Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 0.0e+00 1479.5 764 100.0
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 1.5e-104 384.8 655 39.5
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 1.1e-99 368.6 623 38.7
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 2.5e-99 367.5 801 35.6
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 1.1e-97 362.1 757 36.2
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 2.4e-97 360.9 835 34.4
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 7.7e-96 355.9 751 36.0
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 7.7e-96 355.9 668 37.7
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 1.7e-95 354.8 668 37.7
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 3.8e-95 353.6 693 36.5
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 8.5e-95 352.4 715 36.2
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 2.5e-94 350.9 739 36.7
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 9.4e-94 349.0 668 37.7
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 1.2e-93 348.6 659 37.5
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 2.3e-92 344.4 659 36.3
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 8.8e-92 342.4 686 37.5
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 1.5e-91 341.7 692 37.6
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 2.0e-91 341.3 740 36.5
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 2.0e-91 341.3 605 39.0
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 5.7e-91 339.7 665 38.0
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 5.7e-91 339.7 747 34.8
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 4.8e-90 336.7 763 35.3
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 6.3e-90 336.3 607 38.1
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 1.2e-88 332.0 606 36.8
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 3.5e-88 330.5 671 37.4
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 3.5e-88 330.5 745 34.5
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 4.5e-88 330.1 664 35.7
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 4.5e-88 330.1 664 35.7
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 1.3e-87 328.6 671 37.0
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 1.4e-86 325.1 743 34.2
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 4.2e-86 323.6 739 36.0
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 9.4e-86 322.4 745 34.6
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 9.4e-86 322.4 681 36.4
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 1.2e-85 322.0 705 36.0
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 1.6e-85 321.6 709 35.5
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 4.7e-85 320.1 649 36.7
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 4.7e-85 320.1 751 33.7
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 4.7e-85 320.1 681 36.1
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 1.0e-84 318.9 660 36.2
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.1e-83 315.5 631 36.6
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 1.1e-83 315.5 699 35.2
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 3.3e-83 313.9 714 33.6
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 3.7e-82 310.5 681 35.8
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 6.3e-82 309.7 686 35.0
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 3.1e-81 307.4 661 34.8
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 3.1e-81 307.4 661 34.8
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 3.1e-81 307.4 663 36.2
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 5.3e-81 306.6 649 35.0
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 9.1e-81 305.8 562 38.1
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 1.6e-80 305.1 765 33.2
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 2.6e-80 304.3 602 35.7
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 2.6e-80 304.3 674 35.0
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 6.5e-79 299.7 613 38.0
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 8.5e-79 299.3 614 36.5
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 1.9e-78 298.1 688 34.3
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 2.5e-78 297.7 657 35.6
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 5.5e-78 296.6 728 33.5
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 7.2e-78 296.2 663 34.8
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 7.2e-78 296.2 586 37.2
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 1.2e-77 295.4 739 33.4
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 4.7e-77 293.5 749 32.7
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 6.1e-77 293.1 646 33.7
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 1.0e-76 292.4 619 34.4
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 1.4e-76 292.0 616 33.9
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 1.4e-76 292.0 616 34.7
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 1.8e-76 291.6 744 32.5
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 2.3e-76 291.2 671 33.5
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 8.8e-76 289.3 655 34.8
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.2e-75 288.9 763 33.2
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 2.0e-75 288.1 666 34.7
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 4.4e-75 287.0 730 32.7
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 4.8e-74 283.5 605 33.9
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 6.3e-74 283.1 652 34.2
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 1.8e-73 281.6 664 34.9
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 3.1e-73 280.8 755 32.3
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 2.0e-72 278.1 595 35.3
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 1.0e-71 275.8 665 34.3
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 2.2e-71 274.6 754 32.1
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 2.9e-71 274.2 605 35.4
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 3.8e-71 273.9 729 31.4
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 6.5e-71 273.1 808 31.6
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.5e-70 271.9 721 33.6
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 9.4e-70 269.2 653 34.0
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.6e-69 268.5 757 31.8
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 2.1e-69 268.1 603 34.3
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 4.7e-69 266.9 774 30.9
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 6.1e-69 266.5 661 32.5
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 8.0e-69 266.2 696 30.0
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 5.2e-68 263.5 674 32.3
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 5.2e-68 263.5 774 31.8
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 7.5e-67 259.6 734 31.6
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 2.8e-66 257.7 754 30.2
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 7.0e-65 253.1 715 29.8
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.2e-64 252.3 424 39.4
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 6.6e-63 246.5 733 33.7
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 6.6e-63 246.5 756 29.9
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 1.5e-62 245.4 636 32.9
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 1.2e-59 235.7 624 31.6
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 1.3e-58 232.3 666 33.2
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 1.7e-58 231.9 654 31.7
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 2.8e-58 231.1 695 33.2
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 1.6e-56 225.3 626 30.0
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 1.0e-55 222.6 503 33.6
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.4e-52 212.2 747 28.6
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 2.0e-51 208.4 463 33.3
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 2.2e-50 204.9 536 32.1
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 7.0e-49 199.9 454 32.4
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 4.6e-48 197.2 363 37.2
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 1.3e-47 195.7 671 30.3
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.3e-47 195.7 494 33.4
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 2.5e-46 191.4 605 28.8
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 2.1e-45 188.3 361 38.0
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 6.2e-45 186.8 621 28.2
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 1.4e-44 185.7 469 32.2
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 4.0e-44 184.1 333 39.0
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 2.6e-43 181.4 485 31.5
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 1.1e-38 166.0 504 31.5
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 1.2e-37 162.5 462 32.0
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 2.1e-37 161.8 474 29.7
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 2.8e-37 161.4 619 26.8
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 3.6e-37 161.0 452 28.1
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 1.1e-33 149.4 253 37.5
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 3.9e-31 141.0 185 44.3
ATR0594G097 Amborella trichopoda HOM05D004086 ORTHO05D004641 1.1e-30 139.4 93 83.9
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 7.3e-30 136.7 246 37.4
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 7.3e-30 136.7 181 44.2
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 5.8e-27 127.1 521 28.0
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 7.1e-25 120.2 224 37.1
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 9.3e-25 119.8 138 45.7
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 2.7e-24 118.2 144 49.3
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 4.6e-24 117.5 223 37.7
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.0e-23 116.3 361 29.4
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 9.6e-22 109.8 405 24.9
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 5.3e-20 104.0 228 28.1
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 1.3e-18 99.4 254 34.6
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 2.9e-18 98.2 224 33.5
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 4.2e-17 94.4 125 40.8
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 1.3e-15 89.4 358 27.4
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 3.9e-15 87.8 234 33.8
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 5.1e-15 87.4 78 51.3
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.9e-14 85.5 93 44.1
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 7.3e-14 83.6 255 25.9
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 4.8e-13 80.9 166 34.3
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 1.8e-12 79.0 134 37.3
MCO01G289 Micromonas commoda HOM05D004086 ORTHO05D004641 2.4e-12 78.6 612 22.4
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 3.4e-11 74.7 62 58.1
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 5.8e-11 73.9 322 26.7
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 1.3e-10 72.8 85 42.4
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 1.4e-09 69.3 78 42.3
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.4e-09 69.3 95 44.2
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 2.4e-09 68.6 181 34.8
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 7.1e-09 67.0 109 40.4
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.2e-08 66.2 115 41.7
SEGI_37045 Sequoiadendron giganteum HOM05D037714 ORTHO05D004641 2.1e-08 65.5 157 33.1
SEGI_38277 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.3e-07 62.8 157 35.7
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 3.9e-07 61.2 222 25.7
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 1.9e-06 58.9 159 29.6


User provided reference genes

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