Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0064G106 Amborella trichopoda HOM05D005220 ORTHO05D006082 4.2e-198 694.5 352 100.0
ATR0681G067 Amborella trichopoda HOM05D005220 ORTHO05D006082 1.5e-75 287.3 327 49.5
TAR622G0939 Trochodendron aralioides HOM05D005220 ORTHO05D006082 2.3e-47 193.7 365 41.6
MBI16_g09907_MAGBIO Magnolia biondii HOM05D005220 ORTHO05D006082 1.2e-43 181.4 317 39.4
Dinv34960 Davidia involucrata HOM05D005220 ORTHO05D006082 8.5e-42 175.3 363 37.7
Lj1g0008070 Lotus japonicus HOM05D005220 ORTHO05D006082 1.5e-41 174.5 336 37.5
TAR374G0076 Trochodendron aralioides HOM05D005220 ORTHO05D006082 2.1e-40 170.6 358 36.3
TAR629G0541 Trochodendron aralioides HOM05D005220 ORTHO05D006082 3.6e-40 169.9 355 38.9
Phvul.008G035000 Phaseolus vulgaris HOM05D005220 ORTHO05D006082 6.1e-40 169.1 302 37.7
Nn3g17397 Nelumbo nucifera HOM05D005220 ORTHO05D006082 1.0e-39 168.3 353 36.8
TAR371G0084 Trochodendron aralioides HOM05D005220 ORTHO05D006082 1.8e-39 167.5 371 38.5
Manes.01G098100 Manihot esculenta HOM05D005220 ORTHO05D006082 3.0e-39 166.8 280 38.6
Potri.017G091700 Populus trichocarpa HOM05D005220 ORTHO05D006082 2.6e-38 163.7 273 38.1
TWI34G1812 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 6.3e-37 159.1 303 36.0
Dinv33817 Davidia involucrata HOM05D005220 ORTHO05D006082 1.1e-36 158.3 271 38.4
Sabra17G0080700 Salix brachista HOM05D005220 ORTHO05D006082 7.0e-36 155.6 227 41.0
Glyma.18G265000 Glycine max HOM05D005220 ORTHO05D006082 1.2e-35 154.8 359 34.5
Glyma.08G242800 Glycine max HOM05D005220 ORTHO05D006082 1.6e-35 154.5 356 33.1
Actinidia07816 Actinidia chinensis HOM05D005220 ORTHO05D006082 3.5e-35 153.3 274 38.3
CiPaw.04G057500 Carya illinoinensis HOM05D005220 ORTHO05D006082 3.5e-35 153.3 362 36.5
Rhsim08G0074200 Rhododendron simsii HOM05D005220 ORTHO05D006082 2.3e-34 150.6 325 36.0
Cfa007639 Carpinus fangiana HOM05D005220 ORTHO05D006082 8.6e-34 148.7 358 33.8
GSVIVG01011505001 Vitis vinifera HOM05D005220 ORTHO05D006082 2.8e-32 143.7 282 36.5
Actinidia01983 Actinidia chinensis HOM05D005220 ORTHO05D006082 3.6e-32 143.3 299 37.1
Cc07_g04000 Coffea canephora HOM05D005220 ORTHO05D006082 4.0e-31 139.8 268 37.7
vmacro18154 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 5.2e-31 139.4 355 32.7
TWI60G0661 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 8.9e-31 138.7 291 34.0
VMungo1383G2795 Vigna mungo HOM05D005220 ORTHO05D006082 3.4e-30 136.7 181 43.1
HanXRQChr14g0448751 Helianthus annuus HOM05D005220 ORTHO05D006082 4.4e-30 136.3 318 35.5
Cfa019301 Carpinus fangiana HOM05D005220 ORTHO05D006082 7.5e-30 135.6 157 47.8
MSTRG.3015 Avicennia marina HOM05D005220 ORTHO05D006082 9.8e-30 135.2 328 34.8
Rhsim10G0044300 Rhododendron simsii HOM05D005220 ORTHO05D006082 2.2e-29 134.0 326 33.4
Haze_07684 Corylus avellana HOM05D005220 ORTHO05D006082 2.9e-29 133.7 159 47.2
arahy.Tifrunner.gnm1.ann1.XVT01H Arachis hypogaea HOM05D005220 ORTHO05D006082 4.9e-29 132.9 376 32.2
Oeu062150.1 Olea europaea HOM05D005220 ORTHO05D006082 1.1e-28 131.7 301 37.5
Haze_14458 Corylus avellana HOM05D005220 ORTHO05D006082 1.4e-28 131.3 386 33.2
Oeu010241.1 Olea europaea HOM05D005220 ORTHO05D006082 1.8e-28 131.0 276 35.1
Lsat_1_v5_gn_2_87740 Lactuca sativa HOM05D005220 ORTHO05D006082 2.4e-28 130.6 289 31.1
Ciclev10020317m.g Citrus clementina HOM05D005220 ORTHO05D006082 4.1e-28 129.8 170 47.6
Sc10g0003210 Simmondsia chinensis HOM05D005220 ORTHO05D006082 1.2e-27 128.3 362 30.9
arahy.Tifrunner.gnm1.ann1.8S7SHD Arachis hypogaea HOM05D005220 ORTHO05D006082 1.6e-27 127.9 371 32.1
Lalb_Chr17g0337031 Lupinus albus HOM05D005220 ORTHO05D006082 1.6e-27 127.9 352 29.3
SalBow1G1470 Salvia bowleyana HOM05D005220 ORTHO05D006082 1.6e-27 127.9 237 36.7
Hma1.2p1_0481F.1_g161950 Hydrangea macrophylla HOM05D005220 ORTHO05D006082 2.0e-27 127.5 301 33.9
vmacro05657 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 3.5e-27 126.7 327 33.3
QL10p018718 Quercus lobata HOM05D005220 ORTHO05D006082 7.8e-27 125.6 149 49.0
CDE10G0382 Ceratophyllum demersum HOM05D005220 ORTHO05D006082 1.0e-26 125.2 216 39.4
Lju41C5T5 Lonicera japonica HOM05D005220 ORTHO05D006082 1.7e-26 124.4 151 43.0
Medtr3g023750 Medicago truncatula HOM05D005220 ORTHO05D006082 1.5e-25 121.3 171 44.4
Aqoxy3G03583 Aquilegia oxysepala HOM05D005220 ORTHO05D006082 1.9e-25 120.9 173 39.3
Eucgr.I01975 Eucalyptus grandis HOM05D005220 ORTHO05D006082 1.9e-25 120.9 284 34.9
PSO478G1432 Papaver somniferum HOM05D005220 ORTHO05D006082 2.5e-25 120.6 326 32.2
Thecc.03G097300 Theobroma cacao HOM05D005220 ORTHO05D006082 3.3e-25 120.2 162 43.8
ClCG06G015820 Citrullus lanatus HOM05D005220 ORTHO05D006082 7.3e-25 119.0 157 42.7
MD14G1208900 Malus domestica HOM05D005220 ORTHO05D006082 9.5e-25 118.6 153 45.8
CiPaw.11G050100 Carya illinoinensis HOM05D005220 ORTHO05D006082 1.6e-24 117.9 158 43.7
PSO017G3052 Papaver somniferum HOM05D005220 ORTHO05D006082 2.1e-24 117.5 362 30.4
Ca_13809_v3 Cicer arietinum L. HOM05D005220 ORTHO05D006082 3.6e-24 116.7 155 47.1
CSS0002601 Camellia sinensis var. sinensis HOM05D005220 ORTHO05D006082 4.7e-24 116.3 367 30.8
Prupe.5G201200 Prunus persica HOM05D005220 ORTHO05D006082 8.0e-24 115.5 156 43.6
DCAR_011050 Daucus carota HOM05D005220 ORTHO05D006082 1.8e-23 114.4 421 27.3
COL.COLO4_22223 Corchorus olitorius HOM05D005220 ORTHO05D006082 2.3e-23 114.0 153 46.4
MELO3C017209.2 Cucumis melo HOM05D005220 ORTHO05D006082 2.3e-23 114.0 155 41.3
CsaV3_1G002740 Cucumis sativus L. HOM05D005220 ORTHO05D006082 2.3e-23 114.0 155 41.3
Duzib205G0201 Durio zibethinus HOM05D005220 ORTHO05D006082 2.3e-23 114.0 162 42.0
PSO302G0007 Papaver somniferum HOM05D005220 ORTHO05D006082 2.3e-23 114.0 205 38.5
GSVIVG01007924001 Vitis vinifera HOM05D005220 ORTHO05D006082 2.3e-23 114.0 157 43.3
Gohir.D07G074000 Gossypium hirsutum HOM05D005220 ORTHO05D006082 3.1e-23 113.6 162 43.2
Hund13159 Selenicereus undatus HOM05D005220 ORTHO05D006082 3.1e-23 113.6 359 29.8
Gorai.001G078200 Gossypium raimondii HOM05D005220 ORTHO05D006082 4.0e-23 113.2 162 43.2
TAR636G1204 Trochodendron aralioides HOM05D005220 ORTHO05D006082 4.0e-23 113.2 153 43.1
MSTRG.23894 Avicennia marina HOM05D005220 ORTHO05D006082 5.2e-23 112.8 200 36.5
Sc04g0003090 Simmondsia chinensis HOM05D005220 ORTHO05D006082 6.8e-23 112.5 163 41.7
Psat7g133400 Pisum sativum HOM05D005220 ORTHO05D006082 8.9e-23 112.1 156 41.7
Sed0005854 Sechium edule HOM05D005220 ORTHO05D006082 8.9e-23 112.1 156 42.3
Gorai.008G196900 Gossypium raimondii HOM05D005220 ORTHO05D006082 1.5e-22 111.3 156 41.7
Cpa.g.sc94.10 Carica papaya HOM05D005220 ORTHO05D006082 2.0e-22 110.9 154 42.2
Gohir.D12G183566 Gossypium hirsutum HOM05D005220 ORTHO05D006082 2.0e-22 110.9 156 41.7
AL5G19390 Arabidopsis lyrata HOM05D005220 ORTHO05D006082 2.6e-22 110.5 243 31.3
Nitab4.5_0007954g0010 Nicotiana tabacum HOM05D005220 ORTHO05D006082 5.8e-22 109.4 282 35.1
FAN18G2755 Fragaria x ananassa HOM05D006409 ORTHO05D008250 1.7e-21 107.8 161 41.0
RcHm_v2.0_Chr7g0182621 Rosa chinensis HOM05D005220 ORTHO05D006082 1.7e-21 107.8 152 43.4
FAN13G1588 Fragaria x ananassa HOM05D006409 ORTHO05D008250 2.2e-21 107.5 158 39.9
TPR.G12226 Trifolium pratense HOM05D005220 ORTHO05D006082 2.2e-21 107.5 154 41.6
FvH4_5g14276 Fragaria vesca HOM05D005220 ORTHO05D006082 2.9e-21 107.1 159 40.9
Sed0003803 Sechium edule HOM05D005220 ORTHO05D006082 2.9e-21 107.1 159 39.6
CAN.G979.12 Capsicum annuum HOM05D005220 ORTHO05D006082 4.9e-21 106.3 212 34.4
Lalb_Chr23g0273001 Lupinus albus HOM05D005220 ORTHO05D006082 4.9e-21 106.3 152 44.7
Peaxi162Scf00629g00420 Petunia axillaris HOM05D005220 ORTHO05D006082 8.3e-21 105.5 152 43.4
Hund02603 Selenicereus undatus HOM05D005220 ORTHO05D006082 8.3e-21 105.5 176 36.9
Nitab4.5_0000212g0170 Nicotiana tabacum HOM05D005220 ORTHO05D006082 1.4e-20 104.8 178 38.8
ECA238G3864 Erigeron canadensis HOM05D005220 ORTHO05D006082 3.2e-20 103.6 246 31.3
PGSC0003DMG400025138 Solanum tuberosum HOM05D005220 ORTHO05D006082 7.0e-20 102.4 208 35.6
Lj1g0005307 Lotus japonicus HOM05D005220 ORTHO05D006082 9.2e-20 102.1 159 40.9
HPP92_009883 Vanilla planifolia HOM05D005220 ORTHO05D006082 9.2e-20 102.1 197 36.5
arahy.Tifrunner.gnm1.ann1.UWUI2N Arachis hypogaea HOM05D005220 ORTHO05D006082 2.0e-19 100.9 152 44.7
arahy.Tifrunner.gnm1.ann1.Y71GGS Arachis hypogaea HOM05D005220 ORTHO05D006082 2.7e-19 100.5 152 46.1
Ah.11g047990 Amaranthus hybridus HOM05D005220 ORTHO05D006082 4.6e-19 99.8 184 34.2
Os10g0324600 Oryza sativa ssp. japonica HOM05D005220 ORTHO05D006082 2.3e-18 97.4 341 31.4
FAN08G2293 Fragaria x ananassa HOM05D005220 ORTHO05D006082 3.9e-18 96.7 153 40.5
Sopen02g016260 Solanum pennellii HOM05D005220 ORTHO05D006082 6.6e-18 95.9 273 31.9
Solyc02g067070.4 Solanum lycopersicum HOM05D005220 ORTHO05D006082 8.6e-18 95.5 273 31.9
HPP92_020440 Vanilla planifolia HOM05D005220 ORTHO05D006082 1.4e-15 88.2 189 31.2
Lj1g0011465 Lotus japonicus HOM05D005220 ORTHO05D006082 3.1e-15 87.0 347 29.1
SGA_v2.0_scaffold52G19178 Striga asiatica HOM05D005220 ORTHO05D006082 6.8e-15 85.9 234 29.9
Medtr5g097950 Medicago truncatula HOM05D005220 ORTHO05D006082 8.9e-15 85.5 156 37.2
AUR62021593 Chenopodium quinoa HOM05D005220 ORTHO05D006082 2.0e-14 84.3 296 30.4
HanXRQChr14g0426851 Helianthus annuus HOM05D005220 ORTHO05D006082 7.5e-14 82.4 147 36.1
CAN.G979.11 Capsicum annuum HOM05D005220 ORTHO05D006082 9.8e-14 82.0 172 37.8
Hund02604 Selenicereus undatus HOM05D005220 ORTHO05D006082 3.7e-13 80.1 240 29.6
HanXRQChr05g0157201 Helianthus annuus HOM05D005220 ORTHO05D006082 2.4e-12 77.4 148 33.8
EL10Ac5g11101 Beta vulgaris HOM05D005220 ORTHO05D006082 3.2e-12 77.0 306 27.5
Lsat_1_v5_gn_5_21960 Lactuca sativa HOM05D005220 ORTHO05D006082 3.2e-12 77.0 144 33.3
MD03G1090800 Malus domestica HOM05D005220 ORTHO05D006082 7.1e-12 75.9 150 34.0
ECA246G3789 Erigeron canadensis HOM05D005220 ORTHO05D006082 1.2e-11 75.1 147 35.4
Thhalv10005570m.g Eutrema salsugineum HOM05D005220 ORTHO05D006082 1.6e-11 74.7 137 31.4
MD00G1013500 Malus domestica HOM05D005220 ORTHO05D006082 1.6e-11 74.7 182 31.9
Prupe.6G075200 Prunus persica HOM05D005220 ORTHO05D006082 2.1e-11 74.3 147 32.7
Aa31LG2G3950 Aethionema arabicum HOM05D005220 ORTHO05D006082 2.7e-11 73.9 194 26.8
Migut.H00644 Erythranthe guttata HOM05D005220 ORTHO05D006082 2.7e-11 73.9 242 34.7
AUR62008499 Chenopodium quinoa HOM05D005220 ORTHO05D006082 3.5e-11 73.6 156 31.4
THA.LOC104801327 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 3.5e-11 73.6 153 32.7
Lsat_1_v5_gn_5_21940 Lactuca sativa HOM05D005220 ORTHO05D006082 4.6e-11 73.2 147 32.0
Dinv38787 Davidia involucrata HOM05D005220 ORTHO05D006082 6.0e-11 72.8 86 43.0
Rhsim07G0108500 Rhododendron simsii HOM05D001088 ORTHO05D002099 3.9e-10 70.1 198 26.3
RcHm_v2.0_Chr5g0065291 Rosa chinensis HOM05D005220 ORTHO05D006082 5.1e-10 69.7 181 30.9
Actinidia20636 Actinidia chinensis HOM05D001670 ORTHO05D006082 8.6e-10 68.9 52 48.1
FAN11G0817 Fragaria x ananassa HOM05D005220 ORTHO05D006082 8.6e-10 68.9 151 31.8
FAN16G3714 Fragaria x ananassa HOM05D005220 ORTHO05D006082 1.5e-09 68.2 154 31.8
FvH4_3g36400 Fragaria vesca HOM05D005220 ORTHO05D006082 1.9e-09 67.8 151 31.1
FAN21G2192 Fragaria x ananassa HOM05D005220 ORTHO05D006082 1.9e-09 67.8 151 31.8
FAN25G3767 Fragaria x ananassa HOM05D005220 ORTHO05D006082 4.3e-09 66.6 146 32.2
CDE11G0492 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 5.6e-09 66.2 178 28.1
THA.LOC104818337 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 5.6e-09 66.2 118 37.3
Actinidia27466 Actinidia chinensis HOM05D001088 ORTHO05D002099 9.5e-09 65.5 168 28.6
AUR62013686 Chenopodium quinoa HOM05D006954 ORTHO05D008729 1.6e-08 64.7 211 28.0
Prupe.2G102500 Prunus persica HOM05D005220 ORTHO05D006082 1.6e-08 64.7 152 34.2
MBI04_g09501_MAGBIO Magnolia biondii HOM05D006954 ORTHO05D008729 2.8e-08 63.9 180 26.1
ATR0580G137 Amborella trichopoda HOM05D003426 ORTHO05D003816 3.6e-08 63.5 159 31.4
FAN04G0536 Fragaria x ananassa HOM05D006954 ORTHO05D008729 3.6e-08 63.5 181 30.9
SHI20280 Sapria himalayana HOM05D006954 ORTHO05D008729 3.6e-08 63.5 155 26.5
ECA236G3196 Erigeron canadensis HOM05D006954 ORTHO05D008729 4.7e-08 63.2 164 27.4
AUR62004161 Chenopodium quinoa HOM05D006954 ORTHO05D008729 6.2e-08 62.8 211 28.0
FvH4_5g18930 Fragaria vesca HOM05D006954 ORTHO05D008729 1.4e-07 61.6 182 30.2
HanXRQChr06g0168891 Helianthus annuus HOM05D006954 ORTHO05D008729 4.0e-07 60.1 149 28.2
HanXRQChr06g0169051 Helianthus annuus HOM05D006954 ORTHO05D008729 4.0e-07 60.1 149 28.2
SGA_v2.0_scaffold11G05525 Striga asiatica HOM05D006954 ORTHO05D008729 4.0e-07 60.1 191 28.8
QL12p012133 Quercus lobata HOM05D006954 ORTHO05D008729 5.2e-07 59.7 220 24.5
Sc02g0002800 Simmondsia chinensis HOM05D006954 ORTHO05D008729 6.8e-07 59.3 168 31.0
vmacro14083 Vaccinium macrocarpon HOM05D006954 ORTHO05D008729 6.8e-07 59.3 174 27.0
Dinv21639 Davidia involucrata HOM05D006954 ORTHO05D008729 8.9e-07 58.9 292 22.6
Duzib205G0178 Durio zibethinus HOM05D006954 ORTHO05D008729 8.9e-07 58.9 300 21.3
FAN13G0002 Fragaria x ananassa HOM05D006954 ORTHO05D008729 8.9e-07 58.9 180 30.0
Ciclev10023836m.g Citrus clementina HOM05D006638 ORTHO05D008246 1.2e-06 58.5 189 24.9
Haze_02712 Corylus avellana HOM05D006954 ORTHO05D008729 1.2e-06 58.5 191 25.7
Dinv43668 Davidia involucrata HOM05D006954 ORTHO05D008729 1.2e-06 58.5 244 23.8
Lj8P262T33 Lonicera japonica HOM05D006954 ORTHO05D008729 1.2e-06 58.5 154 26.6
TAR375G0455 Trochodendron aralioides HOM05D006954 ORTHO05D008729 1.2e-06 58.5 198 23.7
TAR375G1092 Trochodendron aralioides HOM05D006954 ORTHO05D008729 1.2e-06 58.5 198 23.7
Hma1.2p1_0041F.1_g025380 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 1.5e-06 58.2 168 25.0
Rhsim07G0031700 Rhododendron simsii HOM05D001088 ORTHO05D002099 2.0e-06 57.8 171 28.1
CARHR274930 Cardamine hirsuta HOM05D001456 ORTHO05D002799 2.6e-06 57.4 139 26.6
FAN18G2950 Fragaria x ananassa HOM05D006954 ORTHO05D008729 2.6e-06 57.4 182 29.1
Gohir.A12G180900 Gossypium hirsutum HOM05D005220 ORTHO05D006082 3.4e-06 57.0 169 26.6
Cfa011147 Carpinus fangiana HOM05D001088 ORTHO05D002099 4.4e-06 56.6 428 22.9
Lsat_1_v5_gn_7_8881 Lactuca sativa HOM05D006954 ORTHO05D008729 4.4e-06 56.6 141 26.2
Sopen01g036590 Solanum pennellii HOM05D006954 ORTHO05D008729 4.4e-06 56.6 357 23.2
ECA233G0962 Erigeron canadensis HOM05D006954 ORTHO05D008729 5.8e-06 56.2 164 25.0
Lj6C70T9 Lonicera japonica HOM05D006954 ORTHO05D008729 5.8e-06 56.2 150 25.3
RcHm_v2.0_Chr7g0203321 Rosa chinensis HOM05D006954 ORTHO05D008729 5.8e-06 56.2 192 28.1
SEGI_37162 Sequoiadendron giganteum HOM05D015783 ORTHO05D021004 5.8e-06 56.2 142 29.6
Duzib136G0004 Durio zibethinus HOM05D006954 ORTHO05D008729 7.6e-06 55.8 300 21.7
Ciclev10019520m.g Citrus clementina HOM05D006954 ORTHO05D008729 9.9e-06 55.5 218 22.0
PGSC0003DMG400026019 Solanum tuberosum HOM05D006954 ORTHO05D008729 9.9e-06 55.5 362 24.0
GSVIVG01018156001 Vitis vinifera HOM05D006638 ORTHO05D008246 9.9e-06 55.5 180 26.7


User provided reference genes

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