Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0068G030 Amborella trichopoda HOM05D005841 ORTHO05D007132 5.9e-33 143.7 75 100.0
MBI19_g24060_MAGBIO Magnolia biondii HOM05D005841 ORTHO05D007132 1.3e-19 99.4 67 76.1
CDE02G3427 Ceratophyllum demersum HOM05D005841 ORTHO05D007132 8.2e-19 96.7 66 71.2
Dinv14310 Davidia involucrata HOM05D005841 ORTHO05D007132 1.8e-18 95.5 66 72.7
Zm00001eb126920 Zea mays HOM05D005841 ORTHO05D007132 9.1e-18 93.2 65 66.2
Dinv24065 Davidia involucrata HOM05D005841 ORTHO05D007132 2.6e-17 91.7 66 69.7
Cpa.g.sc33.143 Carica papaya HOM05D005841 ORTHO05D007132 3.5e-17 91.3 66 68.2
Os01g0104100 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 3.5e-17 91.3 65 66.2
Os02g0795300 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 3.5e-17 91.3 65 66.2
Actinidia22040 Actinidia chinensis HOM05D005841 ORTHO05D007132 4.5e-17 90.9 66 69.7
CiPaw.14G011500 Carya illinoinensis HOM05D005841 ORTHO05D007132 5.9e-17 90.5 66 69.7
Sc20g0000960 Simmondsia chinensis HOM05D005841 ORTHO05D007132 7.7e-17 90.1 66 66.7
MSTRG.26082 Avicennia marina HOM05D005841 ORTHO05D007132 1.0e-16 89.7 65 69.2
Nn2g15922 Nelumbo nucifera HOM05D005841 ORTHO05D007132 1.0e-16 89.7 62 71.0
CSS0015441 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 1.3e-16 89.4 66 69.7
COL.COLO4_09288 Corchorus olitorius HOM05D005841 ORTHO05D007132 1.7e-16 89.0 67 67.2
Ciclev10001427m.g Citrus clementina HOM05D005841 ORTHO05D007132 2.2e-16 88.6 65 69.2
QL04p022932 Quercus lobata HOM05D005841 ORTHO05D007132 2.9e-16 88.2 66 68.2
Haze_02951 Corylus avellana HOM05D005841 ORTHO05D007132 6.5e-16 87.0 66 65.2
Peaxi162Scf00258g00731 Petunia axillaris HOM05D005841 ORTHO05D007132 6.5e-16 87.0 66 63.6
GSVIVG01027370001 Vitis vinifera HOM05D005841 ORTHO05D007132 6.5e-16 87.0 65 66.2
TWI38G1535 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 8.5e-16 86.7 63 71.4
Atru.chr12.1096 Acer truncatum HOM05D005841 ORTHO05D007132 1.1e-15 86.3 66 65.2
Lju124A25T34 Lonicera japonica HOM05D005841 ORTHO05D007132 1.1e-15 86.3 66 68.2
PSO384G2928 Papaver somniferum HOM05D005841 ORTHO05D007132 1.5e-15 85.9 66 60.6
Nitab4.5_0000324g0020 Nicotiana tabacum HOM05D005841 ORTHO05D007132 1.9e-15 85.5 66 62.1
PSO339G0077 Papaver somniferum HOM05D005841 ORTHO05D007132 1.9e-15 85.5 66 60.6
Eucgr.G03178 Eucalyptus grandis HOM05D005841 ORTHO05D007132 2.5e-15 85.1 66 66.7
Hma1.2p1_3953F.1_g338070 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 2.5e-15 85.1 66 63.6
Rhsim03G0005600 Rhododendron simsii HOM05D005841 ORTHO05D007132 3.2e-15 84.7 66 65.2
SEGI_15550 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 3.2e-15 84.7 68 66.2
DCAR_019783 Daucus carota HOM05D005841 ORTHO05D007132 4.2e-15 84.3 65 64.6
Duzib128G0994 Durio zibethinus HOM05D005841 ORTHO05D007132 4.2e-15 84.3 67 64.2
PGSC0003DMG400023670 Solanum tuberosum HOM05D005841 ORTHO05D007132 4.2e-15 84.3 66 62.1
Potri.003G189400 Populus trichocarpa HOM05D005841 ORTHO05D007132 5.5e-15 84.0 66 65.2
Sed0002293 Sechium edule HOM05D005841 ORTHO05D007132 5.5e-15 84.0 66 66.7
Sed0011967 Sechium edule HOM05D005841 ORTHO05D007132 5.5e-15 84.0 66 62.1
Lsat_1_v5_gn_5_163601 Lactuca sativa HOM05D005841 ORTHO05D007132 7.2e-15 83.6 67 62.7
Nitab4.5_0004458g0010 Nicotiana tabacum HOM05D005841 ORTHO05D007132 7.2e-15 83.6 66 60.6
RcHm_v2.0_Chr1g0330051 Rosa chinensis HOM05D005841 ORTHO05D007132 7.2e-15 83.6 65 66.2
vmacro07900 Vaccinium macrocarpon HOM05D005841 ORTHO05D007132 7.2e-15 83.6 67 61.2
arahy.Tifrunner.gnm1.ann1.87YK44 Arachis hypogaea HOM05D005841 ORTHO05D007132 9.4e-15 83.2 66 63.6
Cc06_g15810 Coffea canephora HOM05D005841 ORTHO05D007132 9.4e-15 83.2 65 64.6
FvH4_7g04620 Fragaria vesca HOM05D005841 ORTHO05D007132 9.4e-15 83.2 65 66.2
MSTRG.19910 Avicennia marina HOM05D005841 ORTHO05D007132 1.2e-14 82.8 64 65.6
Gohir.A06G171000 Gossypium hirsutum HOM05D005841 ORTHO05D007132 1.2e-14 82.8 67 62.7
Gohir.D06G178900 Gossypium hirsutum HOM05D005841 ORTHO05D007132 1.2e-14 82.8 67 62.7
Potri.001G036400 Populus trichocarpa HOM05D005841 ORTHO05D007132 1.2e-14 82.8 66 63.6
Solyc10g080520.3 Solanum lycopersicum HOM05D005841 ORTHO05D007132 1.2e-14 82.8 66 62.1
Sopen10g031070 Solanum pennellii HOM05D005841 ORTHO05D007132 1.2e-14 82.8 66 62.1
Gorai.010G208800 Gossypium raimondii HOM05D005841 ORTHO05D007132 1.6e-14 82.4 67 62.7
unitig_699.g19444 Utricularia gibba HOM05D005841 ORTHO05D007132 1.6e-14 82.4 64 62.5
CANSAT56G0667 Cannabis sativa HOM05D005841 ORTHO05D007132 2.1e-14 82.0 66 65.2
AUR62039567 Chenopodium quinoa HOM05D005841 ORTHO05D007132 2.1e-14 82.0 65 61.5
CsaV3_5G029280 Cucumis sativus L. HOM05D005841 ORTHO05D007132 2.1e-14 82.0 66 63.6
Sabra01G0025200 Salix brachista HOM05D005841 ORTHO05D007132 2.1e-14 82.0 66 63.6
THA.LOC104824200 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 2.7e-14 81.6 64 68.8
Aqoxy3G04362 Aquilegia oxysepala HOM05D005841 ORTHO05D007132 3.6e-14 81.3 63 63.5
Carub.0005s2096 Capsella rubella HOM05D005841 ORTHO05D007132 3.6e-14 81.3 66 63.6
ECA248G0891 Erigeron canadensis HOM05D005841 ORTHO05D007132 4.7e-14 80.9 67 61.2
Thhalv10010421m.g Eutrema salsugineum HOM05D005841 ORTHO05D007132 4.7e-14 80.9 66 63.6
Lalb_Chr18g0048171 Lupinus albus HOM05D005841 ORTHO05D007132 6.1e-14 80.5 71 57.7
MD07G1085200 Malus domestica HOM05D005841 ORTHO05D007132 6.1e-14 80.5 66 60.6
Manes.04G153300 Manihot esculenta HOM05D005841 ORTHO05D007132 6.1e-14 80.5 66 62.1
Thecc.10G128400 Theobroma cacao HOM05D005841 ORTHO05D007132 6.1e-14 80.5 67 61.2
arahy.Tifrunner.gnm1.ann1.AX9XXP Arachis hypogaea HOM05D005841 ORTHO05D007132 8.0e-14 80.1 66 62.1
BcaB02g07739 Brassica carinata HOM05D005841 ORTHO05D007132 8.0e-14 80.1 66 63.6
MELO3C011778.2 Cucumis melo HOM05D005841 ORTHO05D007132 8.0e-14 80.1 66 63.6
Sp5g08040 Schrenkiella parvula HOM05D005841 ORTHO05D007132 8.0e-14 80.1 66 62.1
VMungo1080G1721 Vigna mungo HOM05D005841 ORTHO05D007132 8.0e-14 80.1 66 62.1
Lj3g0005753 Lotus japonicus HOM05D005841 ORTHO05D007132 1.0e-13 79.7 65 61.5
Hund07799 Selenicereus undatus HOM05D005841 ORTHO05D007132 1.0e-13 79.7 65 63.1
CARHR164270 Cardamine hirsuta HOM05D005841 ORTHO05D007132 1.4e-13 79.3 62 66.1
Prupe.2G051700 Prunus persica HOM05D005841 ORTHO05D007132 1.4e-13 79.3 66 60.6
TWI15G0221 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 1.4e-13 79.3 62 67.7
AL5G35420 Arabidopsis lyrata HOM05D005841 ORTHO05D007132 1.8e-13 79.0 66 62.1
Migut.J01841 Erythranthe guttata HOM05D005841 ORTHO05D007132 1.8e-13 79.0 65 61.5
SGA_v2.0_scaffold69G23059 Striga asiatica HOM05D005841 ORTHO05D007132 1.8e-13 79.0 61 63.9
HanXRQChr13g0390471 Helianthus annuus HOM05D005841 ORTHO05D007132 3.0e-13 78.2 67 58.2
BcaC08g44679 Brassica carinata HOM05D005841 ORTHO05D007132 4.0e-13 77.8 67 62.7
C06p22120 Brassica napus HOM05D005841 ORTHO05D007132 4.0e-13 77.8 67 62.7
BolC6t37399H Brassica oleracea HOM05D005841 ORTHO05D007132 4.0e-13 77.8 67 62.7
Oeu007758.1 Olea europaea HOM05D005841 ORTHO05D007132 4.0e-13 77.8 65 60.0
THA.LOC104809184 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 4.0e-13 77.8 66 60.6
TPR.G5121 Trifolium pratense HOM05D005841 ORTHO05D007132 5.2e-13 77.4 66 62.1
A07p22080 Brassica napus HOM05D005841 ORTHO05D007132 6.8e-13 77.0 67 61.2
BraA07t29891Z Brassica rapa HOM05D005841 ORTHO05D007132 6.8e-13 77.0 67 61.2
Glyma.06G313000 Glycine max HOM05D005841 ORTHO05D007132 6.8e-13 77.0 72 55.6
AT3G54360 Arabidopsis thaliana HOM05D005841 ORTHO05D007132 8.8e-13 76.6 62 62.9
Aa31sc488G20 Aethionema arabicum HOM05D005841 ORTHO05D007132 1.2e-12 76.3 62 64.5
BcaB01g00199 Brassica carinata HOM05D005841 ORTHO05D007132 1.5e-12 75.9 67 62.7
Medtr3g011510 Medicago truncatula HOM05D005841 ORTHO05D007132 2.0e-12 75.5 66 60.6
Glyma.04G125600 Glycine max HOM05D005841 ORTHO05D007132 2.6e-12 75.1 66 57.6
C08p29570 Brassica napus HOM05D005841 ORTHO05D007132 3.4e-12 74.7 63 63.5
BolC8t50563H Brassica oleracea HOM05D005841 ORTHO05D007132 3.4e-12 74.7 63 63.5
SEGI_26376 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 4.4e-12 74.3 71 57.7
A09p47340 Brassica napus HOM05D005841 ORTHO05D007132 5.7e-12 73.9 63 63.5
Phvul.005G012800 Phaseolus vulgaris HOM05D005841 ORTHO05D007132 5.7e-12 73.9 66 57.6
BraA09t40195Z Brassica rapa HOM05D005841 ORTHO05D007132 2.2e-11 72.0 63 61.9
HPP92_001714 Vanilla planifolia HOM05D005841 ORTHO05D007132 4.8e-11 70.9 50 70.0
TAR629G2175 Trochodendron aralioides HOM05D005841 ORTHO05D007132 1.4e-10 69.3 50 68.0
Mapoly0042s0033 Marchantia polymorpha HOM05D005841 ORTHO05D007132 3.1e-10 68.2 68 55.9
AUR62041651 Chenopodium quinoa HOM05D005841 ORTHO05D007132 4.1e-10 67.8 49 67.3
AagrBONN_evm.TU.Sc2ySwM_344.2135 Anthoceros agrestis HOM05D005841 ORTHO05D007132 1.6e-09 65.9 68 54.4
Pp3c4_17260 Physcomitrium patens HOM05D005841 ORTHO05D007132 1.6e-09 65.9 66 54.5
EL10Ac9g20941 Beta vulgaris HOM05D005841 ORTHO05D007132 2.7e-09 65.1 49 69.4
FAN06G1077 Fragaria x ananassa HOM05D005841 ORTHO05D007132 2.7e-09 65.1 50 66.0
FAN06G4202 Fragaria x ananassa HOM05D005841 ORTHO05D007132 2.7e-09 65.1 50 66.0
AUR62035532 Chenopodium quinoa HOM05D005841 ORTHO05D007132 3.5e-09 64.7 49 65.3
FAN01G0675 Fragaria x ananassa HOM05D005841 ORTHO05D007132 3.5e-09 64.7 50 66.0
FAN03G2595 Fragaria x ananassa HOM05D005841 ORTHO05D007132 3.5e-09 64.7 50 66.0
FAN10G3225 Fragaria x ananassa HOM05D005841 ORTHO05D007132 3.5e-09 64.7 50 66.0
FAN03G2434 Fragaria x ananassa HOM05D005841 ORTHO05D007132 5.9e-09 63.9 50 64.0
Ah.07g203740 Amaranthus hybridus HOM05D005841 ORTHO05D007132 2.2e-08 62.0 58 60.3
Sabra03G0139600 Salix brachista HOM05D005841 ORTHO05D007132 3.8e-08 61.2 53 62.3
Psat7g004640 Pisum sativum HOM05D000860 ORTHO05D005731 1.5e-07 59.3 52 59.6
Ca_26913_v3 Cicer arietinum L. HOM05D005841 ORTHO05D007132 2.5e-07 58.5 52 59.6
TPR.G5122 Trifolium pratense HOM05D003377 ORTHO05D004080 5.5e-07 57.4 49 61.2
SMO194G0025 Selaginella moellendorffii HOM05D005841 ORTHO05D007132 6.1e-06 53.9 62 50.0


User provided reference genes

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