ORTHO05D003914 5.7e-18 95.1 58 67.2
CSS0017016 Camellia sinensis var. sinensis HOM05D003411 ORTHO05D003914 6.9e-16 88.2 52 71.2
Nn1g08155 Nelumbo nucifera HOM05D003411 ORTHO05D003914 2.9e-06 56.2 29 75.9


User provided reference genes

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