Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 1.5e-127 459.5 237 100.0
SEGI_29847 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 2.5e-53 213.0 222 52.3
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 3.9e-46 189.1 235 47.7
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 1.9e-45 186.8 234 47.4
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 3.3e-45 186.0 227 48.0
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 1.2e-44 184.1 237 48.1
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 6.1e-44 181.8 236 47.9
QL02p011069 Quercus lobata HOM05D004951 ORTHO05D005840 8.0e-44 181.4 233 48.1
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 2.3e-43 179.9 236 46.6
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 4.0e-43 179.1 203 49.8
THA.LOC104809415 Tarenaya hassleriana HOM05D004951 ORTHO05D005840 1.2e-42 177.6 199 49.2
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 1.5e-42 177.2 240 47.1
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 1.5e-42 177.2 234 44.0
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 2.6e-42 176.4 201 49.3
Mapoly0115s0026 Marchantia polymorpha HOM05D004951 ORTHO05D005840 2.6e-42 176.4 218 45.4
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 5.8e-42 175.3 236 44.9
BcaC03g15607 Brassica carinata HOM05D004951 ORTHO05D005840 9.8e-42 174.5 198 47.0
BolC2t09323H Brassica oleracea HOM05D004951 ORTHO05D005840 9.8e-42 174.5 198 47.0
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 9.8e-42 174.5 201 52.2
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 9.8e-42 174.5 203 48.8
BraA02t07047Z Brassica rapa HOM05D004951 ORTHO05D005840 1.7e-41 173.7 198 47.0
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 1.7e-41 173.7 205 47.3
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 1.7e-41 173.7 239 45.2
HPP92_017328 Vanilla planifolia HOM05D004951 ORTHO05D005840 2.9e-41 172.9 229 45.4
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 3.7e-41 172.6 195 49.2
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 8.3e-41 171.4 233 45.1
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 8.3e-41 171.4 239 46.4
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 1.1e-40 171.0 234 44.4
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.1e-40 171.0 233 45.1
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.1e-40 171.0 233 45.1
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 1.1e-40 171.0 233 45.1
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.4e-40 170.6 233 45.1
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 1.9e-40 170.2 237 47.3
C02p33810 Brassica napus HOM05D004951 ORTHO05D005840 3.2e-40 169.5 191 47.1
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 4.1e-40 169.1 231 45.5
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 4.1e-40 169.1 236 44.9
A02p20120 Brassica napus HOM05D004951 ORTHO05D005840 5.4e-40 168.7 191 47.1
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 7.0e-40 168.3 230 45.2
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 2.0e-39 166.8 233 45.1
Thhalv10019169m.g Eutrema salsugineum HOM05D004951 ORTHO05D005840 2.0e-39 166.8 198 45.5
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 2.0e-39 166.8 233 44.6
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 2.7e-39 166.4 234 46.6
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 2.7e-39 166.4 191 48.7
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 2.7e-39 166.4 234 42.3
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 3.5e-39 166.0 230 43.0
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 3.5e-39 166.0 235 44.3
Sp5g30770 Schrenkiella parvula HOM05D004951 ORTHO05D005840 3.5e-39 166.0 191 46.1
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 3.5e-39 166.0 234 44.0
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 4.6e-39 165.6 185 46.5
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 6.0e-39 165.2 198 46.5
AL2G35650 Arabidopsis lyrata HOM05D004951 ORTHO05D005840 7.8e-39 164.9 198 46.5
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 7.8e-39 164.9 233 44.6
AagrBONN_evm.TU.Sc2ySwM_344.4244 Anthoceros agrestis HOM05D004951 ORTHO05D005840 1.3e-38 164.1 184 48.4
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 1.3e-38 164.1 236 44.5
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 1.3e-38 164.1 235 44.3
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 1.7e-38 163.7 239 45.6
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 1.7e-38 163.7 230 43.0
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 2.3e-38 163.3 239 45.6
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 2.3e-38 163.3 195 47.2
CARHR069060 Cardamine hirsuta HOM05D004951 ORTHO05D005840 5.0e-38 162.2 198 46.0
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 5.0e-38 162.2 235 43.4
Lsat_1_v5_gn_8_80440 Lactuca sativa HOM05D004951 ORTHO05D005840 5.0e-38 162.2 236 43.2
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 6.6e-38 161.8 234 43.2
TPR.G15148 Trifolium pratense HOM05D004951 ORTHO05D005840 8.6e-38 161.4 237 44.3
arahy.Tifrunner.gnm1.ann1.T7R5G6 Arachis hypogaea HOM05D004951 ORTHO05D005840 1.1e-37 161.0 233 41.2
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.1e-37 161.0 215 46.0
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 1.1e-37 161.0 219 42.9
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 1.1e-37 161.0 233 42.9
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 1.1e-37 161.0 235 43.0
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 1.5e-37 160.6 233 42.9
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 1.9e-37 160.2 198 49.0
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 1.9e-37 160.2 252 39.7
arahy.Tifrunner.gnm1.ann1.5C4441 Arachis hypogaea HOM05D004951 ORTHO05D005840 2.5e-37 159.8 233 42.1
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 2.5e-37 159.8 181 48.1
Glyma.09G246500 Glycine max HOM05D004951 ORTHO05D005840 3.3e-37 159.5 233 43.3
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 3.3e-37 159.5 234 41.5
arahy.Tifrunner.gnm1.ann1.1I2LZG Arachis hypogaea HOM05D004951 ORTHO05D005840 4.3e-37 159.1 233 41.6
BcaC08g47055 Brassica carinata HOM05D004951 ORTHO05D005840 4.3e-37 159.1 199 45.2
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 7.3e-37 158.3 181 48.1
Cc10_g01890 Coffea canephora HOM05D004951 ORTHO05D005840 9.5e-37 157.9 237 42.6
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 1.6e-36 157.1 230 44.3
ATR0585G020 Amborella trichopoda HOM05D004951 ORTHO05D005840 4.7e-36 155.6 88 90.9
Nn1g08637 Nelumbo nucifera HOM05D004951 ORTHO05D005840 8.0e-36 154.8 154 53.9
Eucgr.F02088 Eucalyptus grandis HOM05D004951 ORTHO05D005840 1.8e-35 153.7 233 42.1
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 2.3e-35 153.3 185 47.6
SGA_v2.0_scaffold11G05895 Striga asiatica HOM05D004951 ORTHO05D005840 4.0e-35 152.5 234 41.9
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 5.2e-35 152.1 185 44.9
AagrBONN_evm.TU.Sc2ySwM_368.3390 Anthoceros agrestis HOM05D004951 ORTHO05D005840 8.9e-35 151.4 247 40.9
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 8.9e-35 151.4 235 39.6
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 1.2e-34 151.0 234 41.5
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 1.5e-34 150.6 230 40.0
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 2.6e-34 149.8 232 41.4
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 3.4e-34 149.4 236 41.5
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 4.4e-34 149.1 185 43.8
Medtr7g080860 Medicago truncatula HOM05D004951 ORTHO05D005840 4.4e-34 149.1 234 43.2
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 9.8e-34 147.9 232 40.9
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 9.8e-34 147.9 232 42.2
TAR625G0428 Trochodendron aralioides HOM05D004951 ORTHO05D005840 1.3e-33 147.5 199 46.2
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 1.7e-33 147.1 204 47.1
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 4.9e-33 145.6 201 43.8
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 4.9e-33 145.6 201 43.8
Lj1g0015493 Lotus japonicus HOM05D004951 ORTHO05D005840 4.9e-33 145.6 234 41.5
Lalb_Chr03g0040521 Lupinus albus HOM05D004951 ORTHO05D005840 4.9e-33 145.6 233 40.8
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 4.9e-33 145.6 230 43.0
SMO356G0424 Selaginella moellendorffii HOM05D004951 ORTHO05D005840 4.9e-33 145.6 184 46.2
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 6.4e-33 145.2 232 40.9
Peaxi162Scf00186g00023 Petunia axillaris HOM05D004951 ORTHO05D005840 8.3e-33 144.8 207 41.1
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 1.1e-32 144.4 232 40.5
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.4e-32 144.1 201 42.3
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.4e-32 144.1 179 45.8
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 1.9e-32 143.7 234 39.3
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 3.2e-32 142.9 251 40.6
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 5.4e-32 142.1 231 41.1
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 5.4e-32 142.1 201 41.3
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 7.1e-32 141.7 223 41.3
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 1.2e-31 141.0 163 47.9
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 2.7e-31 139.8 182 43.4
SalBow8G2430 Salvia bowleyana HOM05D004951 ORTHO05D005840 4.6e-31 139.0 230 41.7
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 6.0e-31 138.7 210 43.8
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 1.3e-30 137.5 232 39.2
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.7e-30 137.1 219 40.6
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 4.3e-29 132.5 200 39.0
Actinidia28598 Actinidia chinensis HOM05D004951 ORTHO05D005840 7.3e-29 131.7 235 40.4
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 2.1e-28 130.2 251 35.5
Gohir.A02G093500 Gossypium hirsutum HOM05D004951 ORTHO05D005840 3.6e-28 129.4 144 48.6
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 1.1e-27 127.9 155 47.1
MBI05_g38365_MAGBIO Magnolia biondii HOM05D004951 ORTHO05D005840 1.1e-27 127.9 233 38.2
Oeu024522.1 Olea europaea HOM05D004951 ORTHO05D005840 1.1e-27 127.9 152 47.4
Os06g0168400 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 1.1e-27 127.9 154 42.9
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 1.8e-27 127.1 254 36.2
Lj4A795G31 Lonicera japonica HOM05D004951 ORTHO05D005840 5.2e-27 125.6 123 54.5
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 4.4e-26 122.5 263 34.6
unitig_8.g4914 Utricularia gibba HOM05D004951 ORTHO05D005840 1.1e-24 117.9 199 36.2
ATR0585G124 Amborella trichopoda HOM05D004951 ORTHO05D005840 1.0e-22 111.3 57 89.5
SEGI_15858 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 7.3e-21 105.1 88 60.2
CBR_g74690 Chara braunii HOM05D004951 ORTHO05D005840 9.6e-21 104.8 139 39.6
Cre02.g086750 Chlamydomonas reinhardtii HOM05D004951 ORTHO05D005840 6.2e-20 102.1 178 34.3
Lalb_Chr01g0021631 Lupinus albus HOM05D004951 ORTHO05D005840 4.0e-19 99.4 231 32.0
CAN.G230.10 Capsicum annuum HOM05D004951 ORTHO05D005840 8.9e-19 98.2 125 46.4
MCO12G415 Micromonas commoda HOM05D004951 ORTHO05D005840 8.4e-17 91.7 161 33.5
Sed0021847 Sechium edule HOM05D004951 ORTHO05D005840 4.6e-15 85.9 145 37.9
SEGI_28115 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 6.0e-15 85.5 80 56.2
Hma1.2p1_2299F.1_g319190 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 4.3e-13 79.3 77 58.4
PGSC0003DMG400019052 Solanum tuberosum HOM05D004951 ORTHO05D005840 3.6e-12 76.3 118 39.8


User provided reference genes

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