Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0068G026 Amborella trichopoda HOM05D007561 ORTHO05D007661 0.0e+00 1110.1 679 100.0
TAR561G0001 Trochodendron aralioides HOM05D007561 ORTHO05D007661 9.0e-72 275.8 499 41.1
Potri.005G090000 Populus trichocarpa HOM05D007561 ORTHO05D007661 1.8e-59 235.0 542 38.2
Dinv37052 Davidia involucrata HOM05D007561 ORTHO05D007661 2.3e-59 234.6 504 37.1
PSO732G0159 Papaver somniferum HOM05D007561 ORTHO05D007661 1.5e-58 231.9 506 37.9
PSO675G2416 Papaver somniferum HOM05D007561 ORTHO05D007661 2.5e-58 231.1 545 36.1
Ciclev10013885m.g Citrus clementina HOM05D007561 ORTHO05D007661 2.4e-56 224.6 516 37.0
Manes.04G066400 Manihot esculenta HOM05D007561 ORTHO05D007661 2.6e-55 221.1 490 37.8
Oeu020265.1 Olea europaea HOM05D007561 ORTHO05D007661 2.6e-55 221.1 498 36.5
Aqoxy2G00670 Aquilegia oxysepala HOM05D007561 ORTHO05D007661 3.4e-55 220.7 572 36.4
TWI77G0394 Tripterygium wilfordii HOM05D007561 ORTHO05D007661 3.8e-54 217.2 492 39.2
Sabra05G0074100 Salix brachista HOM05D007561 ORTHO05D007661 9.3e-53 212.6 484 38.6
TWI74G0078 Tripterygium wilfordii HOM05D007561 ORTHO05D007661 3.5e-52 210.7 490 38.0
Potri.007G074056 Populus trichocarpa HOM05D007561 ORTHO05D007661 3.9e-51 207.2 502 36.5
Nitab4.5_0000613g0170 Nicotiana tabacum HOM05D007561 ORTHO05D007661 1.8e-48 198.4 489 36.2
Thecc.05G190500 Theobroma cacao HOM05D007561 ORTHO05D007661 1.5e-47 195.3 501 34.9
PGSC0003DMG400028120 Solanum tuberosum HOM05D007561 ORTHO05D007661 2.0e-47 194.9 548 33.8
Migut.J01597 Erythranthe guttata HOM05D007561 ORTHO05D007661 5.9e-47 193.4 514 33.9
Sopen10g031840 Solanum pennellii HOM05D007561 ORTHO05D007661 5.9e-47 193.4 551 33.8
CiPaw.09G161100 Carya illinoinensis HOM05D007561 ORTHO05D007661 1.0e-46 192.6 585 34.7
SalBow6G1989 Salvia bowleyana HOM05D007561 ORTHO05D007661 1.7e-46 191.8 480 36.7
Nitab4.5_0000811g0050 Nicotiana tabacum HOM05D007561 ORTHO05D007661 2.2e-46 191.4 484 33.9
VMungo1383G3023 Vigna mungo HOM05D007561 ORTHO05D007661 2.2e-46 191.4 520 34.4
Lj2A414T29 Lonicera japonica HOM05D007561 ORTHO05D007661 2.9e-46 191.0 483 34.4
RhsimUnG0021900 Rhododendron simsii HOM05D007561 ORTHO05D007661 6.5e-46 189.9 439 33.7
SalBow6G6384 Salvia bowleyana HOM05D007561 ORTHO05D007661 6.5e-46 189.9 480 36.5
Solyc10g081340.1 Solanum lycopersicum HOM05D007561 ORTHO05D007661 1.9e-45 188.3 492 35.2
HPP92_021156 Vanilla planifolia HOM05D007561 ORTHO05D007661 5.5e-45 186.8 541 35.7
Actinidia18379 Actinidia chinensis HOM05D007561 ORTHO05D007661 1.2e-44 185.7 544 34.6
Atru.chr8.931 Acer truncatum HOM05D007561 ORTHO05D007661 2.1e-44 184.9 514 35.0
DCAR_009109 Daucus carota HOM05D007561 ORTHO05D007661 2.1e-44 184.9 495 34.1
Duzib177G0099 Durio zibethinus HOM05D007561 ORTHO05D007661 2.1e-44 184.9 495 35.2
MSTRG.19744 Avicennia marina HOM05D007561 ORTHO05D007661 6.1e-44 183.3 489 33.9
Phvul.001G109100 Phaseolus vulgaris HOM05D007561 ORTHO05D007661 6.1e-44 183.3 528 34.7
Cpa.g.sc33.185 Carica papaya HOM05D007561 ORTHO05D007661 7.9e-44 183.0 493 35.3
CAN.G128.129 Capsicum annuum HOM05D007561 ORTHO05D007661 1.3e-43 182.2 488 35.7
SGA_v2.0_scaffold66G22349 Striga asiatica HOM05D007561 ORTHO05D007661 3.0e-43 181.0 409 38.9
MSTRG.6258 Avicennia marina HOM05D007561 ORTHO05D007661 3.9e-43 180.6 511 34.2
Glyma.19G123300 Glycine max HOM05D007561 ORTHO05D007661 8.7e-43 179.5 533 33.0
Gorai.012G026500 Gossypium raimondii HOM05D007561 ORTHO05D007661 1.9e-42 178.3 494 34.4
Medtr7g088200 Medicago truncatula HOM05D007561 ORTHO05D007661 2.8e-41 174.5 508 33.1
Sabra07G0062300 Salix brachista HOM05D007561 ORTHO05D007661 1.4e-40 172.2 412 38.3
Glyma.03G118900 Glycine max HOM05D007561 ORTHO05D007661 1.8e-40 171.8 514 31.9
Ca_08339_v3 Cicer arietinum L. HOM05D007561 ORTHO05D007661 1.2e-39 169.1 506 34.0
Psat3g083040 Pisum sativum HOM05D007561 ORTHO05D007661 2.6e-39 167.9 505 33.5
PGR042G3351 Punica granatum HOM05D007561 ORTHO05D007661 5.9e-39 166.8 528 32.6
Lj1g0025432 Lotus japonicus HOM05D007561 ORTHO05D007661 5.0e-38 163.7 500 34.2
Peaxi162Scf00575g00079 Petunia axillaris HOM05D007561 ORTHO05D007661 5.0e-38 163.7 483 33.1
Gohir.A05G393000 Gossypium hirsutum HOM05D007561 ORTHO05D007661 9.4e-37 159.5 446 34.3
GSVIVG01029894001 Vitis vinifera HOM05D007561 ORTHO05D007661 9.4e-37 159.5 412 32.3
ClCG10G016860 Citrullus lanatus HOM05D007561 ORTHO05D007661 2.7e-36 157.9 530 33.0
Sed0023829 Sechium edule HOM05D007561 ORTHO05D007661 2.7e-36 157.9 518 31.7
MELO3C009692.2 Cucumis melo HOM05D007561 ORTHO05D007661 6.1e-36 156.8 529 32.1
CsaV3_3G039500 Cucumis sativus L. HOM05D007561 ORTHO05D007661 7.9e-36 156.4 539 31.5
Gohir.D04G022850 Gossypium hirsutum HOM05D007561 ORTHO05D007661 7.9e-36 156.4 448 33.3
AUR62020949 Chenopodium quinoa HOM05D007561 ORTHO05D007661 2.3e-35 154.8 548 31.8
Gorai.013G132100 Gossypium raimondii HOM05D007561 ORTHO05D007661 3.9e-35 154.1 493 31.0
Gohir.A13G114700 Gossypium hirsutum HOM05D007561 ORTHO05D007661 8.8e-35 152.9 507 31.4
PGR042G3883 Punica granatum HOM05D007561 ORTHO05D007661 5.7e-34 150.2 431 34.8
Gohir.D13G117500 Gossypium hirsutum HOM05D007561 ORTHO05D007661 7.4e-34 149.8 497 31.4
Eucgr.A02170 Eucalyptus grandis HOM05D007561 ORTHO05D007661 2.2e-33 148.3 530 30.2
Sed0024594 Sechium edule HOM05D007561 ORTHO05D007661 1.4e-32 145.6 521 30.9
Ah.04g149900 Amaranthus hybridus HOM05D007561 ORTHO05D007661 1.8e-32 145.2 538 32.5
AUR62018475 Chenopodium quinoa HOM05D007561 ORTHO05D007661 4.1e-32 144.1 521 32.4
SGA_v2.0_scaffold69G23211 Striga asiatica HOM05D007561 ORTHO05D007661 2.6e-31 141.4 481 32.6
Sc13g0000670 Simmondsia chinensis HOM05D007561 ORTHO05D007661 3.4e-31 141.0 479 32.2
FAN07G2764 Fragaria x ananassa HOM05D007561 ORTHO05D007661 5.0e-30 137.1 568 29.4
PSO339G6289 Papaver somniferum HOM05D007561 ORTHO05D007661 1.9e-29 135.2 526 30.8
Lalb_Chr22g0358291 Lupinus albus HOM05D007561 ORTHO05D007661 9.4e-29 132.9 516 28.5
FvH4_4g10470 Fragaria vesca HOM05D007561 ORTHO05D007661 2.7e-28 131.3 569 29.3
PSO384G3070 Papaver somniferum HOM05D007561 ORTHO05D007661 7.9e-28 129.8 527 30.9
RcHm_v2.0_Chr3g0495011 Rosa chinensis HOM05D007561 ORTHO05D007661 7.9e-28 129.8 546 29.1
FAN12G0994 Fragaria x ananassa HOM05D007561 ORTHO05D007661 1.4e-27 129.0 569 29.2
FAN12G2197 Fragaria x ananassa HOM05D007561 ORTHO05D007661 3.0e-27 127.9 603 29.2
QL02p091854 Quercus lobata HOM05D007561 ORTHO05D007661 3.9e-27 127.5 407 33.4
SEGI_17426 Sequoiadendron giganteum HOM05D007561 ORTHO05D007661 3.9e-27 127.5 453 29.4
FAN17G1891 Fragaria x ananassa HOM05D007561 ORTHO05D007661 5.1e-27 127.1 566 29.2
FAN22G1656 Fragaria x ananassa HOM05D007561 ORTHO05D007661 5.1e-27 127.1 571 29.4
Hma1.2p1_1686F.1_g297500 Hydrangea macrophylla HOM05D007561 ORTHO05D007661 5.7e-26 123.6 458 31.0
CANSAT78G1013 Cannabis sativa HOM05D007561 ORTHO05D007661 3.1e-24 117.9 543 28.0
COL.COLO4_05647 Corchorus olitorius HOM05D007561 ORTHO05D007661 4.5e-23 114.0 530 33.6
Haze_20355 Corylus avellana HOM05D007561 ORTHO05D007661 1.9e-21 108.6 501 27.7
MBI15_g01650_MAGBIO Magnolia biondii HOM05D007561 ORTHO05D007661 9.4e-21 106.3 91 59.3
SEGI_34192 Sequoiadendron giganteum HOM05D035901 ORTHO05D007661 2.7e-20 104.8 572 26.4
PGR142G0684 Punica granatum HOM05D007561 ORTHO05D007661 2.6e-18 98.2 385 31.2
Cfa019892 Carpinus fangiana HOM05D007561 ORTHO05D007661 3.3e-18 97.8 476 26.5
MD12G1110900 Malus domestica HOM05D007561 ORTHO05D007661 3.3e-18 97.8 558 28.0
unitig_899.g15656 Utricularia gibba HOM05D007561 ORTHO05D007661 4.4e-18 97.4 252 36.5
MBI14_g08053_MAGBIO Magnolia biondii HOM05D007561 ORTHO05D007661 1.7e-17 95.5 94 58.5
TPR.G23681 Trifolium pratense HOM05D007561 ORTHO05D007661 1.7e-17 95.5 300 32.7
TAR629G0269 Trochodendron aralioides HOM05D002654 ORTHO05D002430 1.4e-16 92.4 421 28.5
vmacro01254 Vaccinium macrocarpon HOM05D002654 ORTHO05D002430 5.9e-15 87.0 514 28.0
MBI05_g08278_MAGBIO Magnolia biondii HOM05D002654 ORTHO05D002430 1.9e-13 82.0 546 26.6
Nn4g23142 Nelumbo nucifera HOM05D002654 ORTHO05D002430 2.5e-13 81.6 516 25.0
SEGI_32896 Sequoiadendron giganteum HOM05D000006 ORTHO05D007661 4.2e-13 80.9 456 28.3
Nn3g17221 Nelumbo nucifera HOM05D002654 ORTHO05D002430 5.5e-13 80.5 488 26.6
Rhsim12G0063400 Rhododendron simsii HOM05D002654 ORTHO05D002430 5.5e-13 80.5 489 26.8
Dinv34160 Davidia involucrata HOM05D002654 ORTHO05D002430 1.2e-12 79.3 490 24.3
Dinv38698 Davidia involucrata HOM05D002654 ORTHO05D002430 3.6e-12 77.8 486 23.7
THA.LOC104816415 Tarenaya hassleriana HOM05D011214 ORTHO05D007661 4.7e-12 77.4 471 27.2
TAR371G1053 Trochodendron aralioides HOM05D002654 ORTHO05D002430 4.7e-12 77.4 432 26.9
CiPaw.05G136200 Carya illinoinensis HOM05D002654 ORTHO05D002430 1.0e-11 76.3 494 27.1
BolC9t60006H Brassica oleracea HOM05D011214 ORTHO05D007661 6.8e-11 73.6 488 25.8
Sp6g38560 Schrenkiella parvula HOM05D011214 ORTHO05D007661 6.8e-11 73.6 501 26.7
Thhalv10015710m.g Eutrema salsugineum HOM05D011214 ORTHO05D007661 1.2e-10 72.8 475 26.7
Hma1.2p1_0795F.1_g218740 Hydrangea macrophylla HOM05D002654 ORTHO05D002430 1.2e-10 72.8 512 25.2
Zm00001eb333260 Zea mays HOM05D007561 ORTHO05D007661 1.2e-10 72.8 447 32.0
CSS0046015 Camellia sinensis var. sinensis HOM05D002654 ORTHO05D002430 1.5e-10 72.4 485 26.4
CARHR209070 Cardamine hirsuta HOM05D011214 ORTHO05D007661 2.0e-10 72.0 473 27.7
Migut.K00204 Erythranthe guttata HOM05D007561 ORTHO05D007661 2.0e-10 72.0 421 28.5
CDE02G3247 Ceratophyllum demersum HOM05D044834 ORTHO05D007661 2.6e-10 71.6 276 27.9
C09p72660 Brassica napus HOM05D011214 ORTHO05D007661 3.4e-10 71.2 488 25.6
Medtr5g040340 Medicago truncatula HOM05D002654 ORTHO05D002430 3.4e-10 71.2 418 23.7
MBI02_g39064_MAGBIO Magnolia biondii HOM05D002654 ORTHO05D002430 4.4e-10 70.9 432 27.5
CSS0017824 Camellia sinensis var. sinensis HOM05D002654 ORTHO05D002430 7.5e-10 70.1 485 26.2
Duzib251G0139 Durio zibethinus HOM05D002654 ORTHO05D002430 2.2e-09 68.6 490 26.9
COL.COLO4_23006 Corchorus olitorius HOM05D002654 ORTHO05D002430 2.8e-09 68.2 500 23.8
Dinv19955 Davidia involucrata HOM05D000087 ORTHO05D000439 2.8e-09 68.2 485 25.4
Nitab4.5_0000703g0220 Nicotiana tabacum HOM05D002654 ORTHO05D002430 2.8e-09 68.2 507 25.0
Prupe.7G023100 Prunus persica HOM05D007561 ORTHO05D007661 3.7e-09 67.8 423 27.9
CDE04G1501 Ceratophyllum demersum HOM05D044834 ORTHO05D007661 4.8e-09 67.4 352 25.3
Sabra15G0087900 Salix brachista HOM05D002654 ORTHO05D002430 4.8e-09 67.4 481 24.1
Ciclev10031315m.g Citrus clementina HOM05D002654 ORTHO05D002430 6.3e-09 67.0 501 24.6
AT5G04190 Arabidopsis thaliana HOM05D011214 ORTHO05D007661 8.3e-09 66.6 476 27.7
DCAR_024160 Daucus carota HOM05D002654 ORTHO05D002430 1.1e-08 66.2 423 25.5
PSO339G6607 Papaver somniferum HOM05D002654 ORTHO05D002430 1.1e-08 66.2 496 24.6
TPR.G37132 Trifolium pratense HOM05D002654 ORTHO05D002430 1.1e-08 66.2 401 24.4
Gorai.005G141100 Gossypium raimondii HOM05D002654 ORTHO05D002430 1.4e-08 65.9 502 26.5
PSO017G0875 Papaver somniferum HOM05D002654 ORTHO05D002430 1.4e-08 65.9 501 25.9
Potri.015G062600 Populus trichocarpa HOM05D002654 ORTHO05D002430 3.1e-08 64.7 482 25.5
Ca_04788_v3 Cicer arietinum L. HOM05D002654 ORTHO05D002430 4.1e-08 64.3 429 24.2
Peaxi162Scf00541g00022 Petunia axillaris HOM05D002654 ORTHO05D002430 4.1e-08 64.3 489 25.6
CDE04G0982 Ceratophyllum demersum HOM05D007561 ORTHO05D007661 5.4e-08 63.9 317 27.4
Glyma.02G106800 Glycine max HOM05D002654 ORTHO05D002430 5.4e-08 63.9 488 23.6
AL6G13810 Arabidopsis lyrata HOM05D011214 ORTHO05D007661 7.0e-08 63.5 489 26.8
A10p31950 Brassica napus HOM05D011214 ORTHO05D007661 7.0e-08 63.5 488 26.2
Lalb_Chr17g0340621 Lupinus albus HOM05D002654 ORTHO05D002430 7.0e-08 63.5 479 24.8
BraA10t45239Z Brassica rapa HOM05D011214 ORTHO05D007661 9.1e-08 63.2 492 26.4
Lalb_Chr10g0098231 Lupinus albus HOM05D002654 ORTHO05D002430 9.1e-08 63.2 508 25.0
Carub.0006s0314 Capsella rubella HOM05D011214 ORTHO05D007661 1.2e-07 62.8 413 27.8
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 1.2e-07 62.8 313 28.4
Glyma.01G046600 Glycine max HOM05D002654 ORTHO05D002430 1.2e-07 62.8 495 25.3
Lj2g0004439 Lotus japonicus HOM05D002654 ORTHO05D002430 3.5e-07 61.2 492 24.6
QL10p016685 Quercus lobata HOM05D002654 ORTHO05D002430 3.5e-07 61.2 493 24.9
CDE09G0510 Ceratophyllum demersum HOM05D044076 ORTHO05D007661 4.5e-07 60.8 136 34.6
PGSC0003DMG400031263 Solanum tuberosum HOM05D002654 ORTHO05D002430 5.9e-07 60.5 506 23.1
Cfa008990 Carpinus fangiana HOM05D002654 ORTHO05D002430 1.0e-06 59.7 494 24.7
Oeu054885.1 Olea europaea HOM05D002654 ORTHO05D002430 1.0e-06 59.7 343 25.4
Manes.05G100700 Manihot esculenta HOM05D002654 ORTHO05D002430 1.3e-06 59.3 490 25.3
SEGI_25893 Sequoiadendron giganteum HOM05D035901 ORTHO05D007661 1.3e-06 59.3 434 25.1
Thecc.03G084900 Theobroma cacao HOM05D002654 ORTHO05D002430 1.3e-06 59.3 494 24.3
VMungo0464G1428 Vigna mungo HOM05D025134 ORTHO05D020753 1.3e-06 59.3 357 27.5
BcaB05g21770 Brassica carinata HOM05D011214 ORTHO05D007661 1.7e-06 58.9 409 26.2
BcaC06g32122 Brassica carinata HOM05D011214 ORTHO05D007661 1.7e-06 58.9 494 25.7
BcaC06g32123 Brassica carinata HOM05D011214 ORTHO05D007661 2.9e-06 58.2 480 26.0
CiPaw.06G084100 Carya illinoinensis HOM05D002654 ORTHO05D002430 2.9e-06 58.2 433 27.3
CDE08G0002 Ceratophyllum demersum HOM05D044076 ORTHO05D007661 3.8e-06 57.8 135 31.9
Nitab4.5_0007501g0020 Nicotiana tabacum HOM05D002654 ORTHO05D002430 3.8e-06 57.8 433 24.7
Manes.01G186300 Manihot esculenta HOM05D002654 ORTHO05D002430 5.0e-06 57.4 415 26.0
CAN.G837.8 Capsicum annuum HOM05D002654 ORTHO05D002430 6.5e-06 57.0 183 32.2
Phvul.002G086000 Phaseolus vulgaris HOM05D002654 ORTHO05D002430 6.5e-06 57.0 430 24.2
Thecc.02G347200 Theobroma cacao HOM05D002654 ORTHO05D002430 8.5e-06 56.6 492 23.2


User provided reference genes

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