Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 9.4e-300 1032.7 508 100.0
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 6.4e-216 754.2 437 86.0
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 5.1e-189 664.8 510 64.1
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.7e-187 659.8 506 64.0
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 5.3e-186 654.8 478 64.2
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.5e-185 653.3 472 66.1
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 1.3e-184 650.2 506 62.6
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 8.5e-184 647.5 472 65.3
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 1.1e-183 647.1 488 64.1
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 1.4e-183 646.7 501 61.7
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 1.9e-183 646.4 491 63.5
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 2.5e-183 646.0 472 66.1
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 2.5e-183 646.0 501 61.7
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 3.2e-183 645.6 509 60.9
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 4.2e-183 645.2 469 66.1
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 5.5e-183 644.8 491 62.3
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 2.7e-182 642.5 504 61.9
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 3.6e-182 642.1 501 61.5
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 3.6e-182 642.1 470 65.3
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 1.0e-181 640.6 488 63.1
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 1.8e-181 639.8 486 63.8
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 2.3e-181 639.4 472 64.6
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.1e-180 637.1 469 64.6
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 1.5e-180 636.7 476 64.5
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 7.4e-180 634.4 493 61.9
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 7.4e-180 634.4 510 61.0
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 1.3e-179 633.6 472 64.0
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 2.2e-179 632.9 464 64.4
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 2.8e-179 632.5 482 62.4
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 4.8e-179 631.7 498 61.2
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 1.4e-178 630.2 490 62.7
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 2.4e-178 629.4 478 63.2
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 4.1e-178 628.6 500 62.0
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 5.3e-178 628.2 500 60.8
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 7.0e-178 627.9 481 63.0
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 7.0e-178 627.9 491 62.7
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 2.0e-177 626.3 490 62.9
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.0e-177 626.3 490 62.7
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.0e-177 626.3 490 62.7
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 1.7e-176 623.2 490 62.4
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 2.9e-176 622.5 508 60.2
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 6.5e-176 621.3 470 63.4
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 8.5e-176 620.9 490 62.2
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 1.9e-175 619.8 492 61.6
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 2.5e-175 619.4 512 60.4
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 3.2e-175 619.0 472 63.6
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 9.4e-175 617.5 507 61.1
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 9.4e-175 617.5 490 61.2
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 9.4e-175 617.5 456 64.0
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 9.4e-175 617.5 501 60.9
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 1.2e-174 617.1 498 60.4
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 2.1e-174 616.3 478 61.1
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 2.7e-174 615.9 473 61.9
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 3.6e-174 615.5 472 62.9
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 1.0e-173 614.0 468 63.2
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 3.9e-173 612.1 476 61.3
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 5.2e-173 611.7 498 60.0
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 6.7e-173 611.3 473 62.6
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 6.7e-173 611.3 486 60.9
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 8.8e-173 610.9 489 62.0
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 8.8e-173 610.9 466 62.9
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 1.1e-172 610.5 508 58.5
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 1.1e-172 610.5 483 60.0
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 1.1e-172 610.5 466 62.7
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 1.5e-172 610.1 472 62.3
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 2.6e-172 609.4 523 57.7
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 5.7e-172 608.2 501 59.3
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 7.4e-172 607.8 469 62.5
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 7.4e-172 607.8 492 60.6
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 1.3e-171 607.1 474 62.4
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 2.8e-171 605.9 485 60.6
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 3.7e-171 605.5 489 59.3
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 6.3e-171 604.7 467 63.4
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 1.1e-170 604.0 493 60.6
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 1.1e-170 604.0 466 61.4
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 2.4e-170 602.8 470 63.4
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 2.4e-170 602.8 502 59.8
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 4.1e-170 602.1 535 56.6
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 9.1e-170 600.9 493 60.2
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 9.1e-170 600.9 520 58.1
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 9.1e-170 600.9 517 58.6
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 1.2e-169 600.5 488 60.2
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 1.6e-169 600.1 512 58.8
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 2.0e-169 599.7 472 61.4
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 3.5e-169 599.0 491 59.7
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 5.9e-169 598.2 503 59.6
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 1.0e-168 597.4 502 59.4
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 1.7e-168 596.7 467 61.2
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 2.2e-168 596.3 487 60.0
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 2.2e-168 596.3 481 61.1
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 2.9e-168 595.9 465 61.1
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 5.0e-168 595.1 488 59.8
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 1.1e-167 594.0 472 61.2
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 2.5e-167 592.8 469 60.8
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 7.2e-167 591.3 492 59.6
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 1.2e-166 590.5 474 60.5
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 2.1e-166 589.7 437 65.0
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 1.4e-165 587.0 543 54.9
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 1.8e-165 586.6 472 60.4
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 1.8e-165 586.6 469 61.0
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 4.0e-165 585.5 489 58.1
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 5.2e-165 585.1 472 60.2
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 5.2e-165 585.1 472 60.2
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 5.2e-165 585.1 472 60.2
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 2.0e-164 583.2 535 53.8
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 2.0e-164 583.2 599 50.8
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 4.4e-164 582.0 469 60.6
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 5.7e-164 581.6 444 62.4
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 9.7e-164 580.9 472 60.8
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 4.8e-163 578.6 475 59.4
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 6.3e-163 578.2 456 61.8
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 8.3e-163 577.8 475 59.4
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 1.8e-162 576.6 471 59.9
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 2.4e-162 576.2 503 57.7
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 5.3e-162 575.1 471 59.9
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 1.7e-160 570.1 471 59.2
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 2.9e-160 569.3 473 60.7
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 2.7e-158 562.8 438 63.9
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 6.8e-157 558.1 490 56.1
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 2.6e-156 556.2 550 52.0
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 8.3e-155 551.2 500 55.2
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 7.0e-154 548.1 531 53.9
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 5.9e-153 545.0 479 57.6
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 1.3e-152 543.9 631 46.4
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.3e-152 543.1 409 63.1
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 2.3e-152 543.1 477 57.4
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 1.5e-151 540.4 475 58.3
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 1.5e-151 540.4 408 63.5
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 7.2e-151 538.1 441 58.7
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.2e-150 537.3 397 64.0
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 4.0e-149 532.3 475 57.1
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 9.8e-148 527.7 504 54.0
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 4.7e-142 508.8 429 58.3
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 4.4e-140 502.3 471 55.4
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 1.7e-136 490.3 452 52.4
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 2.9e-131 473.0 508 48.2
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 2.7e-129 466.5 462 50.4
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.1e-127 461.1 454 53.3
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 3.3e-127 459.5 454 49.1
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 2.7e-121 439.9 411 51.1
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 4.3e-119 432.6 339 63.7
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.7e-115 420.6 389 56.0
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 9.3e-114 414.8 524 43.1
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 1.4e-109 401.0 335 58.2
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 5.1e-96 355.9 273 63.4
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 1.3e-75 288.1 340 44.7
SalBow3G3178 Salvia bowleyana HOM05D003877 ORTHO05D004647 9.4e-66 255.4 209 57.4
CsaV3_2G012250 Cucumis sativus L. HOM05D003877 ORTHO05D004647 7.2e-58 229.2 231 53.2
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 2.5e-50 204.1 151 64.2
SGA_v2.0_scaffold85G26702 Striga asiatica HOM05D003877 ORTHO05D004647 9.4e-50 202.2 217 49.8
CBR_g38028 Chara braunii HOM05D003877 ORTHO05D004647 9.1e-45 185.7 306 36.6
Cre13.g568600 Chlamydomonas reinhardtii HOM05D003877 ORTHO05D004647 2.8e-38 164.1 454 30.8
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 4.5e-36 156.8 99 70.7
TPR.G10202 Trifolium pratense HOM05D003877 ORTHO05D004647 3.6e-33 147.1 110 60.9
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.3e-30 138.7 150 50.0
Lsat_1_v5_gn_5_175980 Lactuca sativa HOM05D003877 ORTHO05D004647 1.2e-28 132.1 113 55.8
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 1.1e-26 125.6 112 56.2
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 1.9e-26 124.8 108 57.4
ATR0681G284 Amborella trichopoda HOM05D003877 ORTHO05D038325 1.6e-25 121.7 71 78.9
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 2.1e-25 121.3 86 68.6
unitig_8.g4097 Utricularia gibba HOM05D003877 ORTHO05D004647 3.1e-24 117.5 103 54.4
SEGI_27537 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 2.6e-23 114.4 72 72.2
Carub.0003s0920 Capsella rubella HOM05D000468 ORTHO05D114682 4.7e-17 93.6 127 48.8
CSS0015783 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.8e-16 91.7 111 49.5
Nn5g28638 Nelumbo nucifera HOM05D003877 ORTHO05D004647 2.3e-16 91.3 81 55.6
TPR.G5082 Trifolium pratense HOM05D003877 ORTHO05D004647 1.7e-14 85.1 80 48.8
Nn7g36267 Nelumbo nucifera HOM05D003877 ORTHO05D004647 4.1e-13 80.5 72 55.6
MELO3C018376.2 Cucumis melo HOM05D003877 ORTHO05D004647 3.3e-10 70.9 45 73.3
SEGI_18884 Sequoiadendron giganteum HOM05D003877 ORTHO05D038325 3.6e-09 67.4 73 41.1
Manes.15G188901 Manihot esculenta HOM05D003877 ORTHO05D004647 8.1e-09 66.2 64 48.4
MELO3C033083.2 Cucumis melo HOM05D003877 ORTHO05D034944 1.5e-07 62.0 39 66.7
TPR.G30156 Trifolium pratense HOM05D003877 ORTHO05D004647 3.4e-07 60.8 72 44.4
TPR.G5048 Trifolium pratense HOM05D003877 ORTHO05D004647 4.4e-07 60.5 72 44.4
CSS0003201 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.9e-06 57.8 60 46.7


User provided reference genes

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