Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 8.5e-50 199.9 92 100.0
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 1.8e-36 155.6 93 74.2
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 3.1e-36 154.8 78 85.9
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 4.1e-36 154.5 91 73.6
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 9.1e-36 153.3 91 72.5
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 1.6e-35 152.5 87 77.0
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 2.6e-35 151.8 93 73.1
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 4.5e-35 151.0 85 77.6
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 4.5e-35 151.0 85 77.6
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 5.9e-35 150.6 78 82.1
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 1.0e-34 149.8 89 76.4
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 1.0e-34 149.8 91 74.7
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 1.3e-34 149.4 79 82.3
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 1.7e-34 149.1 91 75.8
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 1.7e-34 149.1 86 77.9
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 1.7e-34 149.1 88 75.0
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 2.9e-34 148.3 81 79.0
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 2.9e-34 148.3 77 81.8
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 2.9e-34 148.3 77 84.4
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 2.9e-34 148.3 93 72.0
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 3.8e-34 147.9 78 80.8
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 3.8e-34 147.9 87 75.9
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 5.0e-34 147.5 78 80.8
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 5.0e-34 147.5 84 77.4
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 6.5e-34 147.1 77 80.5
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 6.5e-34 147.1 91 71.4
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 8.5e-34 146.7 83 75.9
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 1.1e-33 146.4 76 81.6
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 1.1e-33 146.4 76 81.6
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 1.5e-33 146.0 84 73.8
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 1.5e-33 146.0 91 70.3
Thecc.05G219200 Theobroma cacao HOM05D007710 ORTHO05D004022 1.5e-33 146.0 77 80.5
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 1.9e-33 145.6 83 74.7
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 1.9e-33 145.6 76 80.3
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 1.9e-33 145.6 79 77.2
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 1.9e-33 145.6 79 77.2
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 1.9e-33 145.6 79 77.2
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 2.5e-33 145.2 78 79.5
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 2.5e-33 145.2 87 74.7
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 2.5e-33 145.2 90 72.2
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 2.5e-33 145.2 86 74.4
Manes.08G064400 Manihot esculenta HOM05D007710 ORTHO05D004022 3.2e-33 144.8 79 78.5
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 3.2e-33 144.8 91 68.1
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 4.2e-33 144.4 80 76.2
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 4.2e-33 144.4 91 70.3
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 5.5e-33 144.1 81 74.1
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 5.5e-33 144.1 78 78.2
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 7.2e-33 143.7 90 70.0
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 7.2e-33 143.7 80 76.2
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 9.4e-33 143.3 84 73.8
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 9.4e-33 143.3 75 80.0
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 1.2e-32 142.9 75 81.3
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 1.2e-32 142.9 85 74.1
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 1.2e-32 142.9 88 72.7
Manes.09G128500 Manihot esculenta HOM05D007710 ORTHO05D004022 1.6e-32 142.5 79 78.5
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 2.1e-32 142.1 91 70.3
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 3.6e-32 141.4 91 70.3
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 4.7e-32 141.0 85 72.9
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 6.1e-32 140.6 85 71.8
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 8.0e-32 140.2 84 72.6
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 8.0e-32 140.2 79 74.7
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 1.0e-31 139.8 78 78.2
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 1.0e-31 139.8 85 71.8
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 1.8e-31 139.0 79 75.9
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 2.3e-31 138.7 76 76.3
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 3.0e-31 138.3 76 73.7
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 5.2e-31 137.5 78 76.9
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 5.2e-31 137.5 76 76.3
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 6.7e-31 137.1 75 78.7
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 6.7e-31 137.1 77 75.3
CsaV3_2G036650 Cucumis sativus L. HOM05D007710 ORTHO05D004022 8.8e-31 136.7 78 76.9
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 1.5e-30 136.0 84 71.4
MELO3C021857.2 Cucumis melo HOM05D007710 ORTHO05D004022 2.6e-30 135.2 78 75.6
MD06G1024400 Malus domestica HOM05D007710 ORTHO05D004022 4.4e-30 134.4 91 65.9
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 1.7e-29 132.5 85 70.6
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 1.1e-28 129.8 80 71.2
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 4.1e-28 127.9 85 68.2
Rhsim03G0223400 Rhododendron simsii HOM05D007710 ORTHO05D004022 7.7e-27 123.6 136 46.3
Ah.04g156350 Amaranthus hybridus HOM05D007710 ORTHO05D004022 2.3e-23 112.1 138 45.7
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 2.4e-20 102.1 76 61.8
RcHm_v2.0_Chr2g0135851 Rosa chinensis HOM05D007710 ORTHO05D004022 2.0e-19 99.0 70 62.9
Glyma.11G108600 Glycine max HOM05D007710 ORTHO05D004022 1.0e-15 86.7 40 87.5
Hma1.2p1_0649F.1_g195210 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 2.3e-15 85.5 42 83.3
ClCG09G017200 Citrullus lanatus HOM05D007710 ORTHO05D004022 5.2e-15 84.3 186 30.1
COL.COLO4_15187 Corchorus olitorius HOM05D007710 ORTHO05D004022 2.6e-14 82.0 39 84.6
Os03g0857750 Oryza sativa ssp. japonica HOM05D007710 ORTHO05D004022 3.4e-14 81.6 42 78.6
SalBow2G0781 Salvia bowleyana HOM05D007710 ORTHO05D004022 3.4e-14 81.6 39 84.6
Sc09g0007050 Simmondsia chinensis HOM05D007710 ORTHO05D004022 9.2e-12 73.6 53 66.0
FAN01G0952 Fragaria x ananassa HOM05D002657 ORTHO05D003059 2.7e-11 72.0 52 59.6
MSTRG.6 Avicennia marina HOM05D007710 ORTHO05D004022 4.5e-11 71.2 52 65.4
QL09p021214 Quercus lobata HOM05D007710 ORTHO05D004022 7.8e-11 70.5 48 66.7
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 1.5e-09 66.2 83 43.4
ECA238G3641 Erigeron canadensis HOM05D007710 ORTHO05D004022 2.5e-09 65.5 40 65.0
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 4.3e-09 64.7 91 40.7
SalBow2G2426 Salvia bowleyana HOM05D007710 ORTHO05D004022 5.6e-09 64.3 44 63.6
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 7.3e-09 63.9 91 40.7
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 9.5e-09 63.5 88 39.8
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 1.2e-08 63.2 80 40.0
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 1.2e-08 63.2 80 40.0
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 1.6e-08 62.8 83 39.8
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 2.1e-08 62.4 93 38.7
Cc07_g08290 Coffea canephora HOM05D007646 ORTHO05D004022 2.1e-08 62.4 93 37.6
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 2.1e-08 62.4 80 40.0
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 2.8e-08 62.0 80 41.2
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 2.8e-08 62.0 80 41.2
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 2.8e-08 62.0 83 39.8
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 2.8e-08 62.0 80 38.8
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 2.8e-08 62.0 80 40.0
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 3.6e-08 61.6 83 39.8
Dinv29135 Davidia involucrata HOM05D007710 ORTHO05D004022 3.6e-08 61.6 30 83.3
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 3.6e-08 61.6 80 40.0
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 3.6e-08 61.6 89 38.2
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 4.7e-08 61.2 80 38.8
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 6.1e-08 60.8 80 38.8
Atru.chr1.1768 Acer truncatum HOM05D007646 ORTHO05D004022 8.0e-08 60.5 94 36.2
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 8.0e-08 60.5 80 40.0
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 8.0e-08 60.5 80 38.8
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 8.0e-08 60.5 80 38.8
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 1.0e-07 60.1 80 37.5
MSTRG.3534 Avicennia marina HOM05D007646 ORTHO05D004022 1.0e-07 60.1 79 39.2
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 1.0e-07 60.1 79 36.7
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 1.0e-07 60.1 93 35.5
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 1.0e-07 60.1 80 38.8
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 1.0e-07 60.1 80 40.0
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 1.4e-07 59.7 83 38.6
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 1.4e-07 59.7 80 40.0
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 1.4e-07 59.7 83 38.6
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 1.4e-07 59.7 80 38.8
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 1.8e-07 59.3 79 38.0
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 1.8e-07 59.3 79 38.0
Sp7g04020 Schrenkiella parvula HOM05D007646 ORTHO05D004022 1.8e-07 59.3 83 37.3
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 1.8e-07 59.3 80 38.8
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 2.3e-07 58.9 85 36.5
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 2.3e-07 58.9 90 35.6
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 2.3e-07 58.9 80 37.5
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 2.3e-07 58.9 85 37.6
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 2.3e-07 58.9 80 38.8
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 2.3e-07 58.9 80 38.8
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 3.0e-07 58.5 91 36.3
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 3.0e-07 58.5 90 37.8
CARHR214680 Cardamine hirsuta HOM05D007646 ORTHO05D004022 4.0e-07 58.2 80 36.2
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 5.2e-07 57.8 78 38.5
Rhsim10G0078400 Rhododendron simsii HOM05D007646 ORTHO05D004022 5.2e-07 57.8 84 35.7
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 5.2e-07 57.8 90 35.6
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 6.8e-07 57.4 80 36.2
Migut.L00480 Erythranthe guttata HOM05D007646 ORTHO05D004022 6.8e-07 57.4 80 37.5
PGSC0003DMG400010412 Solanum tuberosum HOM05D007646 ORTHO05D004022 6.8e-07 57.4 80 38.8
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 8.9e-07 57.0 87 35.6
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 8.9e-07 57.0 80 38.8
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 8.9e-07 57.0 87 35.6
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 1.2e-06 56.6 87 35.6
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 1.2e-06 56.6 87 35.6
Cpa.g.sc116.10 Carica papaya HOM05D007646 ORTHO05D004022 1.5e-06 56.2 83 37.3
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 1.5e-06 56.2 80 37.5
Pp3c20_8520 Physcomitrium patens HOM05D007646 ORTHO05D004022 2.0e-06 55.8 89 33.7
FvH4_4g24890 Fragaria vesca HOM05D007646 ORTHO05D004022 2.6e-06 55.5 80 38.8
FAN07G2610 Fragaria x ananassa HOM05D007646 ORTHO05D004022 2.6e-06 55.5 80 38.8
FAN12G1679 Fragaria x ananassa HOM05D007646 ORTHO05D004022 2.6e-06 55.5 80 38.8
FAN17G0138 Fragaria x ananassa HOM05D007646 ORTHO05D004022 2.6e-06 55.5 80 38.8
RcHm_v2.0_Chr3g0493581 Rosa chinensis HOM05D007646 ORTHO05D004022 2.6e-06 55.5 80 38.8
Cfa007863 Carpinus fangiana HOM05D007646 ORTHO05D004022 5.7e-06 54.3 102 31.4
Sc11g0008560 Simmondsia chinensis HOM05D007646 ORTHO05D004022 5.7e-06 54.3 80 35.0
GSVIVG01030896001 Vitis vinifera HOM05D007646 ORTHO05D004022 5.7e-06 54.3 90 35.6
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 7.5e-06 53.9 78 34.6
CDE06G1656 Ceratophyllum demersum HOM05D007646 ORTHO05D004022 7.5e-06 53.9 80 36.2
DCAR_010731 Daucus carota HOM05D007646 ORTHO05D004022 7.5e-06 53.9 96 33.3


User provided reference genes

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