Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0057G070 Amborella trichopoda HOM05D003935 ORTHO05D005096 2.7e-163 578.6 283 100.0
Hma1.2p1_1132F.1_g260170 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 2.5e-124 449.1 284 75.7
THA.LOC104801570 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 5.5e-124 448.0 284 75.4
CSS0046772 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 1.2e-123 446.8 284 76.8
vmacro09915 Vaccinium macrocarpon HOM05D003935 ORTHO05D005096 2.7e-123 445.7 284 75.7
PGR142G1672 Punica granatum HOM05D003935 ORTHO05D005096 3.6e-123 445.3 284 75.7
Actinidia13591 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.4e-122 443.4 284 75.4
Migut.F00500 Erythranthe guttata HOM05D003935 ORTHO05D005096 1.4e-122 443.4 284 75.4
Eucgr.K00175 Eucalyptus grandis HOM05D003935 ORTHO05D005096 2.3e-122 442.6 284 75.4
Oeu031400.2 Olea europaea HOM05D003935 ORTHO05D005096 2.3e-122 442.6 285 73.7
Hma1.2p1_0432F.1_g151940 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 5.1e-122 441.4 284 75.4
DCAR_020181 Daucus carota HOM05D003935 ORTHO05D005096 6.7e-122 441.0 284 74.6
Actinidia01047 Actinidia chinensis HOM05D003935 ORTHO05D005096 8.8e-122 440.7 284 75.0
TWI14G1423 Tripterygium wilfordii HOM05D003935 ORTHO05D005096 1.1e-121 440.3 284 74.6
Manes.06G132800 Manihot esculenta HOM05D003935 ORTHO05D005096 1.5e-121 439.9 284 74.6
Potri.001G126500 Populus trichocarpa HOM05D003935 ORTHO05D005096 2.6e-121 439.1 285 75.1
TAR374G1483 Trochodendron aralioides HOM05D003935 ORTHO05D005096 3.3e-121 438.7 284 74.3
AT5G61500 Arabidopsis thaliana HOM05D003935 ORTHO05D005096 5.7e-121 438.0 284 73.2
Sopen06g010820 Solanum pennellii HOM05D003935 ORTHO05D005096 5.7e-121 438.0 284 75.7
CAN.G330.5 Capsicum annuum HOM05D003935 ORTHO05D005096 9.7e-121 437.2 284 75.7
AL8G38190 Arabidopsis lyrata HOM05D003935 ORTHO05D005096 1.3e-120 436.8 284 73.2
CSS0045715 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 1.3e-120 436.8 284 75.4
Thhalv10004633m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 1.3e-120 436.8 285 75.1
Sp2g24700 Schrenkiella parvula HOM05D003935 ORTHO05D005096 1.3e-120 436.8 284 73.6
Solyc06g034160.3 Solanum lycopersicum HOM05D003935 ORTHO05D005096 1.3e-120 436.8 284 75.4
SGA_v2.0_scaffold44G16558 Striga asiatica HOM05D003935 ORTHO05D005096 1.3e-120 436.8 284 73.6
Dinv16851 Davidia involucrata HOM05D003935 ORTHO05D005096 1.7e-120 436.4 284 74.6
MSTRG.27208 Avicennia marina HOM05D003935 ORTHO05D005096 2.2e-120 436.0 284 73.6
CARHR275270 Cardamine hirsuta HOM05D003935 ORTHO05D005096 2.2e-120 436.0 284 73.6
Aqoxy7G00829 Aquilegia oxysepala HOM05D003935 ORTHO05D005096 2.8e-120 435.6 284 73.6
Nn6g33882 Nelumbo nucifera HOM05D003935 ORTHO05D005096 2.8e-120 435.6 284 74.3
PSO063G2499 Papaver somniferum HOM05D003935 ORTHO05D005096 3.7e-120 435.3 286 75.5
Sc10g0008570 Simmondsia chinensis HOM05D003935 ORTHO05D005096 3.7e-120 435.3 285 74.7
EL10Ac3g05885 Beta vulgaris HOM05D003935 ORTHO05D005096 4.8e-120 434.9 284 74.3
PGSC0003DMG400021594 Solanum tuberosum HOM05D003935 ORTHO05D005096 4.8e-120 434.9 284 75.0
CsaV3_6G008640 Cucumis sativus L. HOM05D003935 ORTHO05D005096 6.3e-120 434.5 284 73.6
Sed0016106 Sechium edule HOM05D003935 ORTHO05D005096 6.3e-120 434.5 284 74.3
COL.COLO4_12445 Corchorus olitorius HOM05D003935 ORTHO05D005096 8.2e-120 434.1 284 73.6
Rhsim09G0190400 Rhododendron simsii HOM05D003935 ORTHO05D005096 8.2e-120 434.1 299 71.6
QL04p034713 Quercus lobata HOM05D003935 ORTHO05D005096 1.1e-119 433.7 284 73.6
CANSAT21G2109 Cannabis sativa HOM05D003935 ORTHO05D005096 1.4e-119 433.3 284 72.9
Cpa.g.sc16.168 Carica papaya HOM05D003935 ORTHO05D005096 1.4e-119 433.3 284 73.6
Lalb_Chr19g0126281 Lupinus albus HOM05D003935 ORTHO05D005096 1.4e-119 433.3 284 72.2
AUR62002246 Chenopodium quinoa HOM05D003935 ORTHO05D005096 2.4e-119 432.6 284 73.6
Sp6g35250 Schrenkiella parvula HOM05D003935 ORTHO05D005096 2.4e-119 432.6 284 73.2
TPR.G3680 Trifolium pratense HOM05D003935 ORTHO05D005096 2.4e-119 432.6 282 72.7
MELO3C022280.2 Cucumis melo HOM05D003935 ORTHO05D005096 3.1e-119 432.2 284 73.6
Glyma.12G005700 Glycine max HOM05D003935 ORTHO05D005096 3.1e-119 432.2 283 73.5
PSO782G0781 Papaver somniferum HOM05D003935 ORTHO05D005096 3.1e-119 432.2 286 75.2
ClCG06G002480 Citrullus lanatus HOM05D003935 ORTHO05D005096 4.1e-119 431.8 284 73.2
Carub.0008s2219 Capsella rubella HOM05D003935 ORTHO05D005096 5.3e-119 431.4 284 72.9
Peaxi162Scf00304g01342 Petunia axillaris HOM05D003935 ORTHO05D005096 5.3e-119 431.4 284 73.6
Atru.chr1.845 Acer truncatum HOM05D003935 ORTHO05D005096 6.9e-119 431.0 284 72.5
Glyma.09G231000 Glycine max HOM05D003935 ORTHO05D005096 6.9e-119 431.0 284 72.9
SalBow1G3743 Salvia bowleyana HOM05D003935 ORTHO05D005096 1.2e-118 430.3 284 73.2
Thecc.01G388100 Theobroma cacao HOM05D003935 ORTHO05D005096 1.5e-118 429.9 284 72.5
Nitab4.5_0000448g0060 Nicotiana tabacum HOM05D003935 ORTHO05D005096 2.0e-118 429.5 284 73.9
THA.LOC104819415 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 2.0e-118 429.5 285 72.6
GSVIVG01018224001 Vitis vinifera HOM05D003935 ORTHO05D005096 2.0e-118 429.5 284 73.6
Thhalv10014155m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 2.6e-118 429.1 284 72.9
Cfa012922 Carpinus fangiana HOM05D003935 ORTHO05D005096 4.5e-118 428.3 284 72.2
Duzib133G0969 Durio zibethinus HOM05D003935 ORTHO05D005096 4.5e-118 428.3 285 72.3
Aa31LG11G1910 Aethionema arabicum HOM05D003935 ORTHO05D005096 5.9e-118 427.9 283 72.8
Potri.003G107000 Populus trichocarpa HOM05D003935 ORTHO05D005096 5.9e-118 427.9 286 74.1
Lalb_Chr01g0000281 Lupinus albus HOM05D003935 ORTHO05D005096 7.7e-118 427.6 282 72.0
MSTRG.8834 Avicennia marina HOM05D003935 ORTHO05D005096 1.0e-117 427.2 284 73.2
Cc02_g04470 Coffea canephora HOM05D003935 ORTHO05D005096 1.0e-117 427.2 288 71.2
Duzib138G0818 Durio zibethinus HOM05D003935 ORTHO05D005096 1.3e-117 426.8 285 73.0
Psat7g207040 Pisum sativum HOM05D003935 ORTHO05D005096 1.3e-117 426.8 282 72.0
arahy.Tifrunner.gnm1.ann1.YZL4IN Arachis hypogaea HOM05D003935 ORTHO05D005096 1.7e-117 426.4 282 72.3
Lj1C977G12 Lonicera japonica HOM05D003935 ORTHO05D005096 1.7e-117 426.4 307 68.7
Ah.07g207480 Amaranthus hybridus HOM05D003935 ORTHO05D005096 2.9e-117 425.6 284 73.2
CiPaw.14G023500 Carya illinoinensis HOM05D003935 ORTHO05D005096 2.9e-117 425.6 285 71.6
Gohir.D07G154200 Gossypium hirsutum HOM05D003935 ORTHO05D005096 1.1e-116 423.7 285 71.6
Gorai.001G176400 Gossypium raimondii HOM05D003935 ORTHO05D005096 1.1e-116 423.7 285 71.6
Medtr4g036265 Medicago truncatula HOM05D003935 ORTHO05D005096 1.1e-116 423.7 282 70.9
Sabra01G0097600 Salix brachista HOM05D003935 ORTHO05D005096 1.9e-116 422.9 285 71.9
Lj3g0013928 Lotus japonicus HOM05D003935 ORTHO05D005096 3.2e-116 422.2 285 71.9
HanXRQChr15g0485951 Helianthus annuus HOM05D003935 ORTHO05D005096 4.2e-116 421.8 284 70.4
arahy.Tifrunner.gnm1.ann1.2B4GQV Arachis hypogaea HOM05D003935 ORTHO05D005096 5.5e-116 421.4 282 71.3
Gohir.A07G148000 Gossypium hirsutum HOM05D003935 ORTHO05D005096 7.2e-116 421.0 285 70.9
BcaC06g33155 Brassica carinata HOM05D003935 ORTHO05D005096 9.4e-116 420.6 284 71.1
Gohir.D08G159150 Gossypium hirsutum HOM05D003935 ORTHO05D005096 1.2e-115 420.2 285 72.3
Gorai.004G165200 Gossypium raimondii HOM05D003935 ORTHO05D005096 1.2e-115 420.2 285 72.3
Lsat_1_v5_gn_5_9340 Lactuca sativa HOM05D003935 ORTHO05D005096 1.2e-115 420.2 284 69.4
Gohir.A08G137866 Gossypium hirsutum HOM05D003935 ORTHO05D005096 1.6e-115 419.9 285 72.3
Prupe.2G123000 Prunus persica HOM05D003935 ORTHO05D005096 2.1e-115 419.5 282 71.3
Phvul.011G006500 Phaseolus vulgaris HOM05D003935 ORTHO05D005096 6.1e-115 417.9 282 71.3
Nitab4.5_0000262g0090 Nicotiana tabacum HOM05D003935 ORTHO05D005096 8.0e-115 417.5 284 72.9
BcaB05g21604 Brassica carinata HOM05D003935 ORTHO05D005096 1.4e-114 416.8 284 72.2
VMungo1127G0071 Vigna mungo HOM05D003935 ORTHO05D005096 1.4e-114 416.8 282 70.6
FAN06G4162 Fragaria x ananassa HOM05D003935 ORTHO05D005096 1.8e-114 416.4 283 70.3
QL02p025668 Quercus lobata HOM05D003935 ORTHO05D005096 2.3e-114 416.0 284 70.8
FvH4_7g09530 Fragaria vesca HOM05D003935 ORTHO05D005096 3.0e-114 415.6 283 70.3
FAN01G1603 Fragaria x ananassa HOM05D003935 ORTHO05D005096 3.0e-114 415.6 283 70.0
FAN06G5089 Fragaria x ananassa HOM05D003935 ORTHO05D005096 3.0e-114 415.6 283 70.3
Nitab4.5_0001267g0110 Nicotiana tabacum HOM05D003935 ORTHO05D005096 3.9e-114 415.2 283 71.0
FAN03G1633 Fragaria x ananassa HOM05D003935 ORTHO05D005096 5.2e-114 414.8 283 70.3
FAN10G2569 Fragaria x ananassa HOM05D003935 ORTHO05D005096 5.2e-114 414.8 283 70.3
FAN10G4028 Fragaria x ananassa HOM05D003935 ORTHO05D005096 5.2e-114 414.8 283 70.3
BolC7t45044H Brassica oleracea HOM05D003935 ORTHO05D005096 8.8e-114 414.1 283 70.7
MD02G1218100 Malus domestica HOM05D003935 ORTHO05D005096 1.5e-113 413.3 282 70.2
C07p45210 Brassica napus HOM05D003935 ORTHO05D005096 2.6e-113 412.5 283 70.7
Haze_21276 Corylus avellana HOM05D003935 ORTHO05D005096 5.7e-113 411.4 292 69.5
Rhsim03G0165100 Rhododendron simsii HOM05D003935 ORTHO05D005096 5.7e-113 411.4 308 66.9
arahy.Tifrunner.gnm1.ann1.16SP4W Arachis hypogaea HOM05D003935 ORTHO05D005096 7.4e-113 411.0 282 69.5
BolC2t06285H Brassica oleracea HOM05D003935 ORTHO05D005096 9.7e-113 410.6 285 71.6
Ciclev10005442m.g Citrus clementina HOM05D003935 ORTHO05D005096 3.7e-112 408.7 289 67.1
HanXRQChr16g0512861 Helianthus annuus HOM05D003935 ORTHO05D005096 4.8e-112 408.3 284 68.7
RcHm_v2.0_Chr1g0346321 Rosa chinensis HOM05D003935 ORTHO05D005096 6.3e-112 407.9 284 70.1
BcaC03g13194 Brassica carinata HOM05D003935 ORTHO05D005096 1.1e-111 407.1 283 71.4
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 1.1e-111 407.1 283 71.4
unitig_37.g12492 Utricularia gibba HOM05D003935 ORTHO05D005096 1.1e-111 407.1 284 71.1
arahy.Tifrunner.gnm1.ann1.9TCX0P Arachis hypogaea HOM05D003935 ORTHO05D005096 3.1e-111 405.6 282 69.9
Mapoly0003s0208 Marchantia polymorpha HOM05D003935 ORTHO05D005096 2.0e-110 402.9 289 69.9
BraA02t04926Z Brassica rapa HOM05D003935 ORTHO05D005096 3.2e-108 395.6 282 69.5
Sabra03G0073800 Salix brachista HOM05D003935 ORTHO05D005096 9.4e-108 394.0 352 59.4
Hund04562 Selenicereus undatus HOM05D003935 ORTHO05D005096 2.7e-107 392.5 284 67.6
CDE04G2838 Ceratophyllum demersum HOM05D003935 ORTHO05D005096 1.2e-105 387.1 274 68.6
Pp3c8_11900 Physcomitrium patens HOM05D003935 ORTHO05D005096 1.2e-105 387.1 283 67.5
Aa31LG3G18800 Aethionema arabicum HOM05D003935 ORTHO05D005096 2.0e-105 386.3 284 68.3
BraA03t13837Z Brassica rapa HOM05D003935 ORTHO05D005096 9.7e-105 384.0 282 67.4
A03p47100 Brassica napus HOM05D003935 ORTHO05D005096 2.8e-104 382.5 282 67.0
ECA232G4201 Erigeron canadensis HOM05D003935 ORTHO05D005096 3.1e-103 379.0 263 68.4
CiPaw.07G237000 Carya illinoinensis HOM05D003935 ORTHO05D005096 1.7e-101 373.2 296 63.5
Ca_12623_v3 Cicer arietinum L. HOM05D003935 ORTHO05D005096 5.0e-101 371.7 282 64.9
Actinidia24986 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.1e-100 370.5 237 75.5
Haze_02753 Corylus avellana HOM05D003935 ORTHO05D005096 6.8e-98 361.3 433 46.9
Os01g0200000 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 4.8e-96 355.1 287 63.1
SMO134G0003 Selaginella moellendorffii HOM05D003935 ORTHO05D005096 7.0e-95 351.3 284 61.3
Lsat_1_v5_gn_9_51820 Lactuca sativa HOM05D003935 ORTHO05D005096 9.1e-95 350.9 285 63.2
Zm00001eb391210 Zea mays HOM05D003935 ORTHO05D005096 8.6e-93 344.4 284 63.0
BcaC06g33158 Brassica carinata HOM05D003935 ORTHO05D005096 1.9e-84 316.6 229 67.7
AUR62015457 Chenopodium quinoa HOM05D003935 ORTHO05D005096 1.4e-82 310.5 215 70.7
AagrBONN_evm.TU.Sc2ySwM_369.216 Anthoceros agrestis HOM05D003935 ORTHO05D005096 2.7e-70 269.6 270 51.1
Dinv06578 Davidia involucrata HOM05D003935 ORTHO05D005096 3.5e-70 269.2 174 74.7
Nitab4.5_0001358g0020 Nicotiana tabacum HOM05D003935 ORTHO05D005096 1.7e-69 266.9 173 72.8
MD07G1099100 Malus domestica HOM05D003935 ORTHO05D005096 2.3e-66 256.5 191 64.9
Cre02.g102350 Chlamydomonas reinhardtii HOM05D003935 ORTHO05D005096 3.5e-62 242.7 288 45.5
MCO14G260 Micromonas commoda HOM05D003935 ORTHO05D005096 6.6e-61 238.4 272 47.4
SEGI_20183 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 1.2e-59 234.2 169 66.9
CBR_g28076 Chara braunii HOM05D003935 ORTHO05D000002 8.1e-59 231.5 224 53.6
Nn051s41922 Nelumbo nucifera HOM05D003935 ORTHO05D005096 9.6e-52 208.0 151 68.2
Nn1g09078 Nelumbo nucifera HOM05D003935 ORTHO05D005096 9.6e-52 208.0 151 68.2
Os10g0560450 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 7.8e-46 188.3 184 56.0
Zm00001eb003720 Zea mays HOM05D003935 ORTHO05D005096 1.3e-45 187.6 113 77.0
Zm00001eb078430 Zea mays HOM05D003935 ORTHO05D005096 1.3e-45 187.6 113 77.0
arahy.Tifrunner.gnm1.ann1.VY970J Arachis hypogaea HOM05D003935 ORTHO05D005096 1.7e-45 187.2 133 66.9
PRCOL_00004022 Prasinoderma coloniale HOM05D003935 ORTHO05D005096 5.1e-45 185.7 274 39.4
Zm00001eb363440 Zea mays HOM05D003935 ORTHO05D005096 1.1e-44 184.5 113 76.1
Nitab4.5_0001358g0040 Nicotiana tabacum HOM05D003935 ORTHO05D001473 2.5e-44 183.3 111 77.5
Zm00001eb216570 Zea mays HOM05D003935 ORTHO05D005096 3.3e-44 183.0 130 69.2
Rhsim01G0073400 Rhododendron simsii HOM05D003935 ORTHO05D005096 9.6e-44 181.4 150 64.7
Haze_27326 Corylus avellana HOM05D003935 ORTHO05D005096 3.6e-43 179.5 279 36.2
CsaV3_4G004080 Cucumis sativus L. HOM05D003935 ORTHO05D044846 7.6e-41 171.8 262 39.3
BcaB05g21605 Brassica carinata HOM05D003935 ORTHO05D005096 1.3e-40 171.0 136 63.2
Rhsim06G0236800 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.7e-40 170.6 143 62.2
Rhsim11G0131000 Rhododendron simsii HOM05D003935 ORTHO05D005096 9.3e-39 164.9 180 53.3
AL7G47000 Arabidopsis lyrata HOM05D003935 ORTHO05D003430 1.5e-33 147.5 116 60.3
arahy.Tifrunner.gnm1.ann1.XHAQ77 Arachis hypogaea HOM05D003935 ORTHO05D005096 7.6e-33 145.2 153 49.7
MELO3C032833.2 Cucumis melo HOM05D003935 ORTHO05D044846 9.9e-33 144.8 282 34.8
BcaB01g00746 Brassica carinata HOM05D003935 ORTHO05D005096 7.9e-30 135.2 108 63.0
Rhsim06G0096100 Rhododendron simsii HOM05D003935 ORTHO05D005096 6.7e-29 132.1 117 61.5
Lj2A404G32 Lonicera japonica HOM05D000092 ORTHO05D000042 1.6e-27 127.5 257 30.7
A09p20840 Brassica napus HOM05D000772 ORTHO05D003239 4.9e-24 115.9 80 71.2
BraA09t37687Z Brassica rapa HOM05D000772 ORTHO05D003239 4.9e-24 115.9 80 71.2
CBR_g28077 Chara braunii HOM05D003935 ORTHO05D005096 3.2e-23 113.2 72 69.4
BcaC04g19029 Brassica carinata HOM05D003935 ORTHO05D005096 2.7e-22 110.2 113 54.9
SEGI_32586 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 1.8e-21 107.5 68 75.0
SEGI_13739 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 5.1e-21 105.9 71 70.4
MD07G1099000 Malus domestica HOM05D003935 ORTHO05D005096 5.7e-20 102.4 60 75.0
arahy.Tifrunner.gnm1.ann1.W2J7UU Arachis hypogaea HOM05D003935 ORTHO05D023770 2.0e-17 94.0 53 81.1
C03p26610 Brassica napus HOM05D003935 ORTHO05D023770 5.0e-16 89.4 53 77.4
Actinidia10778 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.9e-15 87.4 91 58.2
SalBow2G0135 Salvia bowleyana HOM05D003935 ORTHO05D357983 3.3e-12 76.6 60 60.0
Lj9A23G20 Lonicera japonica HOM05D000092 ORTHO05D000042 1.3e-11 74.7 76 43.4
Rhsim12G0075300 Rhododendron simsii HOM05D016728 ORTHO05D338590 7.7e-09 65.5 103 43.7
BcaC03g17887 Brassica carinata HOM05D003935 ORTHO05D005096 3.8e-08 63.2 43 67.4
Atru.chr2.3021 Acer truncatum HOM05D003935 ORTHO05D052568 7.2e-07 58.9 51 60.8
Zm00001eb395010 Zea mays HOM05D034860 ORTHO05D442630 9.4e-07 58.5 36 66.7
BcaC02g10492 Brassica carinata HOM05D036142 ORTHO05D023770 2.1e-06 57.4 67 47.8
C04p28240 Brassica napus HOM05D036142 ORTHO05D023770 2.1e-06 57.4 67 47.8
BolC4t24369H Brassica oleracea HOM05D036142 ORTHO05D023770 2.1e-06 57.4 67 47.8
Glyma.12G161000 Glycine max HOM05D000557 ORTHO05D212538 2.1e-06 57.4 46 56.5


User provided reference genes

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