Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0064G063 Amborella trichopoda HOM05D004709 ORTHO05D005669 3.8e-42 174.5 91 100.0
CAN.G479.31 Capsicum annuum HOM05D004709 ORTHO05D005669 1.4e-28 129.4 87 73.6
Solyc03g115490.1 Solanum lycopersicum HOM05D004709 ORTHO05D005669 1.8e-28 129.0 86 73.3
Sopen03g034490 Solanum pennellii HOM05D004709 ORTHO05D005669 1.8e-28 129.0 86 73.3
PGSC0003DMG400024653 Solanum tuberosum HOM05D004709 ORTHO05D005669 1.8e-28 129.0 86 73.3
Nitab4.5_0002881g0040 Nicotiana tabacum HOM05D004709 ORTHO05D005669 3.1e-28 128.3 86 74.4
Nitab4.5_0004511g0070 Nicotiana tabacum HOM05D004709 ORTHO05D005669 6.9e-28 127.1 86 73.3
TAR622G0455 Trochodendron aralioides HOM05D004709 ORTHO05D005669 9.0e-28 126.7 88 73.9
MELO3C002013.2 Cucumis melo HOM05D004709 ORTHO05D005669 7.6e-27 123.6 86 67.4
HanXRQChr05g0157171 Helianthus annuus HOM05D004709 ORTHO05D005669 1.0e-26 123.2 87 69.0
Lsat_1_v5_gn_5_22101 Lactuca sativa HOM05D004709 ORTHO05D005669 1.3e-26 122.9 85 69.4
CsaV3_1G005830 Cucumis sativus L. HOM05D004709 ORTHO05D005669 1.7e-26 122.5 86 66.3
MBI16_g16369_MAGBIO Magnolia biondii HOM05D004709 ORTHO05D005669 1.7e-26 122.5 88 69.3
Nn4g23362 Nelumbo nucifera HOM05D004709 ORTHO05D005669 2.2e-26 122.1 86 70.9
TWI18G0167 Tripterygium wilfordii HOM05D004709 ORTHO05D005669 3.8e-26 121.3 84 69.0
ClCG04G011960 Citrullus lanatus HOM05D004709 ORTHO05D005669 4.9e-26 120.9 86 66.3
PSO478G1650 Papaver somniferum HOM05D004709 ORTHO05D005669 8.4e-26 120.2 88 67.0
QL10p018658 Quercus lobata HOM05D004709 ORTHO05D005669 8.4e-26 120.2 84 69.0
Ah.10g032000 Amaranthus hybridus HOM05D004709 ORTHO05D005669 1.4e-25 119.4 83 69.9
CiPaw.11G049800 Carya illinoinensis HOM05D004709 ORTHO05D005669 1.4e-25 119.4 85 65.9
PGR083G1512 Punica granatum HOM05D004709 ORTHO05D005669 1.4e-25 119.4 85 68.2
Ciclev10022528m.g Citrus clementina HOM05D004709 ORTHO05D005669 1.9e-25 119.0 87 63.2
Duzib084G0757 Durio zibethinus HOM05D004709 ORTHO05D005669 1.9e-25 119.0 87 65.5
COL.COLO4_36893 Corchorus olitorius HOM05D004709 ORTHO05D005669 2.5e-25 118.6 87 65.5
Gohir.A12G180600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 3.2e-25 118.2 89 62.9
Sed0002201 Sechium edule HOM05D004709 ORTHO05D005669 3.2e-25 118.2 86 66.3
Aqoxy3G03572 Aquilegia oxysepala HOM05D004709 ORTHO05D005669 4.2e-25 117.9 83 68.7
AUR62042435 Chenopodium quinoa HOM05D004709 ORTHO05D005669 5.5e-25 117.5 84 66.7
ClCG06G015840 Citrullus lanatus HOM05D004709 ORTHO05D005669 5.5e-25 117.5 91 62.6
COL.COLO4_31014 Corchorus olitorius HOM05D004709 ORTHO05D005669 5.5e-25 117.5 87 64.4
TAR371G0159 Trochodendron aralioides HOM05D004709 ORTHO05D005669 5.5e-25 117.5 87 67.8
Atru.chr2.2420 Acer truncatum HOM05D004709 ORTHO05D005669 7.1e-25 117.1 90 62.2
Gohir.D12G183300 Gossypium hirsutum HOM05D004709 ORTHO05D005669 7.1e-25 117.1 87 64.4
Lalb_Chr10g0093091 Lupinus albus HOM05D004709 ORTHO05D005669 7.1e-25 117.1 85 63.5
Prupe.3G258000 Prunus persica HOM05D004709 ORTHO05D005669 7.1e-25 117.1 85 67.1
Thecc.03G097000 Theobroma cacao HOM05D004709 ORTHO05D005669 7.1e-25 117.1 87 65.5
Nn7g35950 Nelumbo nucifera HOM05D004709 ORTHO05D005669 9.3e-25 116.7 83 69.9
Gorai.008G196600 Gossypium raimondii HOM05D004709 ORTHO05D005669 1.2e-24 116.3 87 64.4
Cfa019297 Carpinus fangiana HOM05D004709 ORTHO05D005669 1.6e-24 115.9 84 65.5
MD09G1062400 Malus domestica HOM05D004709 ORTHO05D005669 1.6e-24 115.9 85 65.9
Potri.009G079800 Populus trichocarpa HOM05D004709 ORTHO05D005669 1.6e-24 115.9 84 70.2
EL10Ac2g03100 Beta vulgaris HOM05D004709 ORTHO05D005669 2.1e-24 115.5 85 65.9
ECA246G5156 Erigeron canadensis HOM05D004709 ORTHO05D005669 2.1e-24 115.5 83 68.7
Nn3g17388 Nelumbo nucifera HOM05D004709 ORTHO05D005669 2.1e-24 115.5 86 66.3
Rhsim08G0148900 Rhododendron simsii HOM05D004709 ORTHO05D005669 2.1e-24 115.5 85 67.1
Migut.D01673 Erythranthe guttata HOM05D004709 ORTHO05D005669 2.7e-24 115.2 85 64.7
CANSAT56G2672 Cannabis sativa HOM05D004709 ORTHO05D005669 3.5e-24 114.8 85 63.5
AUR62018162 Chenopodium quinoa HOM05D004709 ORTHO05D005669 3.5e-24 114.8 84 64.3
MD00G1156500 Malus domestica HOM05D004709 ORTHO05D005669 3.5e-24 114.8 85 62.4
SalBow5G3312 Salvia bowleyana HOM05D004709 ORTHO05D005669 6.0e-24 114.0 85 65.9
SHI27018 Sapria himalayana HOM05D004709 ORTHO05D005669 6.0e-24 114.0 81 67.9
FvH4_6g47340 Fragaria vesca HOM05D004709 ORTHO05D005669 7.9e-24 113.6 87 62.1
RcHm_v2.0_Chr2g0166371 Rosa chinensis HOM05D004709 ORTHO05D005669 7.9e-24 113.6 84 65.5
FAN14G4554 Fragaria x ananassa HOM05D004709 ORTHO05D005669 1.0e-23 113.2 86 62.8
Sc10g0003220 Simmondsia chinensis HOM05D004709 ORTHO05D005669 1.0e-23 113.2 85 64.7
HanXRQChr04g0101451 Helianthus annuus HOM05D004709 ORTHO05D005669 1.3e-23 112.8 84 64.3
Cpa.g.sc94.6 Carica papaya HOM05D004709 ORTHO05D005669 1.8e-23 112.5 87 63.2
Ca_06818_v3 Cicer arietinum L. HOM05D004709 ORTHO05D005669 1.8e-23 112.5 85 63.5
Manes.06G087400 Manihot esculenta HOM05D004709 ORTHO05D005669 1.8e-23 112.5 89 65.2
Manes.14G083600 Manihot esculenta HOM05D004709 ORTHO05D005669 1.8e-23 112.5 86 64.0
Peaxi162Scf00106g00072 Petunia axillaris HOM05D004709 ORTHO05D005669 1.8e-23 112.5 82 68.3
Zm00001eb011200 Zea mays HOM05D004709 ORTHO05D005669 1.8e-23 112.5 86 61.6
AUR62008495 Chenopodium quinoa HOM05D004709 ORTHO05D005669 2.3e-23 112.1 87 56.3
Phvul.008G035200 Phaseolus vulgaris HOM05D004709 ORTHO05D005669 2.3e-23 112.1 86 62.8
Psat3g200920 Pisum sativum HOM05D004709 ORTHO05D005669 2.3e-23 112.1 87 62.1
Zm00001eb398330 Zea mays HOM05D004709 ORTHO05D005669 2.3e-23 112.1 86 62.8
MELO3C017207.2 Cucumis melo HOM05D004709 ORTHO05D005669 3.0e-23 111.7 85 60.0
FAN05G1711 Fragaria x ananassa HOM05D004709 ORTHO05D005669 3.0e-23 111.7 86 60.5
Lsat_1_v5_gn_1_13721 Lactuca sativa HOM05D004709 ORTHO05D005669 3.0e-23 111.7 84 61.9
Eucgr.B00568 Eucalyptus grandis HOM05D004709 ORTHO05D005669 3.9e-23 111.3 86 60.5
FAN09G0998 Fragaria x ananassa HOM05D004709 ORTHO05D005669 3.9e-23 111.3 86 60.5
Duzib205G1485 Durio zibethinus HOM05D004709 ORTHO05D005669 5.1e-23 110.9 87 59.8
Sed0023667 Sechium edule HOM05D004709 ORTHO05D005669 5.1e-23 110.9 86 62.8
Sed0019301 Sechium edule HOM05D004709 ORTHO05D005669 6.7e-23 110.5 91 56.0
FAN02G1874 Fragaria x ananassa HOM05D004709 ORTHO05D005669 8.7e-23 110.2 87 59.8
Glyma.18G264800 Glycine max HOM05D004709 ORTHO05D005669 8.7e-23 110.2 88 60.2
Glyma.08G242600 Glycine max HOM05D004709 ORTHO05D005669 1.9e-22 109.0 86 60.5
Os08g0239000 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 2.5e-22 108.6 85 62.4
Os10g0406600 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 2.5e-22 108.6 86 61.6
THA.LOC104801321 Tarenaya hassleriana HOM05D004709 ORTHO05D005669 2.5e-22 108.6 86 64.0
Aa31LG11G2140 Aethionema arabicum HOM05D004709 ORTHO05D005669 1.3e-21 106.3 86 62.8
Lj1g0000800 Lotus japonicus HOM05D004709 ORTHO05D005669 1.3e-21 106.3 86 60.5
Medtr0287s0050 Medicago truncatula HOM05D004709 ORTHO05D005669 4.8e-21 104.4 85 57.6
Medtr7g012870 Medicago truncatula HOM05D004709 ORTHO05D005669 4.8e-21 104.4 85 57.6
Prupe.5G200900 Prunus persica HOM05D004709 ORTHO05D005669 6.3e-21 104.0 88 55.7
Gohir.A03G069100 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.8e-20 102.4 82 58.5
DCAR_013071 Daucus carota HOM05D000316 ORTHO05D000374 2.4e-20 102.1 77 70.1
Rhsim12G0152500 Rhododendron simsii HOM05D004709 ORTHO05D005669 5.3e-20 100.9 78 64.1
HanXRQChr17g0545301 Helianthus annuus HOM05D004709 ORTHO05D005669 6.9e-20 100.5 84 60.7
Gohir.D03G095600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.5e-19 99.4 82 57.3
Gorai.003G100300 Gossypium raimondii HOM05D004709 ORTHO05D005669 1.5e-19 99.4 82 57.3
Dinv10689 Davidia involucrata HOM05D004709 ORTHO05D005669 2.0e-19 99.0 72 69.4
Sc04g0003050 Simmondsia chinensis HOM05D004709 ORTHO05D005669 2.0e-19 99.0 83 57.8
CARHR274970 Cardamine hirsuta HOM05D004709 ORTHO05D005669 3.4e-19 98.2 83 56.6
AL8G37880 Arabidopsis lyrata HOM05D004709 ORTHO05D005669 2.2e-18 95.5 83 54.2
Mapoly0030s0074 Marchantia polymorpha HOM05D004709 ORTHO05D005669 5.0e-18 94.4 88 47.7
Carub.0008s2188 Capsella rubella HOM05D004709 ORTHO05D005669 6.5e-18 94.0 83 51.8
Sp2g24450 Schrenkiella parvula HOM05D004709 ORTHO05D005669 6.5e-18 94.0 83 51.8
AT5G61220 Arabidopsis thaliana HOM05D004709 ORTHO05D005669 8.5e-18 93.6 83 54.2
Pp3c1_9190 Physcomitrium patens HOM05D004709 ORTHO05D005669 1.1e-17 93.2 87 47.1
Atru.chr9.371 Acer truncatum HOM05D004709 ORTHO05D005669 1.9e-17 92.4 80 58.8
AUR62021597 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.9e-17 92.4 89 51.7
Thhalv10005205m.g Eutrema salsugineum HOM05D004709 ORTHO05D005669 1.9e-17 92.4 83 51.8
GSVIVG01007919001 Vitis vinifera HOM05D004709 ORTHO05D005669 1.9e-17 92.4 68 63.2
MD08G1088600 Malus domestica HOM05D004709 ORTHO05D005669 2.5e-17 92.0 81 55.6
Actinidia09247 Actinidia chinensis HOM05D004709 ORTHO05D005669 9.3e-17 90.1 69 65.2
A03p46850 Brassica napus HOM05D004709 ORTHO05D005669 9.3e-17 90.1 83 49.4
Pp3c9_6850 Physcomitrium patens HOM05D004709 ORTHO05D005669 9.3e-17 90.1 85 45.9
A02p41520 Brassica napus HOM05D004709 ORTHO05D005669 1.2e-16 89.7 80 51.2
BraA02t09093Z Brassica rapa HOM05D004709 ORTHO05D005669 1.2e-16 89.7 80 51.2
CBR_g38475 Chara braunii HOM05D004709 ORTHO05D005669 1.2e-16 89.7 88 45.5
Dinv38784 Davidia involucrata HOM05D004709 ORTHO05D005669 1.2e-16 89.7 62 71.0
BcaC06g33217 Brassica carinata HOM05D004709 ORTHO05D005669 2.1e-16 89.0 83 49.4
C02p61460 Brassica napus HOM05D004709 ORTHO05D005669 2.7e-16 88.6 82 48.8
BolC2t12197H Brassica oleracea HOM05D004709 ORTHO05D005669 2.7e-16 88.6 82 48.8
BraA03t13805Z Brassica rapa HOM05D004709 ORTHO05D005669 2.7e-16 88.6 83 48.2
C07p44900 Brassica napus HOM05D004709 ORTHO05D005669 3.6e-16 88.2 83 49.4
BolC7t45013H Brassica oleracea HOM05D004709 ORTHO05D005669 3.6e-16 88.2 83 49.4
BcaC01g01257 Brassica carinata HOM05D004709 ORTHO05D005669 6.1e-16 87.4 80 50.0
C03p89860 Brassica napus HOM05D004709 ORTHO05D005669 6.1e-16 87.4 80 50.0
BolC3t21308H Brassica oleracea HOM05D004709 ORTHO05D005669 6.1e-16 87.4 80 50.0
C06p42660 Brassica napus HOM05D004709 ORTHO05D005669 7.9e-16 87.0 80 51.2
Gohir.D12G183150 Gossypium hirsutum HOM05D004709 ORTHO05D005669 7.9e-16 87.0 67 62.7
BcaC07g40932 Brassica carinata HOM05D004709 ORTHO05D005669 1.0e-15 86.7 80 48.8
C07p56170 Brassica napus HOM05D004709 ORTHO05D005669 1.0e-15 86.7 80 50.0
C08p39260 Brassica napus HOM05D004709 ORTHO05D005669 1.0e-15 86.7 80 48.8
BolC6t39173H Brassica oleracea HOM05D004709 ORTHO05D005669 1.0e-15 86.7 80 50.0
Actinidia04845 Actinidia chinensis HOM05D004709 ORTHO05D005669 1.8e-15 85.9 61 68.9
BcaC06g33172 Brassica carinata HOM05D004709 ORTHO05D005669 2.3e-15 85.5 85 50.6
BcaC03g18433 Brassica carinata HOM05D004709 ORTHO05D005669 3.0e-15 85.1 80 50.0
C02p63420 Brassica napus HOM05D004709 ORTHO05D005669 3.0e-15 85.1 80 50.0
BolC2t12409H Brassica oleracea HOM05D004709 ORTHO05D005669 3.0e-15 85.1 80 50.0
A03p02360 Brassica napus HOM05D004709 ORTHO05D005669 3.9e-15 84.7 79 49.4
Carub.0006s3376 Capsella rubella HOM05D004709 ORTHO05D005669 3.3e-14 81.6 81 51.9
Medtr7g083770 Medicago truncatula HOM05D004709 ORTHO05D005669 9.7e-14 80.1 73 50.7
Sabra09G0061800 Salix brachista HOM05D004709 ORTHO05D005669 5.3e-12 74.3 54 66.7
Cre08.g382850 Chlamydomonas reinhardtii HOM05D004709 ORTHO05D005669 6.9e-12 73.9 79 44.3
SMO174G0212 Selaginella moellendorffii HOM05D004709 ORTHO05D005669 1.5e-11 72.8 83 51.8
CSS0011072 Camellia sinensis var. sinensis HOM05D004709 ORTHO05D005669 2.6e-11 72.0 60 61.7
C05p13760 Brassica napus HOM05D004709 ORTHO05D005669 1.3e-10 69.7 73 46.6
BolC5t30114H Brassica oleracea HOM05D004709 ORTHO05D005669 1.3e-10 69.7 73 46.6
BcaC05g25635 Brassica carinata HOM05D004709 ORTHO05D005669 1.7e-10 69.3 73 46.6
unitig_37.g12784 Utricularia gibba HOM05D004709 ORTHO05D005669 3.8e-10 68.2 58 60.3
BraA07t31299Z Brassica rapa HOM05D004709 ORTHO05D005669 5.0e-10 67.8 73 45.2
PRCOL_00002203 Prasinoderma coloniale HOM05D004709 ORTHO05D005669 5.0e-10 67.8 84 41.7
CARHR099960 Cardamine hirsuta HOM05D004709 ORTHO05D005669 5.5e-09 64.3 65 49.2
BcaC03g15765 Brassica carinata HOM05D004709 ORTHO05D005669 7.2e-09 63.9 82 43.9
CDE02G0474 Ceratophyllum demersum HOM05D004709 ORTHO05D005669 2.1e-08 62.4 38 76.3
MCO16G339 Micromonas commoda HOM05D004709 ORTHO05D005669 1.0e-07 60.1 79 38.0
Cfa024147 Carpinus fangiana HOM05D004709 ORTHO05D005669 2.0e-06 55.8 65 43.1


User provided reference genes

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