Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0068G087 Amborella trichopoda HOM05D006789 ORTHO05D008460 2.4e-78 295.4 151 100.0
MBI19_g19122_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 3.2e-62 241.9 151 79.5
TAR633G0905 Trochodendron aralioides HOM05D006789 ORTHO05D008460 6.0e-61 237.7 151 78.1
COL.COLO4_28906 Corchorus olitorius HOM05D006789 ORTHO05D008460 1.1e-59 233.4 151 77.5
Dinv24597 Davidia involucrata HOM05D006789 ORTHO05D008460 1.9e-59 232.6 151 76.8
Lalb_Chr15g0079361 Lupinus albus HOM05D006789 ORTHO05D008460 2.8e-58 228.8 151 74.8
Atru.chr3.2036 Acer truncatum HOM05D006789 ORTHO05D008460 3.6e-58 228.4 150 73.3
Manes.10G064901 Manihot esculenta HOM05D006789 ORTHO05D008460 4.8e-58 228.0 151 75.5
PGR044G1098 Punica granatum HOM05D006789 ORTHO05D008460 4.8e-58 228.0 151 74.2
Ciclev10029282m.g Citrus clementina HOM05D006789 ORTHO05D008460 1.1e-57 226.9 151 74.8
Gohir.A06G170900 Gossypium hirsutum HOM05D006789 ORTHO05D008460 3.1e-57 225.3 151 74.2
Gorai.010G208300 Gossypium raimondii HOM05D006789 ORTHO05D008460 3.1e-57 225.3 151 74.2
Gohir.D06G178700 Gossypium hirsutum HOM05D006789 ORTHO05D008460 6.9e-57 224.2 151 73.5
Gorai.N006000 Gossypium raimondii HOM05D006789 ORTHO05D008460 9.0e-57 223.8 151 73.5
Gorai.N006500 Gossypium raimondii HOM05D006789 ORTHO05D008460 9.0e-57 223.8 151 73.5
Thecc.10G129500 Theobroma cacao HOM05D006789 ORTHO05D008460 9.0e-57 223.8 151 74.2
Potri.008G012100 Populus trichocarpa HOM05D006789 ORTHO05D008460 1.5e-56 223.0 151 73.5
TWI38G1707 Tripterygium wilfordii HOM05D006789 ORTHO05D008460 1.5e-56 223.0 151 73.5
Sabra08G0007400 Salix brachista HOM05D006789 ORTHO05D008460 4.5e-56 221.5 151 72.2
arahy.Tifrunner.gnm1.ann1.G6AZCI Arachis hypogaea HOM05D006789 ORTHO05D008460 5.8e-56 221.1 151 72.8
arahy.Tifrunner.gnm1.ann1.KMQ9TB Arachis hypogaea HOM05D006789 ORTHO05D008460 5.8e-56 221.1 151 72.8
Glyma.06G315000 Glycine max HOM05D006789 ORTHO05D008460 7.6e-56 220.7 151 72.8
GSVIVG01027313001 Vitis vinifera HOM05D006789 ORTHO05D008460 7.6e-56 220.7 151 72.2
CSS0000309 Camellia sinensis var. sinensis HOM05D006789 ORTHO05D008460 1.7e-55 219.5 151 72.8
Hma1.2p1_0892F.1_g233210 Hydrangea macrophylla HOM05D006789 ORTHO05D008460 2.9e-55 218.8 151 71.5
Duzib106G0468 Durio zibethinus HOM05D006789 ORTHO05D008460 3.8e-55 218.4 150 72.7
Hma1.2p1_0892F.1_g233220 Hydrangea macrophylla HOM05D006789 ORTHO05D008460 3.8e-55 218.4 150 71.3
DCAR_006626 Daucus carota HOM05D006789 ORTHO05D008460 4.9e-55 218.0 150 71.3
MBI06_g23363_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 6.4e-55 217.6 150 71.3
Glyma.04G129000 Glycine max HOM05D006789 ORTHO05D008460 1.4e-54 216.5 151 70.9
CiPaw.14G037500 Carya illinoinensis HOM05D006789 ORTHO05D008460 2.4e-54 215.7 151 72.2
Lsat_1_v5_gn_2_28141 Lactuca sativa HOM05D006789 ORTHO05D008460 2.4e-54 215.7 146 73.3
MELO3C012309.2 Cucumis melo HOM05D006789 ORTHO05D008460 7.1e-54 214.2 148 70.9
CDE08G0307 Ceratophyllum demersum HOM05D006789 ORTHO05D008460 9.3e-54 213.8 150 72.0
Lj3g0008710 Lotus japonicus HOM05D006789 ORTHO05D008460 9.3e-54 213.8 151 70.9
Nitab4.5_0004033g0070 Nicotiana tabacum HOM05D006789 ORTHO05D008460 1.6e-53 213.0 148 71.6
Actinidia19614 Actinidia chinensis HOM05D000583 ORTHO05D000442 2.7e-53 212.2 156 71.2
Gohir.D06G178832 Gossypium hirsutum HOM05D006789 ORTHO05D008460 2.7e-53 212.2 149 70.5
SGA_v2.0_scaffold196G40989 Striga asiatica HOM05D006789 ORTHO05D008460 2.7e-53 212.2 151 70.2
SGA_v2.0_scaffold196G40996 Striga asiatica HOM05D006789 ORTHO05D008460 3.5e-53 211.8 151 70.9
CANSAT56G4131 Cannabis sativa HOM05D006789 ORTHO05D008460 4.6e-53 211.5 151 68.9
Haze_03403 Corylus avellana HOM05D006789 ORTHO05D008460 4.6e-53 211.5 178 63.5
Medtr3g006790 Medicago truncatula HOM05D006789 ORTHO05D008460 4.6e-53 211.5 151 70.2
CsaV3_5G034990 Cucumis sativus L. HOM05D006789 ORTHO05D008460 6.0e-53 211.1 148 70.3
Cc02_g32010 Coffea canephora HOM05D006789 ORTHO05D008460 7.9e-53 210.7 151 70.9
Nn2g14746 Nelumbo nucifera HOM05D006789 ORTHO05D008460 7.9e-53 210.7 147 71.4
ClCG05G022140 Citrullus lanatus HOM05D006789 ORTHO05D008460 1.0e-52 210.3 148 69.6
Peaxi162Scf00217g00626 Petunia axillaris HOM05D006789 ORTHO05D008460 1.0e-52 210.3 150 70.7
Rhsim07G0072100 Rhododendron simsii HOM05D006789 ORTHO05D008460 1.0e-52 210.3 163 68.1
AL6G14600 Arabidopsis lyrata HOM05D006789 ORTHO05D008460 1.8e-52 209.5 149 68.5
ECA238G4254 Erigeron canadensis HOM05D006789 ORTHO05D008460 1.8e-52 209.5 146 71.2
HanXRQChr06g0181521 Helianthus annuus HOM05D006789 ORTHO05D008460 1.8e-52 209.5 143 72.0
Aqoxy1G00021 Aquilegia oxysepala HOM05D006789 ORTHO05D008460 2.3e-52 209.1 151 68.2
Lj7C491T7 Lonicera japonica HOM05D006789 ORTHO05D008460 2.3e-52 209.1 152 70.4
THA.LOC104826955 Tarenaya hassleriana HOM05D006789 ORTHO05D008460 2.3e-52 209.1 148 69.6
TPR.G25521 Trifolium pratense HOM05D006789 ORTHO05D008460 2.3e-52 209.1 151 70.9
Prupe.2G061000 Prunus persica HOM05D006789 ORTHO05D008460 3.0e-52 208.8 147 72.8
AT5G04910 Arabidopsis thaliana HOM05D006789 ORTHO05D008460 3.9e-52 208.4 149 67.8
VMungo0647G0732 Vigna mungo HOM05D006789 ORTHO05D008460 5.1e-52 208.0 151 68.9
MSTRG.5084 Avicennia marina HOM05D006789 ORTHO05D008460 6.7e-52 207.6 152 69.1
EL10Ac4g08777 Beta vulgaris HOM05D006789 ORTHO05D008460 6.7e-52 207.6 150 67.3
SalBow4G0168 Salvia bowleyana HOM05D006789 ORTHO05D008460 6.7e-52 207.6 150 67.3
Thhalv10014633m.g Eutrema salsugineum HOM05D006789 ORTHO05D008460 8.7e-52 207.2 149 67.8
PSO339G2606 Papaver somniferum HOM05D006789 ORTHO05D008460 8.7e-52 207.2 150 68.7
MD02G1265000 Malus domestica HOM05D006789 ORTHO05D008460 1.9e-51 206.1 148 70.9
Gohir.A06G170906 Gossypium hirsutum HOM05D006789 ORTHO05D008460 2.5e-51 205.7 151 69.5
Nitab4.5_0002156g0010 Nicotiana tabacum HOM05D006789 ORTHO05D008460 2.5e-51 205.7 148 69.6
Oeu013184.1 Olea europaea HOM05D006789 ORTHO05D008460 2.5e-51 205.7 151 69.5
Carub.0006s0385 Capsella rubella HOM05D006789 ORTHO05D008460 3.3e-51 205.3 149 67.1
Os01g0265700 Oryza sativa ssp. japonica HOM05D006789 ORTHO05D008460 3.3e-51 205.3 150 67.3
Sp6g37890 Schrenkiella parvula HOM05D006789 ORTHO05D008460 3.3e-51 205.3 149 66.4
vmacro13786 Vaccinium macrocarpon HOM05D006789 ORTHO05D008460 3.3e-51 205.3 173 63.6
BcaC06g32200 Brassica carinata HOM05D006789 ORTHO05D008460 5.6e-51 204.5 149 66.4
Sed0016797 Sechium edule HOM05D006789 ORTHO05D008460 5.6e-51 204.5 148 68.9
Sopen10g012840 Solanum pennellii HOM05D006789 ORTHO05D008460 5.6e-51 204.5 148 69.6
Solyc10g039380.2 Solanum lycopersicum HOM05D006789 ORTHO05D008460 7.4e-51 204.1 148 69.6
A10p31220 Brassica napus HOM05D006789 ORTHO05D008460 9.6e-51 203.8 146 68.5
BraA10t45166Z Brassica rapa HOM05D006789 ORTHO05D008460 9.6e-51 203.8 146 68.5
Hund00694 Selenicereus undatus HOM05D006789 ORTHO05D008460 9.6e-51 203.8 161 64.0
SEGI_32817 Sequoiadendron giganteum HOM05D006789 ORTHO05D008460 9.6e-51 203.8 147 68.0
BolC9t59933H Brassica oleracea HOM05D006789 ORTHO05D008460 2.1e-50 202.6 146 68.5
Eucgr.J00312 Eucalyptus grandis HOM05D006789 ORTHO05D008460 2.1e-50 202.6 140 71.4
RcHm_v2.0_Chr1g0331321 Rosa chinensis HOM05D006789 ORTHO05D008460 2.1e-50 202.6 149 65.8
PSO384G0303 Papaver somniferum HOM05D006789 ORTHO05D008460 3.7e-50 201.8 150 67.3
FvH4_7g05010 Fragaria vesca HOM05D006789 ORTHO05D008460 8.1e-50 200.7 149 65.8
FAN06G2149 Fragaria x ananassa HOM05D006789 ORTHO05D008460 1.4e-49 199.9 147 66.7
C09p71840 Brassica napus HOM05D006789 ORTHO05D008460 1.8e-49 199.5 146 67.1
Phvul.008G161900 Phaseolus vulgaris HOM05D006789 ORTHO05D008460 1.8e-49 199.5 148 65.5
Zm00001eb128210 Zea mays HOM05D006789 ORTHO05D008460 4.0e-49 198.4 150 68.0
Migut.N01877 Erythranthe guttata HOM05D006789 ORTHO05D008460 7.6e-48 194.1 143 68.5
Carub.0010s0003 Capsella rubella HOM05D006789 ORTHO05D008460 3.8e-47 191.8 159 60.4
Sc22g0002280 Simmondsia chinensis HOM05D006789 ORTHO05D001455 3.8e-47 191.8 141 68.1
Aa31LG11G5790 Aethionema arabicum HOM05D006789 ORTHO05D008460 4.9e-47 191.4 149 63.8
FAN03G1759 Fragaria x ananassa HOM05D006789 ORTHO05D008460 8.7e-44 180.6 149 63.1
Psat5g230200 Pisum sativum HOM05D006789 ORTHO05D008460 2.4e-41 172.6 122 72.1
Sed0010043 Sechium edule HOM05D006789 ORTHO05D008460 2.4e-41 172.6 148 60.8
MBI05_g14944_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 4.2e-38 161.8 115 67.8
FAN01G0280 Fragaria x ananassa HOM05D006789 ORTHO05D008460 5.1e-36 154.8 149 55.0
unitig_26.g9495 Utricularia gibba HOM05D006789 ORTHO05D008460 1.1e-35 153.7 150 51.3
Gorai.010G208600 Gossypium raimondii HOM05D006789 ORTHO05D008460 2.6e-32 142.5 146 56.2
AUR62014306 Chenopodium quinoa HOM05D006789 ORTHO05D008460 2.9e-31 139.0 151 51.0
CARHR208350 Cardamine hirsuta HOM05D006789 ORTHO05D008460 2.5e-30 136.0 90 72.2
Pp3c10_8520 Physcomitrium patens HOM05D006789 ORTHO05D008460 1.4e-28 130.2 142 49.3
TAR633G1630 Trochodendron aralioides HOM05D006789 ORTHO05D008460 1.4e-28 130.2 86 75.6
TAR629G1007 Trochodendron aralioides HOM05D001508 ORTHO05D008460 2.3e-28 129.4 79 79.7
Actinidia29655 Actinidia chinensis HOM05D006789 ORTHO05D008460 2.6e-27 125.9 85 75.3
Mapoly0023s0087 Marchantia polymorpha HOM05D006789 ORTHO05D008460 1.8e-25 119.8 148 44.6
TAR636G3403 Trochodendron aralioides HOM05D006789 ORTHO05D008460 7.2e-22 107.8 72 75.0
SMO364G0543 Selaginella moellendorffii HOM05D006789 ORTHO05D008460 3.0e-20 102.4 152 40.1
Cfa005731 Carpinus fangiana HOM05D012552 ORTHO05D018926 1.8e-17 93.2 76 61.8
Cfa010449 Carpinus fangiana HOM05D006789 ORTHO05D008460 2.4e-17 92.8 62 71.0
BcaB03g15210 Brassica carinata HOM05D006789 ORTHO05D008460 9.1e-17 90.9 65 61.5
CBR_g54451 Chara braunii HOM05D003248 ORTHO05D000301 1.3e-15 87.0 218 31.7
Cfa006091 Carpinus fangiana HOM05D006789 ORTHO05D008460 2.2e-15 86.3 68 64.7
AUR62034099 Chenopodium quinoa HOM05D006789 ORTHO05D008460 3.8e-15 85.5 61 65.6
Ca_14025_v3 Cicer arietinum L. HOM05D006789 ORTHO05D008460 5.5e-14 81.6 61 62.3
SMO353G0288 Selaginella moellendorffii HOM05D006789 ORTHO05D008460 7.2e-14 81.3 133 39.1
Phvul.005G010900 Phaseolus vulgaris HOM05D006789 ORTHO05D008460 3.1e-09 65.9 61 52.5
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 5.3e-09 65.1 67 49.3
Cfa010304 Carpinus fangiana HOM05D012552 ORTHO05D018926 1.3e-07 60.5 79 48.1
Cre16.g683483 Chlamydomonas reinhardtii HOM05D006789 ORTHO05D008460 2.5e-06 56.2 71 40.8


User provided reference genes

Program Settings