Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 4.0e-241 837.8 456 100.0
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 3.1e-108 396.4 456 52.6
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 1.2e-107 394.4 451 53.2
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 3.7e-106 389.4 456 52.9
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 1.2e-104 384.4 449 51.7
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 1.0e-103 381.3 450 52.0
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 5.6e-102 375.6 448 52.5
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 1.2e-101 374.4 450 50.9
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 3.6e-101 372.9 448 51.8
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 4.7e-101 372.5 449 51.7
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 6.2e-101 372.1 442 52.0
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 6.2e-101 372.1 449 50.3
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 8.1e-101 371.7 447 50.1
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 2.3e-100 370.2 442 51.6
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 2.3e-100 370.2 442 51.8
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 4.0e-100 369.4 451 50.3
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 2.0e-99 367.1 442 51.8
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 4.4e-99 365.9 449 50.1
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 5.8e-99 365.5 494 47.8
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 1.3e-98 364.4 448 50.7
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 6.4e-98 362.1 454 50.7
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 1.4e-97 360.9 452 48.7
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 1.4e-97 360.9 455 49.9
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 1.9e-97 360.5 442 50.0
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 3.2e-97 359.8 446 50.7
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 4.1e-97 359.4 452 54.9
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 4.1e-97 359.4 442 50.2
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 5.4e-97 359.0 465 49.5
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 7.1e-97 358.6 454 48.7
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 9.2e-97 358.2 448 50.2
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 1.6e-96 357.5 448 49.1
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 3.5e-96 356.3 459 47.3
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.3e-95 354.4 444 49.1
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 1.7e-95 354.0 449 49.2
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 1.7e-95 354.0 454 49.6
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 2.3e-95 353.6 459 48.4
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 3.0e-95 353.2 452 49.3
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 3.9e-95 352.8 452 49.1
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 6.6e-95 352.1 456 47.6
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.5e-94 350.9 446 48.9
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 1.5e-94 350.9 446 49.3
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 1.5e-94 350.9 448 47.3
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 1.5e-94 350.9 451 48.3
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 1.9e-94 350.5 451 48.1
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 3.3e-94 349.7 446 48.9
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 4.3e-94 349.4 445 47.9
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 4.3e-94 349.4 504 46.0
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 1.2e-93 347.8 457 47.7
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 2.8e-93 346.7 455 48.6
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 2.8e-93 346.7 411 50.4
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 3.6e-93 346.3 416 50.5
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 6.2e-93 345.5 448 45.5
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 6.2e-93 345.5 447 49.7
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 1.1e-92 344.7 454 46.0
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 1.8e-92 344.0 451 47.5
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 4.0e-92 342.8 396 52.3
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 4.0e-92 342.8 442 50.0
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 6.8e-92 342.0 451 47.2
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 3.4e-91 339.7 462 46.3
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 3.4e-91 339.7 453 47.0
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 3.4e-91 339.7 445 47.4
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 3.4e-91 339.7 454 48.5
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 4.4e-91 339.3 457 45.7
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 7.6e-91 338.6 444 48.0
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 1.7e-90 337.4 466 46.4
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 2.2e-90 337.0 452 47.3
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 1.1e-89 334.7 445 47.0
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 3.2e-89 333.2 450 48.4
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 4.1e-89 332.8 446 46.0
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 7.1e-89 332.0 451 47.7
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 1.2e-88 331.3 450 48.2
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 1.6e-88 330.9 458 45.0
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 2.1e-88 330.5 450 48.4
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 2.7e-88 330.1 452 48.9
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 7.8e-88 328.6 444 46.8
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 1.0e-87 328.2 454 46.3
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 3.9e-87 326.2 451 47.9
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 8.7e-87 325.1 444 46.4
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 4.3e-86 322.8 444 48.0
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 9.6e-86 321.6 443 48.3
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 1.2e-85 321.2 450 47.6
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 1.6e-85 320.9 331 57.4
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 2.1e-85 320.5 442 45.2
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 3.6e-85 319.7 445 47.6
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 1.1e-84 318.2 449 46.3
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 1.4e-84 317.8 396 49.7
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 1.5e-83 314.3 385 50.6
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 5.8e-83 312.4 451 47.0
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 7.6e-83 312.0 372 51.3
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 1.7e-82 310.8 452 45.8
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 2.4e-81 307.0 353 51.6
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.2e-80 304.7 329 55.0
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 2.7e-80 303.5 468 42.5
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 4.6e-80 302.8 331 55.0
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 7.8e-80 302.0 323 55.4
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 1.3e-79 301.2 441 45.6
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.7e-79 300.8 323 55.1
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 3.0e-79 300.1 393 47.6
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 1.5e-75 287.7 331 52.3
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 2.6e-75 287.0 337 52.2
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 6.4e-74 282.3 322 52.8
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 1.9e-73 280.8 330 49.7
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 2.4e-73 280.4 342 51.2
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 7.1e-73 278.9 334 52.1
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 9.3e-73 278.5 334 51.2
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 3.5e-72 276.6 443 42.2
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 4.8e-69 266.2 347 48.1
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 5.8e-67 259.2 329 48.3
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 3.9e-55 219.9 383 39.7
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 8.7e-55 218.8 255 52.2
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 1.5e-51 208.0 458 33.8
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 2.5e-49 200.7 464 33.2
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 3.9e-39 166.8 158 60.8
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 6.7e-39 166.0 462 29.7
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 8.8e-39 165.6 159 59.1
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 1.5e-35 154.8 220 43.6
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 5.2e-31 139.8 154 52.6
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 9.7e-30 135.6 343 35.0
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 4.0e-23 113.6 161 43.5
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 4.1e-20 103.6 112 50.9
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 1.1e-17 95.5 57 82.5
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 3.6e-16 90.5 121 45.5
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 4.1e-12 77.0 109 45.0
SEGI_21584 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 1.6e-11 75.1 76 50.0
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 7.7e-11 72.8 115 41.7
TPR.G35563 Trifolium pratense HOM05D005892 ORTHO05D007364 4.7e-08 63.5 84 46.4
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 9.8e-06 55.8 110 36.4


User provided reference genes

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