Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0064G055 Amborella trichopoda HOM05D006060 ORTHO05D007268 3.4e-59 231.5 118 100.0
Thecc.02G332700 Theobroma cacao HOM05D006060 ORTHO05D007268 1.6e-48 196.1 116 83.6
Gohir.A13G081800 Gossypium hirsutum HOM05D006060 ORTHO05D007268 2.0e-48 195.7 116 83.6
Gohir.D13G081600 Gossypium hirsutum HOM05D006060 ORTHO05D007268 2.0e-48 195.7 116 83.6
Gorai.013G093500 Gossypium raimondii HOM05D006060 ORTHO05D007268 2.0e-48 195.7 116 83.6
Potri.010G159200 Populus trichocarpa HOM05D006060 ORTHO05D007268 2.0e-48 195.7 117 82.9
MELO3C012147.2 Cucumis melo HOM05D006060 ORTHO05D007268 1.3e-47 193.0 116 81.0
CsaV3_5G033260 Cucumis sativus L. HOM05D006060 ORTHO05D007268 1.7e-47 192.6 116 81.0
Duzib248G0204 Durio zibethinus HOM05D006060 ORTHO05D007268 1.7e-47 192.6 116 81.9
Potri.008G095100 Populus trichocarpa HOM05D006060 ORTHO05D007268 1.7e-47 192.6 117 81.2
FvH4_4g30180 Fragaria vesca HOM05D006060 ORTHO05D007268 3.9e-47 191.4 115 80.0
Manes.01G028500 Manihot esculenta HOM05D006060 ORTHO05D007268 3.9e-47 191.4 117 81.2
RcHm_v2.0_Chr4g0438511 Rosa chinensis HOM05D006060 ORTHO05D007268 3.9e-47 191.4 115 80.0
CiPaw.06G092000 Carya illinoinensis HOM05D006060 ORTHO05D007268 5.0e-47 191.0 116 82.8
MBI16_g10268_MAGBIO Magnolia biondii HOM05D006060 ORTHO05D007268 6.6e-47 190.7 116 83.6
Prupe.1G285900 Prunus persica HOM05D006060 ORTHO05D007268 8.6e-47 190.3 116 81.0
Atru.chr11.1651 Acer truncatum HOM05D006060 ORTHO05D007268 1.1e-46 189.9 115 79.1
Ca_24569_v3 Cicer arietinum L. HOM05D006060 ORTHO05D007268 5.6e-46 187.6 116 81.0
PGR102G1832 Punica granatum HOM05D006060 ORTHO05D007268 7.3e-46 187.2 116 79.3
TAR622G0987 Trochodendron aralioides HOM05D006060 ORTHO05D007268 7.3e-46 187.2 116 79.3
Ciclev10033030m.g Citrus clementina HOM05D006060 ORTHO05D007268 1.2e-45 186.4 111 79.3
CANSAT64G1324 Cannabis sativa HOM05D006060 ORTHO05D007268 6.2e-45 184.1 116 81.0
HPP92_014051 Vanilla planifolia HOM05D006060 ORTHO05D007268 6.2e-45 184.1 116 79.3
MD13G1063500 Malus domestica HOM05D006060 ORTHO05D007268 8.1e-45 183.7 116 79.3
Nn4g23399 Nelumbo nucifera HOM05D006060 ORTHO05D007268 8.1e-45 183.7 116 81.9
MD16G1062000 Malus domestica HOM05D006060 ORTHO05D007268 1.1e-44 183.3 116 79.3
ClCG00G002570 Citrullus lanatus HOM05D006060 ORTHO05D007268 1.4e-44 183.0 129 72.9
ClCG05G023750 Citrullus lanatus HOM05D006060 ORTHO05D007268 1.4e-44 183.0 129 72.9
FAN22G0197 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.4e-44 183.0 122 74.6
Psat2g129720 Pisum sativum HOM05D006060 ORTHO05D007268 3.1e-44 181.8 116 77.6
Sed0026741 Sechium edule HOM05D006060 ORTHO05D007268 3.1e-44 181.8 116 75.9
Aqoxy3G00506 Aquilegia oxysepala HOM05D006060 ORTHO05D007268 5.2e-44 181.0 113 77.0
Glyma.05G201000 Glycine max HOM05D006060 ORTHO05D007268 6.8e-44 180.6 116 77.6
Dinv16724 Davidia involucrata HOM05D006060 ORTHO05D007268 1.2e-43 179.9 111 77.5
VMungo0251G0770 Vigna mungo HOM05D006060 ORTHO05D007268 7.5e-43 177.2 116 74.1
Glyma.08G008300 Glycine max HOM05D006060 ORTHO05D007268 9.8e-43 176.8 116 77.6
Phvul.002G282400 Phaseolus vulgaris HOM05D006060 ORTHO05D007268 9.8e-43 176.8 116 74.1
TPR.G24456 Trifolium pratense HOM05D006060 ORTHO05D007268 1.3e-42 176.4 114 74.6
arahy.Tifrunner.gnm1.ann1.GS86GR Arachis hypogaea HOM05D006060 ORTHO05D007268 2.2e-42 175.6 116 74.1
PSO017G1874 Papaver somniferum HOM05D006060 ORTHO05D007268 2.2e-42 175.6 116 75.9
THA.LOC104822014 Tarenaya hassleriana HOM05D006060 ORTHO05D007268 2.9e-42 175.3 114 74.6
Duzib251G0249 Durio zibethinus HOM05D006060 ORTHO05D007268 3.7e-42 174.9 116 75.0
Lj2g0026655 Lotus japonicus HOM05D006060 ORTHO05D007268 3.7e-42 174.9 116 75.9
QL03p072164 Quercus lobata HOM05D006060 ORTHO05D007268 3.7e-42 174.9 140 66.4
QL03p072544 Quercus lobata HOM05D006060 ORTHO05D007268 3.7e-42 174.9 140 66.4
Sc11g0002390 Simmondsia chinensis HOM05D006060 ORTHO05D007268 4.9e-42 174.5 116 74.1
Dinv34077 Davidia involucrata HOM05D006060 ORTHO05D007268 8.3e-42 173.7 116 75.9
Medtr5g044200 Medicago truncatula HOM05D006060 ORTHO05D007268 8.3e-42 173.7 116 73.3
PSO478G3582 Papaver somniferum HOM05D006060 ORTHO05D007268 1.4e-41 172.9 116 75.0
Sp1g22270 Schrenkiella parvula HOM05D006060 ORTHO05D007268 3.2e-41 171.8 116 73.3
Carub.0001s2455 Capsella rubella HOM05D006060 ORTHO05D007268 4.1e-41 171.4 115 72.2
Eucgr.G02454 Eucalyptus grandis HOM05D006060 ORTHO05D007268 4.1e-41 171.4 112 76.8
Lalb_Chr04g0255711 Lupinus albus HOM05D006060 ORTHO05D007268 4.1e-41 171.4 116 70.7
Thhalv10009087m.g Eutrema salsugineum HOM05D006060 ORTHO05D007268 5.4e-41 171.0 114 71.9
SEGI_32210 Sequoiadendron giganteum HOM05D006060 ORTHO05D007268 5.4e-41 171.0 117 72.6
HanXRQChr15g0477061 Helianthus annuus HOM05D006060 ORTHO05D007268 7.1e-41 170.6 116 73.3
BcaB03g14067 Brassica carinata HOM05D006060 ORTHO05D007268 1.2e-40 169.9 116 71.6
CARHR025490 Cardamine hirsuta HOM05D006060 ORTHO05D007268 1.2e-40 169.9 116 73.3
TWI31G0802 Tripterygium wilfordii HOM05D006060 ORTHO05D007268 1.2e-40 169.9 124 70.2
C05p24530 Brassica napus HOM05D006060 ORTHO05D007268 1.6e-40 169.5 112 74.1
AT1G26470 Arabidopsis thaliana HOM05D006060 ORTHO05D007268 2.1e-40 169.1 114 71.9
Os05g0512500 Oryza sativa ssp. japonica HOM05D006060 ORTHO05D007268 2.7e-40 168.7 116 71.6
CSS0014880 Camellia sinensis var. sinensis HOM05D006060 ORTHO05D007268 4.6e-40 167.9 114 71.9
Zm00001eb292660 Zea mays HOM05D006060 ORTHO05D007268 4.6e-40 167.9 108 79.6
MD02G1257200 Malus domestica HOM05D006060 ORTHO05D007268 6.0e-40 167.5 115 72.2
AL1G39270 Arabidopsis lyrata HOM05D006060 ORTHO05D007268 1.0e-39 166.8 114 70.2
A09p39890 Brassica napus HOM05D006060 ORTHO05D007268 1.3e-39 166.4 123 69.1
Lsat_1_v5_gn_3_55960 Lactuca sativa HOM05D006060 ORTHO05D007268 1.7e-39 166.0 116 71.6
ECA246G0948 Erigeron canadensis HOM05D006060 ORTHO05D007268 6.6e-39 164.1 114 69.3
Aa31LG7G8620 Aethionema arabicum HOM05D006060 ORTHO05D007268 8.6e-39 163.7 126 67.5
BcaC06g35142 Brassica carinata HOM05D006060 ORTHO05D007268 8.6e-39 163.7 111 72.1
HanXRQChr12g0375301 Helianthus annuus HOM05D006060 ORTHO05D007268 8.6e-39 163.7 116 70.7
CDE02G4092 Ceratophyllum demersum HOM05D006060 ORTHO05D007268 1.1e-38 163.3 115 73.9
Hund05841 Selenicereus undatus HOM05D006060 ORTHO05D007268 1.1e-38 163.3 116 72.4
GSVIVG01012208001 Vitis vinifera HOM05D006060 ORTHO05D007268 2.5e-38 162.2 115 69.6
BolC5t31187H Brassica oleracea HOM05D006060 ORTHO05D007268 7.3e-38 160.6 124 66.9
A07p12940 Brassica napus HOM05D006060 ORTHO05D007268 6.2e-37 157.5 119 67.2
C07p19380 Brassica napus HOM05D006060 ORTHO05D007268 6.2e-37 157.5 129 65.1
BolC7t42457H Brassica oleracea HOM05D006060 ORTHO05D007268 6.2e-37 157.5 116 69.0
EL10Ac6g14984 Beta vulgaris HOM05D006060 ORTHO05D007268 1.1e-36 156.8 127 64.6
Medtr6g053980 Medicago truncatula HOM05D006060 ORTHO05D007268 1.1e-36 156.8 117 65.0
CAN.G616.32 Capsicum annuum HOM05D006060 ORTHO05D007268 1.4e-36 156.4 115 67.8
PGSC0003DMG400028321 Solanum tuberosum HOM05D006060 ORTHO05D007268 6.8e-36 154.1 115 67.0
Sopen05g007220 Solanum pennellii HOM05D006060 ORTHO05D007268 1.5e-35 152.9 115 66.1
Solyc05g012400.4 Solanum lycopersicum HOM05D006060 ORTHO05D007268 3.4e-35 151.8 115 65.2
FAN07G0043 Fragaria x ananassa HOM05D006060 ORTHO05D007268 7.6e-35 150.6 115 68.7
Hund25185 Selenicereus undatus HOM05D006060 ORTHO05D007268 9.9e-35 150.2 150 56.0
Sabra10G0120900 Salix brachista HOM05D006060 ORTHO05D007268 2.2e-34 149.1 119 69.7
FAN12G2760 Fragaria x ananassa HOM05D006060 ORTHO05D007268 6.4e-34 147.5 115 67.8
SGA_v2.0_scaffold36G14451 Striga asiatica HOM05D006060 ORTHO05D007268 1.1e-33 146.7 111 66.7
Oeu048147.1 Olea europaea HOM05D006060 ORTHO05D007268 2.4e-33 145.6 115 60.9
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 4.1e-33 144.8 106 67.9
SalBow2G0810 Salvia bowleyana HOM05D006060 ORTHO05D007268 7.1e-33 144.1 114 63.2
MSTRG.7750 Avicennia marina HOM05D006060 ORTHO05D007268 2.1e-32 142.5 114 62.3
Peaxi162Scf00175g00019 Petunia axillaris HOM05D006060 ORTHO05D007268 4.6e-32 141.4 88 72.7
FAN17G1885 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.0e-31 140.2 109 69.7
Migut.L01198 Erythranthe guttata HOM05D006060 ORTHO05D007268 3.0e-31 138.7 118 61.9
SMO351G0453 Selaginella moellendorffii HOM05D006060 ORTHO05D007268 3.0e-31 138.7 111 63.1
AUR62003112 Chenopodium quinoa HOM05D006060 ORTHO05D007268 8.6e-31 137.1 171 47.4
Nitab4.5_0000231g0430 Nicotiana tabacum HOM05D006060 ORTHO05D007268 8.6e-31 137.1 86 70.9
arahy.Tifrunner.gnm1.ann1.KWWI2Y Arachis hypogaea HOM05D006060 ORTHO05D007268 1.1e-30 136.7 129 61.2
Sabra08G0071500 Salix brachista HOM05D006060 ORTHO05D007268 1.1e-30 136.7 134 56.0
unitig_747.g21188 Utricularia gibba HOM05D006060 ORTHO05D007268 1.5e-30 136.3 115 59.1
PGSC0003DMG400042856 Solanum tuberosum HOM05D006060 ORTHO05D007268 1.2e-29 133.3 115 58.3
SGA_v2.0_scaffold16G07773 Striga asiatica HOM05D006060 ORTHO05D007268 1.2e-29 133.3 126 56.3
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 2.1e-29 132.5 83 73.5
Mapoly0056s0111 Marchantia polymorpha HOM05D006060 ORTHO05D007268 2.8e-29 132.1 106 64.2
Pp3c14_19070 Physcomitrium patens HOM05D006060 ORTHO05D007268 2.8e-29 132.1 103 63.1
Lalb_Chr10g0098731 Lupinus albus HOM05D006060 ORTHO05D007268 4.7e-29 131.3 92 66.3
A03p24590 Brassica napus HOM05D006060 ORTHO05D007268 1.4e-28 129.8 111 62.2
BraA09t39056Z Brassica rapa HOM05D006060 ORTHO05D007268 5.2e-28 127.9 111 61.3
BraA09t39488Z Brassica rapa HOM05D006060 ORTHO05D007268 6.9e-28 127.5 98 65.3
Ah.03g138960 Amaranthus hybridus HOM05D006060 ORTHO05D007268 1.5e-27 126.3 116 60.3
Sopen05g007230 Solanum pennellii HOM05D006060 ORTHO05D007268 2.6e-27 125.6 115 55.7
Solyc05g012410.2 Solanum lycopersicum HOM05D006060 ORTHO05D007268 4.4e-27 124.8 115 55.7
BraA07t29067Z Brassica rapa HOM05D006060 ORTHO05D007268 7.6e-27 124.0 116 60.3
Nitab4.5_0004171g0060 Nicotiana tabacum HOM05D006060 ORTHO05D007268 9.9e-27 123.6 82 69.5
COL.COLO4_27898 Corchorus olitorius HOM05D006060 ORTHO05D007268 6.4e-26 120.9 67 82.1
Haze_11918 Corylus avellana HOM05D006060 ORTHO05D007268 1.1e-25 120.2 68 82.4
Actinidia28644 Actinidia chinensis HOM05D006060 ORTHO05D007268 1.4e-25 119.8 119 56.3
Cc11_g12110 Coffea canephora HOM05D006060 ORTHO05D007268 2.8e-21 105.5 68 69.1
AUR62007927 Chenopodium quinoa HOM05D006060 ORTHO05D007268 1.8e-20 102.8 171 38.6
PGSC0003DMG400041308 Solanum tuberosum HOM05D006060 ORTHO05D007268 2.4e-20 102.4 98 57.1
C02p24560 Brassica napus HOM05D006060 ORTHO05D007268 8.4e-18 94.0 82 58.5
DCAR_007189 Daucus carota HOM05D006060 ORTHO05D007268 7.4e-14 80.9 51 74.5
A07p29750 Brassica napus HOM05D006060 ORTHO05D007268 2.8e-13 79.0 83 55.4
CBR_g4585 Chara braunii HOM05D006060 ORTHO05D007268 6.2e-13 77.8 65 53.8
TPR.G29681 Trifolium pratense HOM05D006060 ORTHO05D007268 2.4e-12 75.9 60 60.0
BcaB03g11990 Brassica carinata HOM05D006060 ORTHO05D007268 2.2e-10 69.3 49 63.3
Duzib251G0730 Durio zibethinus HOM05D006060 ORTHO05D007268 8.7e-07 57.4 60 55.0
SHI21665 Sapria himalayana HOM05D000105 ORTHO05D000023 5.6e-06 54.7 52 59.6
Cc11_g12100 Coffea canephora HOM05D006060 ORTHO05D007268 7.4e-06 54.3 66 47.0


User provided reference genes

Program Settings