Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 0.0e+00 1166.8 618 100.0
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 1.5e-251 872.8 597 72.9
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 5.4e-249 864.4 608 76.5
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 7.8e-248 860.5 593 72.8
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 9.5e-246 853.6 617 75.2
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 6.8e-244 847.4 616 74.5
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 9.2e-241 837.0 607 70.2
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 1.6e-240 836.3 616 67.5
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 1.1e-238 830.1 619 66.6
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 2.3e-236 822.4 612 71.2
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 8.3e-234 813.9 604 71.7
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 2.4e-233 812.4 617 66.9
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 5.4e-233 811.2 611 69.7
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 7.0e-233 810.8 614 69.9
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 1.3e-231 806.6 617 66.9
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 1.9e-230 802.7 601 70.0
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 3.3e-230 802.0 623 64.8
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 5.6e-230 801.2 630 64.6
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 3.6e-229 798.5 620 64.7
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 3.6e-229 798.5 630 64.4
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 3.1e-228 795.4 593 65.8
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 6.8e-228 794.3 593 65.8
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 8.9e-228 793.9 619 64.1
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 4.4e-227 791.6 613 64.9
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 9.9e-227 790.4 616 68.0
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 9.9e-227 790.4 615 64.9
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.9e-226 788.9 622 64.6
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 1.1e-225 786.9 593 65.8
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 4.1e-225 785.0 594 65.3
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 2.1e-224 782.7 613 64.6
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 3.5e-224 781.9 612 64.9
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 6.0e-224 781.2 627 63.6
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 7.8e-224 780.8 601 69.7
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 3.0e-223 778.9 612 67.0
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 1.5e-222 776.5 576 67.9
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 9.5e-222 773.9 617 68.1
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 1.2e-221 773.5 594 64.5
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 1.2e-221 773.5 597 65.2
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 4.7e-221 771.5 612 63.6
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 8.1e-221 770.8 611 69.6
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 2.4e-220 769.2 611 69.7
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 8.9e-220 767.3 621 65.9
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 2.2e-218 762.7 599 62.6
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 6.4e-218 761.1 612 62.3
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 8.4e-218 760.8 614 64.2
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 1.9e-217 759.6 576 66.5
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 3.2e-217 758.8 618 66.5
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 1.6e-216 756.5 618 66.7
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 2.7e-216 755.7 618 62.6
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 1.0e-215 753.8 612 67.3
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 6.6e-215 751.1 617 62.2
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 8.7e-215 750.7 610 65.4
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 8.7e-215 750.7 623 62.3
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 1.1e-214 750.4 612 65.4
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 1.5e-214 750.0 621 66.2
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 7.3e-214 747.7 628 62.4
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 6.2e-213 744.6 621 61.7
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 8.1e-213 744.2 609 66.7
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 1.1e-212 743.8 610 62.3
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 2.4e-212 742.7 610 65.2
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 4.0e-212 741.9 594 63.1
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.5e-211 740.0 617 64.8
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 1.3e-210 736.9 604 61.3
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 2.2e-210 736.1 621 61.0
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 2.9e-210 735.7 624 63.9
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 4.9e-210 734.9 617 61.3
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 6.4e-210 734.6 619 60.1
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 6.4e-210 734.6 597 60.8
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 1.1e-209 733.8 597 61.0
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 2.4e-209 732.6 617 60.1
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 1.7e-207 726.5 619 59.5
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 1.1e-206 723.8 612 60.6
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 2.5e-206 722.6 618 59.9
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 9.6e-206 720.7 618 61.0
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 9.6e-206 720.7 609 59.6
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 6.2e-205 718.0 635 60.6
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 1.4e-204 716.8 594 59.1
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 6.9e-204 714.5 598 62.4
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 2.0e-203 713.0 614 58.5
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 2.0e-203 713.0 666 55.6
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 2.6e-203 712.6 616 58.0
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 7.6e-203 711.1 630 63.5
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 1.9e-201 706.4 615 60.2
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 7.1e-201 704.5 616 59.3
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 7.1e-201 704.5 631 62.9
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 8.7e-199 697.6 614 63.7
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 3.3e-198 695.7 735 53.1
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 4.0e-196 688.7 646 55.7
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 1.7e-194 683.3 569 62.7
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 2.2e-194 682.9 658 55.0
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 3.3e-190 669.1 613 57.3
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 4.9e-186 655.2 714 50.4
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 1.1e-185 654.1 597 60.8
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 3.0e-183 646.0 613 59.2
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 1.1e-180 637.5 613 59.1
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 3.8e-178 629.0 642 51.9
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 3.8e-178 629.0 642 53.0
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 1.1e-177 627.5 610 58.7
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 2.7e-176 622.9 591 54.3
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 3.3e-174 615.9 680 49.0
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 1.1e-172 610.9 522 59.2
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 8.5e-170 601.3 607 52.9
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 2.5e-169 599.7 618 52.1
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 1.6e-160 570.5 593 50.8
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 3.0e-151 539.7 494 56.5
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 2.0e-150 537.0 627 49.6
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 9.2e-132 474.9 430 65.1
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 1.0e-130 471.5 415 58.8
Solyc05g012390.4 Solanum lycopersicum HOM05D004724 ORTHO05D005734 1.2e-123 448.0 322 67.4
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 7.8e-115 418.7 336 61.3
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 1.0e-114 418.3 416 54.6
CSS0031560 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.0e-114 416.8 373 58.7
CSS0025326 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.1e-111 406.8 373 58.2
CSS0020440 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.2e-109 400.6 369 57.7
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 2.7e-107 393.7 446 51.6
CSS0043256 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 6.2e-104 382.5 373 55.2
CSS0037716 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 5.8e-102 375.9 372 55.4
CSS0003173 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 8.4e-101 372.1 390 52.1
CSS0034194 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.4e-100 371.3 373 54.7
CSS0030883 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 4.0e-95 353.2 378 51.6
Cpa.g.sc1.117 Carica papaya HOM05D004724 ORTHO05D005734 5.3e-87 326.2 207 75.4
Mapoly0002s0313 Marchantia polymorpha HOM05D004724 ORTHO05D005734 1.3e-85 321.6 575 33.2
CSS0040633 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 6.4e-85 319.3 372 49.2
AagrBONN_evm.TU.Sc2ySwM_117.2858 Anthoceros agrestis HOM05D004724 ORTHO05D005734 1.3e-80 305.1 574 33.8
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 5.1e-74 283.1 513 36.3
Pp3c1_28760 Physcomitrium patens HOM05D004724 ORTHO05D005734 3.3e-73 280.4 516 33.9
Pp3c14_20030 Physcomitrium patens HOM05D004724 ORTHO05D005734 2.9e-69 267.3 491 32.6
QL03p072489 Quercus lobata HOM05D000013 ORTHO05D000011 1.2e-59 235.3 209 57.9
EL10Ac5g12464 Beta vulgaris HOM05D004724 ORTHO05D005734 7.9e-59 232.6 280 46.4
SHI32782 Sapria himalayana HOM05D004724 ORTHO05D005734 1.8e-55 221.5 164 65.2
SHI32882 Sapria himalayana HOM05D004724 ORTHO05D005734 5.9e-54 216.5 168 61.9
CBR_g55790 Chara braunii HOM05D004724 ORTHO05D005734 3.2e-52 210.7 558 26.7
GSVIVG01028487001 Vitis vinifera HOM05D004724 ORTHO05D005734 3.0e-42 177.6 237 44.3
GSVIVG01021735001 Vitis vinifera HOM05D004724 ORTHO05D005734 6.7e-42 176.4 237 45.1
Actinidia32302 Actinidia chinensis HOM05D004724 ORTHO05D005734 8.2e-40 169.5 135 61.5
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 5.0e-37 160.2 103 71.8
Gohir.D12G165033 Gossypium hirsutum HOM05D004724 ORTHO05D005734 1.0e-34 152.5 98 73.5
Medtr6g024415 Medicago truncatula HOM05D004724 ORTHO05D005734 4.8e-32 143.7 129 56.6
DCAR_027469 Daucus carota HOM05D004724 ORTHO05D005734 2.7e-30 137.9 191 43.5
SEGI_03319 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 4.7e-27 127.1 95 61.1
QL03p072083 Quercus lobata HOM05D004724 ORTHO05D005734 1.0e-26 125.9 89 66.3
Ah.02g126910 Amaranthus hybridus HOM05D004724 ORTHO05D005734 3.0e-26 124.4 105 57.1
Actinidia32301 Actinidia chinensis HOM05D004724 ORTHO05D005734 6.3e-24 116.7 96 57.3
CDE07G0543 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 1.1e-20 105.9 73 68.5
GSVIVG01009940001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.6e-19 102.1 98 51.0
Medtr1g009040 Medicago truncatula HOM05D004724 ORTHO05D005734 3.6e-19 100.9 160 40.6
C07p19370 Brassica napus HOM05D004724 ORTHO05D005734 4.4e-17 94.0 85 52.9
A07p12930 Brassica napus HOM05D004724 ORTHO05D005734 1.7e-13 82.0 68 57.4
BraA07t29066Z Brassica rapa HOM05D004724 ORTHO05D005734 1.7e-13 82.0 68 57.4
Hma1.2p1_0477F.1_g160970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 3.3e-12 77.8 44 72.7
Hma1.2p1_1953F.1_g308830 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 3.3e-12 77.8 44 72.7
Nn4g24499 Nelumbo nucifera HOM05D000723 ORTHO05D278618 9.5e-12 76.3 96 45.8
BolC7t42456H Brassica oleracea HOM05D004724 ORTHO05D005734 1.6e-11 75.5 68 54.4
Hma1.2p1_0820F.1_g223970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.6e-11 75.5 48 70.8


User provided reference genes

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