Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0064G077 Amborella trichopoda HOM05D002953 ORTHO05D003249 3.0e-171 605.1 319 100.0
Nn4g23349 Nelumbo nucifera HOM05D002953 ORTHO05D003249 2.7e-26 123.6 343 30.9
TAR622G0728 Trochodendron aralioides HOM05D002953 ORTHO05D003249 5.0e-25 119.4 331 33.8
Nn3g17381 Nelumbo nucifera HOM05D002953 ORTHO05D003249 8.6e-25 118.6 339 33.6
Potri.010G160900 Populus trichocarpa HOM05D002953 ORTHO05D003249 4.0e-22 109.8 338 31.1
Medtr4g082910 Medicago truncatula HOM05D002953 ORTHO05D003249 1.7e-20 104.4 367 30.8
Actinidia19918 Actinidia chinensis HOM05D002953 ORTHO05D003249 3.7e-20 103.2 338 29.9
CSS0004001 Camellia sinensis var. sinensis HOM05D002953 ORTHO05D003249 1.4e-19 101.3 328 30.2
TPR.G34076 Trifolium pratense HOM05D002953 ORTHO05D003249 1.4e-19 101.3 366 30.1
Aqoxy3G00465 Aquilegia oxysepala HOM05D002953 ORTHO05D003249 1.9e-19 100.9 338 31.1
Potri.008G093300 Populus trichocarpa HOM05D002953 ORTHO05D003249 1.9e-19 100.9 367 29.4
QL03p071046 Quercus lobata HOM05D002953 ORTHO05D003249 4.1e-19 99.8 348 27.0
FAN22G1160 Fragaria x ananassa HOM05D000954 ORTHO05D003249 5.4e-19 99.4 340 31.2
Ciclev10033969m.g Citrus clementina HOM05D002953 ORTHO05D003249 9.2e-19 98.6 388 30.2
Nitab4.5_0000014g0320 Nicotiana tabacum HOM05D002953 ORTHO05D003249 9.2e-19 98.6 340 29.7
Lj4g0014446 Lotus japonicus HOM05D002953 ORTHO05D003249 3.5e-18 96.7 385 29.1
Sabra10G0122400 Salix brachista HOM05D002953 ORTHO05D003249 4.6e-18 96.3 325 30.8
CDE10G0450 Ceratophyllum demersum HOM05D002953 ORTHO05D003249 1.0e-17 95.1 330 31.8
Oeu016226.1 Olea europaea HOM05D002953 ORTHO05D003249 1.0e-17 95.1 356 29.8
TAR371G0440 Trochodendron aralioides HOM05D002953 ORTHO05D003249 1.0e-17 95.1 357 28.0
TWI75G0656 Tripterygium wilfordii HOM05D002953 ORTHO05D003249 2.3e-17 94.0 313 29.4
Atru.chr11.1683 Acer truncatum HOM05D002953 ORTHO05D003249 3.9e-17 93.2 368 29.1
Rhsim12G0076400 Rhododendron simsii HOM05D002953 ORTHO05D003249 1.1e-16 91.7 384 29.2
FAN07G2390 Fragaria x ananassa HOM05D000954 ORTHO05D000822 1.5e-16 91.3 350 29.4
A08p32200 Brassica napus HOM05D002953 ORTHO05D003249 2.5e-16 90.5 336 28.0
BraA08t35143Z Brassica rapa HOM05D002953 ORTHO05D003249 2.5e-16 90.5 336 28.0
CiPaw.05G127400 Carya illinoinensis HOM05D002953 ORTHO05D003249 3.3e-16 90.1 351 29.1
CANSAT64G0943 Cannabis sativa HOM05D002953 ORTHO05D003249 1.6e-15 87.8 363 28.7
Peaxi162Scf00314g00019 Petunia axillaris HOM05D002953 ORTHO05D003249 2.1e-15 87.4 275 29.8
Cpa.g.sc1.99 Carica papaya HOM05D002953 ORTHO05D003249 8.1e-15 85.5 284 31.0
HPP92_013438 Vanilla planifolia HOM05D002953 ORTHO05D003249 1.4e-14 84.7 347 28.0
Nitab4.5_0002806g0030 Nicotiana tabacum HOM05D000001 ORTHO05D000003 2.3e-14 84.0 299 30.1
VMungo0251G2769 Vigna mungo HOM05D002953 ORTHO05D003249 2.3e-14 84.0 355 29.3
C08p16380 Brassica napus HOM05D002953 ORTHO05D003249 3.1e-14 83.6 339 28.3
Sopen04g001490 Solanum pennellii HOM05D002953 ORTHO05D003249 5.2e-14 82.8 302 27.2
BcaC07g38708 Brassica carinata HOM05D002953 ORTHO05D003249 6.8e-14 82.4 339 28.3
QL10p018596 Quercus lobata HOM05D002953 ORTHO05D003249 6.8e-14 82.4 328 27.4
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 1.2e-13 81.6 337 27.6
Lalb_Chr17g0341061 Lupinus albus HOM05D002953 ORTHO05D003249 1.5e-13 81.3 355 26.8
Sp1g12040 Schrenkiella parvula HOM05D002953 ORTHO05D003249 1.5e-13 81.3 341 27.6
PGR102G2110 Punica granatum HOM05D002953 ORTHO05D003249 2.0e-13 80.9 366 26.8
CDE10G0453 Ceratophyllum demersum HOM05D002953 ORTHO05D003249 3.4e-13 80.1 364 27.2
Prupe.1G282700 Prunus persica HOM05D002953 ORTHO05D003249 3.4e-13 80.1 342 26.6
FvH4_4g30432 Fragaria vesca HOM05D002953 ORTHO05D003249 5.8e-13 79.3 348 26.4
Dinv16709 Davidia involucrata HOM05D002953 ORTHO05D003249 7.6e-13 79.0 248 30.6
ECA234G3661 Erigeron canadensis HOM05D002953 ORTHO05D003249 7.6e-13 79.0 320 29.7
Sopen05g007380 Solanum pennellii HOM05D002953 ORTHO05D003249 9.9e-13 78.6 402 25.4
Phvul.002G168100 Phaseolus vulgaris HOM05D002953 ORTHO05D003249 1.3e-12 78.2 342 26.9
VMungo1215G1853 Vigna mungo HOM05D002953 ORTHO05D003249 2.2e-12 77.4 328 28.0
CARHR014290 Cardamine hirsuta HOM05D002953 ORTHO05D003249 8.4e-12 75.5 339 28.0
DCAR_026019 Daucus carota HOM05D002953 ORTHO05D003249 1.1e-11 75.1 313 26.2
Thhalv10009533m.g Eutrema salsugineum HOM05D002953 ORTHO05D003249 1.1e-11 75.1 348 26.7
BcaC05g25290 Brassica carinata HOM05D002953 ORTHO05D003249 1.9e-11 74.3 311 28.9
BolC8t49262H Brassica oleracea HOM05D002953 ORTHO05D003249 2.4e-11 73.9 359 26.7
Psat7g135400 Pisum sativum HOM05D002953 ORTHO05D003249 3.2e-11 73.6 301 27.6
CSS0035960 Camellia sinensis var. sinensis HOM05D002953 ORTHO05D003249 5.4e-11 72.8 321 27.4
Solyc04g005470.3 Solanum lycopersicum HOM05D002953 ORTHO05D003249 5.4e-11 72.8 330 26.1
Glyma.20G027100 Glycine max HOM05D002953 ORTHO05D003249 7.1e-11 72.4 299 28.4
THA.LOC104807117 Tarenaya hassleriana HOM05D002953 ORTHO05D003249 7.1e-11 72.4 324 29.3
TAR629G0224 Trochodendron aralioides HOM05D002953 ORTHO05D003249 7.1e-11 72.4 254 28.3
COL.COLO4_27923 Corchorus olitorius HOM05D002953 ORTHO05D003249 1.2e-10 71.6 116 37.9
Peaxi162Scf00013g00538 Petunia axillaris HOM05D002953 ORTHO05D003249 1.2e-10 71.6 162 35.8
Haze_11930 Corylus avellana HOM05D002953 ORTHO05D003249 1.6e-10 71.2 334 27.5
SalBow2G1905 Salvia bowleyana HOM05D002953 ORTHO05D003249 1.6e-10 71.2 345 28.1
SalBow2G2783 Salvia bowleyana HOM05D002953 ORTHO05D003249 1.6e-10 71.2 345 28.1
Sed0002075 Sechium edule HOM05D002953 ORTHO05D003249 1.6e-10 71.2 354 28.5
ClCG04G011980 Citrullus lanatus HOM05D002953 ORTHO05D003249 2.1e-10 70.9 296 27.4
Glyma.01G056000 Glycine max HOM05D002953 ORTHO05D003249 2.1e-10 70.9 306 26.5
C05p11700 Brassica napus HOM05D002953 ORTHO05D003249 3.5e-10 70.1 317 28.4
ClCG05G023850 Citrullus lanatus HOM05D002953 ORTHO05D003249 3.5e-10 70.1 344 28.5
CsaV3_5G033170 Cucumis sativus L. HOM05D000954 ORTHO05D000822 3.5e-10 70.1 328 28.7
BolC5t29917H Brassica oleracea HOM05D002953 ORTHO05D003249 4.6e-10 69.7 317 28.4
MD13G1065400 Malus domestica HOM05D002953 ORTHO05D003249 7.8e-10 68.9 275 27.3
TPR.G24432 Trifolium pratense HOM05D002953 ORTHO05D003249 7.8e-10 68.9 328 27.4
PGR083G0095 Punica granatum HOM05D002953 ORTHO05D003249 1.0e-09 68.6 282 27.7
RcHm_v2.0_Chr7g0182351 Rosa chinensis HOM05D002953 ORTHO05D003249 1.0e-09 68.6 261 27.6
Zm00001eb225120 Zea mays HOM05D002953 ORTHO05D003249 1.0e-09 68.6 118 40.7
Gorai.005G144100 Gossypium raimondii HOM05D002953 ORTHO05D003249 1.3e-09 68.2 311 28.3
SalBow5G1999 Salvia bowleyana HOM05D002953 ORTHO05D003249 1.3e-09 68.2 172 33.7
BcaB03g13124 Brassica carinata HOM05D002953 ORTHO05D003249 1.7e-09 67.8 335 27.5
Migut.L01214 Erythranthe guttata HOM05D002953 ORTHO05D003249 1.7e-09 67.8 335 28.4
Thecc.02G335300 Theobroma cacao HOM05D002953 ORTHO05D003249 2.3e-09 67.4 115 38.3
Glyma.07G226700 Glycine max HOM05D002953 ORTHO05D003249 3.9e-09 66.6 291 29.2
Solyc06g069590.3 Solanum lycopersicum HOM05D002953 ORTHO05D003249 3.9e-09 66.6 196 31.1
MELO3C002011.2 Cucumis melo HOM05D002953 ORTHO05D003249 6.6e-09 65.9 266 28.6
Eucgr.B00564 Eucalyptus grandis HOM05D002953 ORTHO05D003249 6.6e-09 65.9 323 27.6
Gohir.A03G103200 Gossypium hirsutum HOM05D002953 ORTHO05D003249 6.6e-09 65.9 311 28.3
Atru.chr9.285 Acer truncatum HOM05D002953 ORTHO05D003249 1.1e-08 65.1 322 28.3
Actinidia19011 Actinidia chinensis HOM05D002953 ORTHO05D003249 1.1e-08 65.1 287 26.5
CsaV3_1G005800 Cucumis sativus L. HOM05D002953 ORTHO05D003249 1.1e-08 65.1 330 27.0
Nitab4.5_0006673g0090 Nicotiana tabacum HOM05D002953 ORTHO05D003249 1.1e-08 65.1 122 38.5
Sabra08G0070100 Salix brachista HOM05D002953 ORTHO05D003249 1.1e-08 65.1 312 29.2
Sed0013431 Sechium edule HOM05D002953 ORTHO05D003249 1.1e-08 65.1 325 27.4
Gohir.D02G128400 Gossypium hirsutum HOM05D002953 ORTHO05D003249 1.5e-08 64.7 311 28.0
Zm00001eb008420 Zea mays HOM05D002953 ORTHO05D003249 1.5e-08 64.7 212 26.9
Glyma.02G114300 Glycine max HOM05D002953 ORTHO05D003249 1.9e-08 64.3 293 25.6
PSO478G1910 Papaver somniferum HOM05D002953 ORTHO05D003249 1.9e-08 64.3 378 25.7
Sopen06g026890 Solanum pennellii HOM05D002953 ORTHO05D003249 1.9e-08 64.3 184 31.5
TAR374G0889 Trochodendron aralioides HOM05D000954 ORTHO05D000822 1.9e-08 64.3 285 28.4
Zm00001eb233330 Zea mays HOM05D002953 ORTHO05D003249 1.9e-08 64.3 175 29.7
Manes.14G083400 Manihot esculenta HOM05D002953 ORTHO05D003249 2.5e-08 63.9 291 24.7
Ah.11g048070 Amaranthus hybridus HOM05D002953 ORTHO05D003249 3.3e-08 63.5 290 28.6
FvH4_5g14350 Fragaria vesca HOM05D002953 ORTHO05D003249 4.3e-08 63.2 269 27.9
Cc00_g02220 Coffea canephora HOM05D002953 ORTHO05D003249 7.3e-08 62.4 257 28.4
Hma1.2p1_0060F.1_g033360 Hydrangea macrophylla HOM05D002953 ORTHO05D003249 9.6e-08 62.0 117 35.0
CiPaw.06G090600 Carya illinoinensis HOM05D002953 ORTHO05D003249 1.2e-07 61.6 318 27.4
AUR62003129 Chenopodium quinoa HOM05D002953 ORTHO05D003249 1.2e-07 61.6 247 29.6
Medtr5g043690 Medicago truncatula HOM05D002953 ORTHO05D003249 1.2e-07 61.6 344 26.5
Sed0010847 Sechium edule HOM05D002953 ORTHO05D003249 1.2e-07 61.6 185 31.4
Medtr3g023650 Medicago truncatula HOM05D002953 ORTHO05D003249 1.6e-07 61.2 117 35.9
Potri.015G049700 Populus trichocarpa HOM05D002953 ORTHO05D003249 1.6e-07 61.2 170 31.8
Gohir.D07G074100 Gossypium hirsutum HOM05D002953 ORTHO05D003249 2.1e-07 60.8 117 35.0
MD16G1063900 Malus domestica HOM05D002953 ORTHO05D003249 2.1e-07 60.8 300 25.0
Prupe.5G200200 Prunus persica HOM05D002953 ORTHO05D003249 2.1e-07 60.8 269 25.7
unitig_8.g3188 Utricularia gibba HOM05D002953 ORTHO05D003249 2.1e-07 60.8 305 26.6
vmacro01327 Vaccinium macrocarpon HOM05D002953 ORTHO05D003249 2.1e-07 60.8 185 32.4
Ca_18812_v3 Cicer arietinum L. HOM05D002953 ORTHO05D003249 2.8e-07 60.5 300 27.3
MD06G1199500 Malus domestica HOM05D002953 ORTHO05D003249 2.8e-07 60.5 269 26.4
Nitab4.5_0001688g0010 Nicotiana tabacum HOM05D002953 ORTHO05D003249 2.8e-07 60.5 177 30.5
Carub.0001s1362 Capsella rubella HOM05D002953 ORTHO05D003249 3.6e-07 60.1 333 26.7
CAN.G587.22 Capsicum annuum HOM05D002953 ORTHO05D003249 3.6e-07 60.1 171 30.4
AUR62007948 Chenopodium quinoa HOM05D002953 ORTHO05D003249 3.6e-07 60.1 245 30.2
AUR62008487 Chenopodium quinoa HOM05D002953 ORTHO05D003249 3.6e-07 60.1 309 26.2
Hma1.2p1_0357F.1_g134470 Hydrangea macrophylla HOM05D002953 ORTHO05D003249 3.6e-07 60.1 241 28.2
TWI81G0838 Tripterygium wilfordii HOM05D002953 ORTHO05D003249 3.6e-07 60.1 117 34.2
arahy.Tifrunner.gnm1.ann1.52HBJM Arachis hypogaea HOM05D002953 ORTHO05D003249 4.7e-07 59.7 124 34.7
COL.COLO4_36882 Corchorus olitorius HOM05D002953 ORTHO05D003249 4.7e-07 59.7 291 25.8
Psat5g198520 Pisum sativum HOM05D002953 ORTHO05D003249 4.7e-07 59.7 117 35.0
GSVIVG01007915001 Vitis vinifera HOM05D002953 ORTHO05D003249 4.7e-07 59.7 272 29.0
AL1G25750 Arabidopsis lyrata HOM05D002953 ORTHO05D003249 6.2e-07 59.3 355 25.9
Cc11_g12310 Coffea canephora HOM05D002953 ORTHO05D003249 6.2e-07 59.3 319 27.0
Gorai.001G078300 Gossypium raimondii HOM05D002953 ORTHO05D003249 6.2e-07 59.3 117 35.0
Lsat_1_v5_gn_4_12001 Lactuca sativa HOM05D002953 ORTHO05D003249 6.2e-07 59.3 320 24.7
Nitab4.5_0000334g0300 Nicotiana tabacum HOM05D000954 ORTHO05D000822 6.2e-07 59.3 336 25.9
Os03g0211500 Oryza sativa ssp. japonica HOM05D002953 ORTHO05D003249 1.1e-06 58.5 344 26.2
Zm00001eb400390 Zea mays HOM05D002953 ORTHO05D003249 1.1e-06 58.5 242 27.3
Migut.I00340 Erythranthe guttata HOM05D002953 ORTHO05D003249 1.4e-06 58.2 120 35.0
arahy.Tifrunner.gnm1.ann1.K4MPXF Arachis hypogaea HOM05D002953 ORTHO05D003249 2.4e-06 57.4 177 30.5
CANSAT80G2766 Cannabis sativa HOM05D002953 ORTHO05D003249 2.4e-06 57.4 331 25.7
Duzib205G1659 Durio zibethinus HOM05D002953 ORTHO05D003249 2.4e-06 57.4 255 28.2
Lj1g0024895 Lotus japonicus HOM05D002953 ORTHO05D003249 2.4e-06 57.4 156 31.4
Phvul.002G068600 Phaseolus vulgaris HOM05D002953 ORTHO05D003249 2.4e-06 57.4 256 26.6
BraA06t24181Z Brassica rapa HOM05D002953 ORTHO05D003249 3.1e-06 57.0 324 27.8
AL2G28430 Arabidopsis lyrata HOM05D002953 ORTHO05D003249 4.0e-06 56.6 124 32.3
CARHR062210 Cardamine hirsuta HOM05D002953 ORTHO05D003249 4.0e-06 56.6 128 32.8
ECA246G1271 Erigeron canadensis HOM05D000773 ORTHO05D000588 4.0e-06 56.6 202 27.2
Lj6C782G17 Lonicera japonica HOM05D002953 ORTHO05D003249 5.2e-06 56.2 310 25.8
Os10g0325400 Oryza sativa ssp. japonica HOM05D002953 ORTHO05D003249 5.2e-06 56.2 121 35.5
Thecc.03G096500 Theobroma cacao HOM05D002953 ORTHO05D003249 5.2e-06 56.2 261 26.8
CiPaw.11G049300 Carya illinoinensis HOM05D002953 ORTHO05D003249 6.8e-06 55.8 320 26.9
Sc11g0002310 Simmondsia chinensis HOM05D002953 ORTHO05D003249 6.8e-06 55.8 169 26.6
SGA_v2.0_scaffold28G11759 Striga asiatica HOM05D004749 ORTHO05D005995 6.8e-06 55.8 182 30.8
Carub.0002s1592 Capsella rubella HOM05D002953 ORTHO05D003249 8.9e-06 55.5 128 30.5


User provided reference genes

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