Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0059G040 Amborella trichopoda HOM05D002897 ORTHO05D008718 1.8e-48 195.7 101 100.0
TAR624G0001 Trochodendron aralioides HOM05D002897 ORTHO05D008718 1.1e-21 106.7 97 54.6
Gohir.D11G160500 Gossypium hirsutum HOM05D002897 ORTHO05D008718 1.8e-21 105.9 95 54.7
Gorai.007G171100 Gossypium raimondii HOM05D002897 ORTHO05D008718 1.8e-21 105.9 95 54.7
GSVIVG01030483001 Vitis vinifera HOM05D002897 ORTHO05D008718 1.8e-21 105.9 92 58.7
Thecc.01G180000 Theobroma cacao HOM05D002897 ORTHO05D008718 6.9e-21 104.0 92 56.5
Lsat_1_v5_gn_5_123640 Lactuca sativa HOM05D002897 ORTHO05D008718 9.1e-21 103.6 92 51.1
ECA234G1553 Erigeron canadensis HOM05D002897 ORTHO05D008718 1.2e-20 103.2 92 52.2
Peaxi162Scf00921g00023 Petunia axillaris HOM05D002897 ORTHO05D008718 1.2e-20 103.2 95 52.6
Haze_12787 Corylus avellana HOM05D002897 ORTHO05D008718 2.0e-20 102.4 95 53.7
PGSC0003DMG400000696 Solanum tuberosum HOM05D002897 ORTHO05D008718 2.0e-20 102.4 92 54.3
Lj8C128G4 Lonicera japonica HOM05D002897 ORTHO05D008718 2.6e-20 102.1 90 55.6
HanXRQChr12g0373611 Helianthus annuus HOM05D002897 ORTHO05D008718 4.5e-20 101.3 92 48.9
MBI19_g24999_MAGBIO Magnolia biondii HOM05D002897 ORTHO05D008718 5.9e-20 100.9 93 54.8
Prupe.3G212700 Prunus persica HOM05D002897 ORTHO05D008718 5.9e-20 100.9 92 55.4
Carub.0001s0433 Capsella rubella HOM05D002897 ORTHO05D008718 1.3e-19 99.8 93 53.8
Duzib138G1172 Durio zibethinus HOM05D002897 ORTHO05D008718 1.3e-19 99.8 90 53.3
Sc06g0009610 Simmondsia chinensis HOM05D002897 ORTHO05D008718 1.3e-19 99.8 95 49.5
Atru.chr6.3235 Acer truncatum HOM05D002897 ORTHO05D008718 1.7e-19 99.4 92 52.2
Cfa014332 Carpinus fangiana HOM05D002897 ORTHO05D008718 1.7e-19 99.4 95 51.6
Manes.13G067750 Manihot esculenta HOM05D002897 ORTHO05D008718 2.2e-19 99.0 92 51.1
Manes.13G067751 Manihot esculenta HOM05D002897 ORTHO05D008718 2.2e-19 99.0 92 51.1
Gohir.A11G153700 Gossypium hirsutum HOM05D002897 ORTHO05D008718 2.9e-19 98.6 95 51.6
Nitab4.5_0000482g0070 Nicotiana tabacum HOM05D002897 ORTHO05D008718 2.9e-19 98.6 92 52.2
PSO210G2604 Papaver somniferum HOM05D002897 ORTHO05D008718 2.9e-19 98.6 95 48.4
SGA_v2.0_scaffold49G18345 Striga asiatica HOM05D002897 ORTHO05D008718 2.9e-19 98.6 95 49.5
THA.LOC104826141 Tarenaya hassleriana HOM05D002897 ORTHO05D008718 2.9e-19 98.6 95 51.6
CiPaw.03G157200 Carya illinoinensis HOM05D002897 ORTHO05D008718 3.8e-19 98.2 95 50.5
Nitab4.5_0012091g0010 Nicotiana tabacum HOM05D002897 ORTHO05D008718 3.8e-19 98.2 92 52.2
Oeu051891.2 Olea europaea HOM05D002897 ORTHO05D008718 3.8e-19 98.2 92 50.0
CDE07G0516 Ceratophyllum demersum HOM05D002897 ORTHO05D008718 5.0e-19 97.8 97 49.5
MSTRG.14141 Avicennia marina HOM05D002897 ORTHO05D008718 6.5e-19 97.4 93 51.6
Thhalv10008572m.g Eutrema salsugineum HOM05D002897 ORTHO05D008718 6.5e-19 97.4 93 52.7
Nn1g07262 Nelumbo nucifera HOM05D002897 ORTHO05D008718 6.5e-19 97.4 92 51.1
Os06g0239700 Oryza sativa ssp. japonica HOM05D002897 ORTHO05D008718 6.5e-19 97.4 90 51.1
Aqoxy1G03476 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 8.5e-19 97.1 92 51.1
Ciclev10016301m.g Citrus clementina HOM05D002897 ORTHO05D008718 8.5e-19 97.1 92 50.0
CSS0022002 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 1.4e-18 96.3 92 50.0
Solyc07g049200.4 Solanum lycopersicum HOM05D002897 ORTHO05D008718 2.5e-18 95.5 92 51.1
Migut.H01234 Erythranthe guttata HOM05D002897 ORTHO05D008718 4.2e-18 94.7 92 47.8
BcaB07g32946 Brassica carinata HOM05D002897 ORTHO05D008718 5.5e-18 94.4 91 51.6
A09p33710 Brassica napus HOM05D002897 ORTHO05D008718 5.5e-18 94.4 93 50.5
BraA09t38920Z Brassica rapa HOM05D002897 ORTHO05D008718 5.5e-18 94.4 93 50.5
BcaC05g27288 Brassica carinata HOM05D002897 ORTHO05D008718 7.2e-18 94.0 93 50.5
C05p31940 Brassica napus HOM05D002897 ORTHO05D008718 7.2e-18 94.0 93 50.5
RcHm_v2.0_Chr2g0158471 Rosa chinensis HOM05D002897 ORTHO05D008718 7.2e-18 94.0 92 45.7
Sopen07g025210 Solanum pennellii HOM05D002897 ORTHO05D008718 7.2e-18 94.0 92 50.0
AT1G05060 Arabidopsis thaliana HOM05D002897 ORTHO05D008718 9.4e-18 93.6 94 50.0
BolC5t31920H Brassica oleracea HOM05D002897 ORTHO05D008718 9.4e-18 93.6 93 49.5
AUR62035641 Chenopodium quinoa HOM05D002897 ORTHO05D008718 9.4e-18 93.6 92 48.9
Dinv39736 Davidia involucrata HOM05D002897 ORTHO05D008718 9.4e-18 93.6 89 50.6
Phvul.008G211400 Phaseolus vulgaris HOM05D002897 ORTHO05D008718 9.4e-18 93.6 92 50.0
AL1G14810 Arabidopsis lyrata HOM05D002897 ORTHO05D008718 1.2e-17 93.2 94 50.0
Cpa.g.sc132.3 Carica papaya HOM05D002897 ORTHO05D008718 1.2e-17 93.2 95 47.4
Potri.014G156700 Populus trichocarpa HOM05D002897 ORTHO05D008718 1.2e-17 93.2 92 47.8
Actinidia09731 Actinidia chinensis HOM05D002897 ORTHO05D008718 2.1e-17 92.4 92 47.8
DCAR_012931 Daucus carota HOM05D002897 ORTHO05D008718 2.1e-17 92.4 95 46.3
Hma1.2p1_1986F.1_g310090 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 2.7e-17 92.0 92 50.0
AUR62017163 Chenopodium quinoa HOM05D002897 ORTHO05D008718 3.6e-17 91.7 92 47.8
ClCG02G002140 Citrullus lanatus HOM05D002897 ORTHO05D008718 3.6e-17 91.7 92 46.7
Rhsim06G0166000 Rhododendron simsii HOM05D002897 ORTHO05D008718 3.6e-17 91.7 92 47.8
Sabra14G0118500 Salix brachista HOM05D002897 ORTHO05D008718 4.7e-17 91.3 95 46.3
Sp1g03930 Schrenkiella parvula HOM05D002897 ORTHO05D008718 4.7e-17 91.3 93 50.5
CARHR004510 Cardamine hirsuta HOM05D002897 ORTHO05D008718 6.1e-17 90.9 94 50.0
SalBow1G3579 Salvia bowleyana HOM05D002897 ORTHO05D008718 6.1e-17 90.9 92 46.7
TPR.G14446 Trifolium pratense HOM05D002897 ORTHO05D008718 6.1e-17 90.9 97 44.3
Hma1.2p1_2044F.1_g312350 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 7.9e-17 90.5 92 48.9
QL08p031170 Quercus lobata HOM05D002897 ORTHO05D008718 7.9e-17 90.5 92 44.6
Cc05_g03270 Coffea canephora HOM05D002897 ORTHO05D008718 1.0e-16 90.1 92 46.7
TWI18G1283 Tripterygium wilfordii HOM05D002897 ORTHO05D008718 1.0e-16 90.1 95 47.4
Zm00001eb280010 Zea mays HOM05D002897 ORTHO05D008718 1.0e-16 90.1 91 49.5
FAN05G4893 Fragaria x ananassa HOM05D002897 ORTHO05D008718 1.4e-16 89.7 92 42.4
Glyma.02G270500 Glycine max HOM05D002897 ORTHO05D008718 1.4e-16 89.7 92 45.7
unitig_21.g21003 Utricularia gibba HOM05D002897 ORTHO05D008718 1.4e-16 89.7 92 46.7
FvH4_6g42620 Fragaria vesca HOM05D002897 ORTHO05D008718 1.8e-16 89.4 92 41.3
FAN14G2576 Fragaria x ananassa HOM05D002897 ORTHO05D008718 1.8e-16 89.4 92 41.3
LjContig00564g0002899 Lotus japonicus HOM05D002897 ORTHO05D008718 1.8e-16 89.4 92 44.6
MELO3C018838.2 Cucumis melo HOM05D002897 ORTHO05D008718 2.3e-16 89.0 92 44.6
SalBow1G2496 Salvia bowleyana HOM05D002897 ORTHO05D008718 2.3e-16 89.0 92 45.7
VMungo0647G1784 Vigna mungo HOM05D002897 ORTHO05D008718 2.3e-16 89.0 92 48.9
Ca_06120_v3 Cicer arietinum L. HOM05D002897 ORTHO05D008718 3.9e-16 88.2 92 42.4
FAN02G2770 Fragaria x ananassa HOM05D002897 ORTHO05D008718 3.9e-16 88.2 92 41.3
Sed0013072 Sechium edule HOM05D002897 ORTHO05D008718 5.1e-16 87.8 92 46.7
CsaV3_7G003360 Cucumis sativus L. HOM05D002897 ORTHO05D008718 6.7e-16 87.4 92 43.5
Eucgr.A01101 Eucalyptus grandis HOM05D002897 ORTHO05D008718 6.7e-16 87.4 90 47.8
Glyma.14G046500 Glycine max HOM05D002897 ORTHO05D008718 6.7e-16 87.4 92 46.7
arahy.Tifrunner.gnm1.ann1.QRVI7E Arachis hypogaea HOM05D002897 ORTHO05D008718 1.5e-15 86.3 92 39.1
Lalb_Chr04g0249891 Lupinus albus HOM05D002897 ORTHO05D008718 2.0e-15 85.9 92 44.6
Psat4g114440 Pisum sativum HOM05D002897 ORTHO05D008718 2.0e-15 85.9 92 41.3
Medtr5g085980 Medicago truncatula HOM05D002897 ORTHO05D008718 3.3e-15 85.1 92 41.3
arahy.Tifrunner.gnm1.ann1.YEZ88R Arachis hypogaea HOM05D002897 ORTHO05D008718 5.7e-15 84.3 92 38.0
Aa31LG1G19710 Aethionema arabicum HOM05D002897 ORTHO05D008718 7.4e-15 84.0 93 47.3
vmacro12177 Vaccinium macrocarpon HOM05D002897 ORTHO05D008718 9.7e-15 83.6 92 43.5
EL10Ac4g07512 Beta vulgaris HOM05D002897 ORTHO05D008718 1.7e-14 82.8 92 42.4
Aqoxy1G03469 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 2.8e-14 82.0 91 47.3
CSS0034853 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 2.5e-10 68.9 90 40.0
Pp3c23_20260 Physcomitrium patens HOM05D002897 ORTHO05D008718 7.2e-10 67.4 92 38.0
HPP92_017354 Vanilla planifolia HOM05D002897 ORTHO05D008718 4.7e-09 64.7 90 37.8
AagrBONN_evm.TU.Sc2ySwM_117.2821 Anthoceros agrestis HOM05D002897 ORTHO05D008718 1.8e-08 62.8 91 36.3
SEGI_41028 Sequoiadendron giganteum HOM05D002897 ORTHO05D008718 5.2e-08 61.2 93 33.3
CANSAT64G1786 Cannabis sativa HOM05D002897 ORTHO05D008718 8.8e-08 60.5 58 44.8
MD17G1102200 Malus domestica HOM05D002897 ORTHO05D008718 1.1e-07 60.1 45 64.4


User provided reference genes

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