Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 1.7e-310 1068.5 550 100.0
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 4.3e-189 665.2 542 61.6
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 3.3e-181 639.0 549 59.4
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 4.9e-177 625.2 539 58.8
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 9.2e-176 620.9 532 59.2
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 6.0e-175 618.2 538 58.2
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 7.8e-175 617.8 508 60.2
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 1.2e-172 610.5 526 58.2
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 3.6e-172 609.0 539 57.0
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 3.6e-172 609.0 539 57.0
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 1.1e-171 607.4 516 58.3
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 1.4e-171 607.1 538 57.4
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 1.8e-171 606.7 516 58.3
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 2.3e-171 606.3 537 58.3
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 3.1e-171 605.9 540 57.0
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 4.0e-171 605.5 538 57.4
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 1.9e-168 596.7 538 56.3
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 2.4e-168 596.3 494 59.9
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 7.1e-168 594.7 489 60.5
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 6.0e-167 591.7 490 60.2
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 7.8e-167 591.3 507 58.4
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 3.0e-166 589.3 507 59.4
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 1.5e-165 587.0 491 58.7
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 3.3e-165 585.9 542 55.7
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 7.3e-165 584.7 540 55.4
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 1.1e-163 580.9 495 58.0
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 1.4e-163 580.5 511 56.4
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 2.4e-163 579.7 550 53.8
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 2.4e-163 579.7 504 58.1
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 6.8e-163 578.2 518 55.8
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 6.8e-163 578.2 504 57.3
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 2.0e-162 576.6 514 58.2
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 2.0e-162 576.6 551 54.8
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 2.6e-162 576.2 504 57.1
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 4.4e-162 575.5 491 59.1
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 7.6e-162 574.7 552 54.5
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 9.9e-162 574.3 487 58.9
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 1.7e-161 573.5 502 56.8
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 1.7e-161 573.5 550 54.4
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 2.2e-161 573.2 508 57.1
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 2.2e-161 573.2 539 53.2
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 2.9e-161 572.8 504 57.1
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 3.8e-161 572.4 501 56.3
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 4.9e-161 572.0 497 57.9
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 4.9e-161 572.0 542 53.9
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 6.4e-161 571.6 492 57.5
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 8.4e-161 571.2 550 52.5
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 1.1e-160 570.9 504 57.1
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 9.2e-160 567.8 541 54.0
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 1.2e-159 567.4 504 56.5
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 1.7e-158 563.5 552 53.4
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 3.9e-158 562.4 497 55.9
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 3.9e-158 562.4 512 57.0
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 6.6e-158 561.6 552 52.2
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 8.7e-158 561.2 541 53.2
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.1e-157 560.8 489 57.7
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.9e-157 560.1 489 57.7
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.5e-157 559.7 489 57.7
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 9.6e-157 557.8 489 57.3
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.1e-156 556.6 489 57.5
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 2.8e-156 556.2 520 55.0
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 3.6e-156 555.8 546 51.6
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 3.6e-156 555.8 522 53.6
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 1.1e-155 554.3 552 52.9
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 1.4e-155 553.9 516 54.3
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 9.0e-155 551.2 490 56.9
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 1.2e-154 550.8 538 51.9
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 3.4e-154 549.3 494 56.5
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 3.4e-154 549.3 512 53.9
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 5.8e-154 548.5 500 54.2
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 1.3e-153 547.4 500 56.4
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 3.8e-153 545.8 542 52.6
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 4.9e-153 545.4 542 52.2
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 6.4e-153 545.0 485 54.4
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 8.4e-153 544.7 521 52.0
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 1.1e-152 544.3 505 54.1
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 1.4e-152 543.9 501 53.9
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 1.0e-150 537.7 546 51.5
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 1.7e-150 537.0 542 50.7
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 1.7e-150 537.0 542 51.7
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 3.9e-150 535.8 542 50.7
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 3.3e-149 532.7 542 50.4
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 7.3e-149 531.6 536 50.2
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 7.3e-149 531.6 553 51.5
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 4.8e-148 528.9 505 53.1
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 4.0e-147 525.8 514 53.5
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 9.0e-147 524.6 511 51.7
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 3.4e-146 522.7 540 50.6
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 2.9e-145 519.6 521 50.5
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 8.4e-145 518.1 493 52.7
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 1.9e-144 516.9 522 51.3
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 7.9e-143 511.5 525 50.7
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 1.1e-141 507.7 503 52.3
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 4.3e-141 505.8 539 50.3
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 2.4e-139 500.0 552 49.6
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 1.2e-138 497.7 493 52.3
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 1.9e-136 490.3 513 49.7
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 5.6e-133 478.8 569 45.2
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 7.6e-130 468.4 381 60.6
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 2.3e-126 456.8 547 46.8
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 5.1e-126 455.7 498 49.0
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 1.1e-123 448.0 498 48.0
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 1.4e-123 447.6 551 48.1
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 9.7e-117 424.9 410 53.4
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 9.7e-117 424.9 425 52.9
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 1.7e-113 414.1 489 48.1
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 2.1e-111 407.1 352 59.4
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 1.5e-109 401.0 426 48.1
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 4.1e-107 392.9 484 42.8
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 4.2e-104 382.9 505 40.6
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 1.0e-102 378.3 519 39.9
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 2.0e-101 374.0 356 53.4
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 7.0e-99 365.5 320 59.1
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 2.3e-94 350.5 495 40.4
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 3.7e-92 343.2 513 40.9
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 7.7e-90 335.5 421 45.1
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 3.8e-89 333.2 316 55.1
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 3.6e-87 326.6 416 44.2
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 6.3e-76 289.3 420 40.5
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 1.2e-71 275.0 345 45.5
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 1.7e-68 264.6 490 36.7
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 4.9e-68 263.1 490 36.7
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 1.5e-61 241.5 231 48.9
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 6.4e-52 209.5 204 55.4
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 1.2e-50 205.3 204 54.9
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 5.1e-49 199.9 276 43.5
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 1.9e-40 171.4 208 40.9
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 2.6e-37 161.0 110 70.9
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 5.8e-37 159.8 587 24.2
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 1.9e-35 154.8 518 29.2
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 1.6e-34 151.8 118 63.6
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 2.7e-34 151.0 179 49.2
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.1e-30 139.0 105 62.9
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 2.4e-30 137.9 112 60.7
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 1.3e-28 132.1 496 25.2
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 2.2e-28 131.3 221 39.8
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 5.4e-27 126.7 196 39.8
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.2e-26 125.6 104 57.7
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 4.6e-26 123.6 97 60.8
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 6.0e-26 123.2 115 53.9
A09p50030 Brassica napus HOM05D001925 ORTHO05D005701 3.3e-24 117.5 103 56.3
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 5.6e-24 116.7 89 65.2
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 1.0e-20 105.9 87 60.9
MBI04_g47116_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 1.6e-15 88.6 268 27.2
Cfa026360 Carpinus fangiana HOM05D001925 ORTHO05D005701 1.4e-11 75.5 521 22.8
BcaC07g40074 Brassica carinata HOM05D001925 ORTHO05D005701 3.0e-09 67.8 80 47.5
Cre07.g355200 Chlamydomonas reinhardtii HOM05D001925 ORTHO05D005701 3.0e-09 67.8 451 20.8
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 1.9e-08 65.1 124 33.9
Thhalv10027287m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 3.3e-08 64.3 90 34.4


User provided reference genes

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