Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0059G025 Amborella trichopoda HOM05D002231 ORTHO05D006103 2.5e-81 305.4 163 100.0
Cfa009373 Carpinus fangiana HOM05D002231 ORTHO05D006103 4.1e-39 165.2 157 64.3
QL03p052604 Quercus lobata HOM05D002231 ORTHO05D006103 4.1e-39 165.2 123 72.4
Prupe.1G225400 Prunus persica HOM05D002231 ORTHO05D006103 5.3e-39 164.9 103 81.6
CSS0047868 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 7.0e-39 164.5 158 60.1
CSS0048016 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 7.0e-39 164.5 158 60.1
Haze_12423 Corylus avellana HOM05D002231 ORTHO05D006103 2.0e-38 162.9 159 63.5
Phvul.001G262200 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 3.5e-38 162.2 105 80.0
VMungo1383G1118 Vigna mungo HOM05D002231 ORTHO05D006103 5.9e-38 161.4 109 77.1
TPR.G17792 Trifolium pratense HOM05D002231 ORTHO05D006103 1.0e-37 160.6 104 79.8
CiPaw.06G102900 Carya illinoinensis HOM05D002231 ORTHO05D006103 1.3e-37 160.2 159 62.9
Ciclev10032446m.g Citrus clementina HOM05D002231 ORTHO05D006103 1.3e-37 160.2 151 60.3
Psat5g096440 Pisum sativum HOM05D002231 ORTHO05D006103 1.3e-37 160.2 104 77.9
Dinv10954 Davidia involucrata HOM05D002231 ORTHO05D006103 1.7e-37 159.8 106 79.2
Glyma.11G250900 Glycine max HOM05D002231 ORTHO05D006103 1.7e-37 159.8 110 77.3
MBI11_g05330_MAGBIO Magnolia biondii HOM05D002231 ORTHO05D006103 2.2e-37 159.5 141 68.1
Thecc.02G207900 Theobroma cacao HOM05D002231 ORTHO05D006103 2.2e-37 159.5 106 79.2
GSVIVG01010488001 Vitis vinifera HOM05D002231 ORTHO05D006103 2.2e-37 159.5 152 61.8
CANSAT01G1083 Cannabis sativa HOM05D002231 ORTHO05D006103 2.9e-37 159.1 101 80.2
Dinv17566 Davidia involucrata HOM05D002231 ORTHO05D005593 2.9e-37 159.1 104 79.8
Glyma.18G006100 Glycine max HOM05D002231 ORTHO05D006103 2.9e-37 159.1 110 76.4
CDE02G1146 Ceratophyllum demersum HOM05D002231 ORTHO05D006103 3.8e-37 158.7 96 83.3
Duzib248G1458 Durio zibethinus HOM05D002231 ORTHO05D006103 3.8e-37 158.7 106 78.3
Rhsim12G0025500 Rhododendron simsii HOM05D002231 ORTHO05D006103 3.8e-37 158.7 164 59.1
MELO3C011862.2 Cucumis melo HOM05D002231 ORTHO05D006103 5.0e-37 158.3 154 61.0
Manes.12G011000 Manihot esculenta HOM05D002231 ORTHO05D006103 5.0e-37 158.3 107 78.5
Actinidia30646 Actinidia chinensis HOM05D002231 ORTHO05D006103 6.5e-37 157.9 106 78.3
CiPaw.05G109300 Carya illinoinensis HOM05D002231 ORTHO05D006103 1.1e-36 157.1 158 61.4
Ca_16456_v3 Cicer arietinum L. HOM05D002231 ORTHO05D006103 1.1e-36 157.1 104 77.9
MD13G1119600 Malus domestica HOM05D002231 ORTHO05D006103 1.1e-36 157.1 103 78.6
COL.COLO4_20407 Corchorus olitorius HOM05D002231 ORTHO05D006103 1.5e-36 156.8 106 75.5
MD16G1119800 Malus domestica HOM05D002231 ORTHO05D006103 1.5e-36 156.8 103 79.6
CsaV3_5G030240 Cucumis sativus L. HOM05D002231 ORTHO05D006103 1.9e-36 156.4 154 60.4
Gohir.A01G160300 Gossypium hirsutum HOM05D002231 ORTHO05D006103 1.9e-36 156.4 106 78.3
AUR62028925 Chenopodium quinoa HOM05D002231 ORTHO05D006103 2.5e-36 156.0 118 71.2
Gorai.002G183300 Gossypium raimondii HOM05D002231 ORTHO05D006103 2.5e-36 156.0 106 77.4
Medtr3g085280 Medicago truncatula HOM05D002231 ORTHO05D006103 2.5e-36 156.0 104 76.9
Oeu049136.1 Olea europaea HOM05D002231 ORTHO05D006103 4.2e-36 155.2 156 62.2
Atru.chr11.2328 Acer truncatum HOM05D002231 ORTHO05D006103 5.5e-36 154.8 144 61.8
MSTRG.8006 Avicennia marina HOM05D002231 ORTHO05D006103 5.5e-36 154.8 144 59.7
Cc11_g16940 Coffea canephora HOM05D002231 ORTHO05D006103 5.5e-36 154.8 148 60.8
Lalb_Chr23g0278101 Lupinus albus HOM05D002231 ORTHO05D006103 7.2e-36 154.5 103 75.7
RcHm_v2.0_Chr4g0430201 Rosa chinensis HOM05D002231 ORTHO05D006103 7.2e-36 154.5 103 77.7
TAR629G1028 Trochodendron aralioides HOM05D002231 ORTHO05D006103 7.2e-36 154.5 100 77.0
AUR62005623 Chenopodium quinoa HOM05D002231 ORTHO05D006103 9.4e-36 154.1 90 85.6
ClCG11G013620 Citrullus lanatus HOM05D002231 ORTHO05D006103 9.4e-36 154.1 170 58.2
Gohir.D01G147100 Gossypium hirsutum HOM05D002231 ORTHO05D006103 9.4e-36 154.1 106 77.4
Lsat_1_v5_gn_4_3541 Lactuca sativa HOM05D002231 ORTHO05D006103 9.4e-36 154.1 102 74.5
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 9.4e-36 154.1 103 78.6
Lj6g0006303 Lotus japonicus HOM05D002231 ORTHO05D006103 1.2e-35 153.7 103 78.6
SalBow1G3407 Salvia bowleyana HOM05D002231 ORTHO05D006103 1.2e-35 153.7 142 60.6
SalBow2G1775 Salvia bowleyana HOM05D002231 ORTHO05D006103 1.2e-35 153.7 142 60.6
EL10Ac6g13507 Beta vulgaris HOM05D002231 ORTHO05D006103 1.6e-35 153.3 90 86.7
Lj3C1069T6 Lonicera japonica HOM05D002231 ORTHO05D006103 1.6e-35 153.3 109 74.3
Sc11g0000450 Simmondsia chinensis HOM05D002231 ORTHO05D006103 1.6e-35 153.3 155 58.7
TWI18G1086 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 1.6e-35 153.3 104 78.8
Nn3g16455 Nelumbo nucifera HOM05D002231 ORTHO05D006103 2.1e-35 152.9 103 80.6
MSTRG.501 Avicennia marina HOM05D002231 ORTHO05D006103 2.7e-35 152.5 150 59.3
Hma1.2p1_0275F.1_g110740 Hydrangea macrophylla HOM05D002231 ORTHO05D006103 3.6e-35 152.1 110 74.5
Eucgr.B03496 Eucalyptus grandis HOM05D002231 ORTHO05D006103 4.7e-35 151.8 99 79.8
PSO017G2330 Papaver somniferum HOM05D002231 ORTHO05D006103 4.7e-35 151.8 104 75.0
TWI36G0137 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 4.7e-35 151.8 104 77.9
Aqoxy5G03366 Aquilegia oxysepala HOM05D002231 ORTHO05D006103 6.1e-35 151.4 149 59.7
arahy.Tifrunner.gnm1.ann1.4LX5KX Arachis hypogaea HOM05D002231 ORTHO05D006103 8.0e-35 151.0 103 77.7
arahy.Tifrunner.gnm1.ann1.A5UQ16 Arachis hypogaea HOM05D002231 ORTHO05D006103 8.0e-35 151.0 103 77.7
Manes.13G011701 Manihot esculenta HOM05D002231 ORTHO05D006103 8.0e-35 151.0 105 75.2
Nitab4.5_0000155g0190 Nicotiana tabacum HOM05D002231 ORTHO05D006103 1.0e-34 150.6 105 77.1
Migut.J00960 Erythranthe guttata HOM05D002231 ORTHO05D006103 1.4e-34 150.2 160 55.6
Oeu029193.1 Olea europaea HOM05D002231 ORTHO05D006103 1.8e-34 149.8 105 78.1
Potri.001G056500 Populus trichocarpa HOM05D002231 ORTHO05D006103 3.0e-34 149.1 84 88.1
PGR102G0892 Punica granatum HOM05D002231 ORTHO05D006103 3.0e-34 149.1 84 88.1
Nitab4.5_0002558g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 4.0e-34 148.7 106 74.5
Potri.003G172000 Populus trichocarpa HOM05D002231 ORTHO05D006103 4.0e-34 148.7 152 57.2
SGA_v2.0_scaffold9G04675 Striga asiatica HOM05D002231 ORTHO05D006103 4.0e-34 148.7 101 75.2
Gorai.012G176000 Gossypium raimondii HOM05D002231 ORTHO05D006103 6.8e-34 147.9 103 74.8
Gohir.D04G183000 Gossypium hirsutum HOM05D002231 ORTHO05D006103 8.8e-34 147.5 103 74.8
HanXRQChr12g0385441 Helianthus annuus HOM05D002231 ORTHO05D006103 8.8e-34 147.5 158 53.8
Nn4g22308 Nelumbo nucifera HOM05D002231 ORTHO05D006103 8.8e-34 147.5 90 82.2
FvH4_4g23720 Fragaria vesca HOM05D002231 ORTHO05D006103 1.5e-33 146.7 104 72.1
FAN07G0699 Fragaria x ananassa HOM05D002231 ORTHO05D006103 1.5e-33 146.7 104 74.0
FAN12G0590 Fragaria x ananassa HOM05D002231 ORTHO05D006103 1.5e-33 146.7 103 73.8
Gohir.A04G139800 Gossypium hirsutum HOM05D002231 ORTHO05D006103 2.6e-33 146.0 101 75.2
Lalb_Chr08g0230621 Lupinus albus HOM05D002231 ORTHO05D006103 2.6e-33 146.0 111 73.9
FAN17G0493 Fragaria x ananassa HOM05D002231 ORTHO05D005593 3.4e-33 145.6 100 75.0
FAN22G0585 Fragaria x ananassa HOM05D002231 ORTHO05D006103 4.4e-33 145.2 103 73.8
Sed0020663 Sechium edule HOM05D002231 ORTHO05D006103 4.4e-33 145.2 165 55.8
Hund25467 Selenicereus undatus HOM05D002231 ORTHO05D006103 7.5e-33 144.4 143 56.6
Sabra03G0125900 Salix brachista HOM05D002231 ORTHO05D005593 9.8e-33 144.1 152 56.6
Nitab4.5_0004003g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 1.7e-32 143.3 103 74.8
Duzib251G0325 Durio zibethinus HOM05D002231 ORTHO05D006103 2.2e-32 142.9 109 70.6
Solyc04g045580.4 Solanum lycopersicum HOM05D002231 ORTHO05D006103 2.8e-32 142.5 103 70.9
Sopen04g017470 Solanum pennellii HOM05D002231 ORTHO05D006103 2.8e-32 142.5 103 70.9
unitig_747.g21125 Utricularia gibba HOM05D002231 ORTHO05D006103 2.8e-32 142.5 103 72.8
ECA234G2919 Erigeron canadensis HOM05D002231 ORTHO05D006103 8.3e-32 141.0 83 84.3
THA.LOC104807538 Tarenaya hassleriana HOM05D002231 ORTHO05D006103 8.3e-32 141.0 124 62.1
Aa31LG7G9850 Aethionema arabicum HOM05D002231 ORTHO05D006103 1.1e-31 140.6 110 68.2
Os04g0386500 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 4.1e-31 138.7 88 76.1
Carub.0001s2592 Capsella rubella HOM05D002231 ORTHO05D006103 5.4e-31 138.3 103 68.9
Os02g0507400 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 5.4e-31 138.3 150 54.7
Peaxi162Scf00518g00424 Petunia axillaris HOM05D002231 ORTHO05D006103 5.4e-31 138.3 100 75.0
Sabra01G0040900 Salix brachista HOM05D002231 ORTHO05D006103 7.0e-31 137.9 95 76.8
AL1G40790 Arabidopsis lyrata HOM05D002231 ORTHO05D006103 1.2e-30 137.1 103 68.9
DCAR_026462 Daucus carota HOM05D002231 ORTHO05D006103 1.6e-30 136.7 177 49.2
AT1G27385 Arabidopsis thaliana HOM05D002231 ORTHO05D006103 2.0e-30 136.3 114 63.2
Sp1g23610 Schrenkiella parvula HOM05D002231 ORTHO05D006103 2.7e-30 136.0 103 68.9
Glyma.08G104500 Glycine max HOM05D002231 ORTHO05D006103 3.5e-30 135.6 99 70.7
CARHR026970 Cardamine hirsuta HOM05D002231 ORTHO05D006103 4.5e-30 135.2 103 67.0
BcaB03g13989 Brassica carinata HOM05D002231 ORTHO05D006103 5.9e-30 134.8 103 68.0
Phvul.L002246 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 5.9e-30 134.8 99 73.7
BcaC05g26552 Brassica carinata HOM05D002231 ORTHO05D006103 1.0e-29 134.0 103 68.0
BcaC06g35283 Brassica carinata HOM05D002231 ORTHO05D006103 1.0e-29 134.0 103 68.0
A07p11870 Brassica napus HOM05D002231 ORTHO05D006103 1.0e-29 134.0 103 68.0
A09p38550 Brassica napus HOM05D002231 ORTHO05D006103 1.0e-29 134.0 103 68.0
C07p17810 Brassica napus HOM05D002231 ORTHO05D006103 1.0e-29 134.0 103 68.0
BolC5t31328H Brassica oleracea HOM05D002231 ORTHO05D006103 1.0e-29 134.0 103 68.0
BolC7t42287H Brassica oleracea HOM05D002231 ORTHO05D006103 1.0e-29 134.0 103 68.0
BraA07t28971Z Brassica rapa HOM05D002231 ORTHO05D006103 1.0e-29 134.0 103 68.0
BraA09t39361Z Brassica rapa HOM05D002231 ORTHO05D006103 1.0e-29 134.0 103 68.0
Lsat_1_v5_gn_3_31041 Lactuca sativa HOM05D002231 ORTHO05D006103 1.0e-29 134.0 156 50.6
SalBow8G1223 Salvia bowleyana HOM05D002231 ORTHO05D006103 1.0e-29 134.0 153 52.3
Nitab4.5_0000067g0140 Nicotiana tabacum HOM05D002231 ORTHO05D006103 1.3e-29 133.7 131 59.5
BcaC05g26745 Brassica carinata HOM05D002231 ORTHO05D006103 1.7e-29 133.3 90 73.3
Zm00001eb085510 Zea mays HOM05D002231 ORTHO05D006103 1.7e-29 133.3 88 72.7
vmacro01059 Vaccinium macrocarpon HOM05D002231 ORTHO05D006103 2.9e-29 132.5 96 71.9
Thhalv10008813m.g Eutrema salsugineum HOM05D002231 ORTHO05D006103 8.6e-29 131.0 103 66.0
C05p26090 Brassica napus HOM05D002231 ORTHO05D006103 1.1e-28 130.6 88 72.7
Zm00001eb421060 Zea mays HOM05D002231 ORTHO05D006103 2.5e-28 129.4 103 64.1
DCAR_007004 Daucus carota HOM05D002231 ORTHO05D006103 1.4e-26 123.6 123 56.9
Cpa.g.sc808.1 Carica papaya HOM05D002231 ORTHO05D006103 3.0e-26 122.5 73 82.2
Ah.02g130890 Amaranthus hybridus HOM05D002231 ORTHO05D006103 4.0e-26 122.1 100 68.0
Lj4g0021495 Lotus japonicus HOM05D002231 ORTHO05D006103 5.7e-25 118.2 174 49.4
HanXRQChr06g0174651 Helianthus annuus HOM05D002231 ORTHO05D006103 6.3e-24 114.8 130 46.2
ECA246G2515 Erigeron canadensis HOM05D002231 ORTHO05D006103 1.8e-23 113.2 84 60.7
Pp3c15_19360 Physcomitrium patens HOM05D002231 ORTHO05D006103 5.4e-23 111.7 111 55.0
Pp3c9_19480 Physcomitrium patens HOM05D002231 ORTHO05D006103 9.2e-23 110.9 90 61.1
AagrBONN_evm.TU.Sc2ySwM_368.423 Anthoceros agrestis HOM05D002231 ORTHO05D006103 2.7e-22 109.4 83 66.3
SMO246G0027 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 4.5e-22 108.6 86 64.0
SMO364G0411 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 1.7e-21 106.7 85 64.7
Lsat_1_v5_gn_4_56001 Lactuca sativa HOM05D002231 ORTHO05D006103 1.9e-20 103.2 100 52.0
CBR_g57027 Chara braunii HOM05D002231 ORTHO05D006103 3.3e-20 102.4 84 60.7
ECA233G1565 Erigeron canadensis HOM05D002231 ORTHO05D006103 4.3e-20 102.1 100 55.0
arahy.Tifrunner.gnm1.ann1.1IJF7J Arachis hypogaea HOM05D002231 ORTHO05D006103 1.2e-19 100.5 151 45.0
HanXRQChr08g0207851 Helianthus annuus HOM05D002231 ORTHO05D006103 1.5e-17 93.6 125 44.0
arahy.Tifrunner.gnm1.ann1.RN2E3G Arachis hypogaea HOM05D002231 ORTHO05D006103 1.3e-16 90.5 153 42.5
TAR383G1026 Trochodendron aralioides HOM05D002231 ORTHO05D006103 1.9e-12 76.6 75 61.3
CDE05G2241 Ceratophyllum demersum HOM05D001859 ORTHO05D001836 1.4e-10 70.5 43 79.1
PRCOL_00004939 Prasinoderma coloniale HOM05D002231 ORTHO05D006103 2.3e-10 69.7 80 42.5
Cre02.g074700 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 1.9e-07 60.1 112 36.6
C02p58440 Brassica napus HOM05D001393 ORTHO05D032808 4.6e-06 55.5 39 64.1
TAR636G2964 Trochodendron aralioides HOM05D002231 ORTHO05D006103 4.6e-06 55.5 55 60.0


User provided reference genes

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