Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0057G042 Amborella trichopoda HOM05D000104 ORTHO05D013430 2.4e-113 412.1 204 100.0
PSO384G1113 Papaver somniferum HOM05D000104 ORTHO05D008354 1.1e-12 77.8 62 61.3
PSO170G6209 Papaver somniferum HOM05D000104 ORTHO05D008354 4.1e-12 75.9 62 59.7
PSO407G0156 Papaver somniferum HOM05D000104 ORTHO05D008354 5.3e-12 75.5 62 59.7
Aqoxy5G04143 Aquilegia oxysepala HOM05D000104 ORTHO05D008354 7.0e-12 75.1 61 60.7
PSO384G0152 Papaver somniferum HOM05D000104 ORTHO05D008354 7.0e-12 75.1 62 59.7
AUR62004136 Chenopodium quinoa HOM05D000104 ORTHO05D008354 9.1e-12 74.7 59 59.3
TAR503G0004 Trochodendron aralioides HOM05D000104 ORTHO05D008354 9.1e-12 74.7 62 59.7
MBI04_g09528_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D008354 1.6e-11 73.9 61 62.3
Nn1g00931 Nelumbo nucifera HOM05D000104 ORTHO05D008354 2.7e-11 73.2 62 62.9
EL10Ac1g00807 Beta vulgaris HOM05D000104 ORTHO05D008354 1.0e-10 71.2 57 57.9
PSO782G4873 Papaver somniferum HOM05D000104 ORTHO05D013430 3.8e-10 69.3 62 54.8
CDE11G0513 Ceratophyllum demersum HOM05D000104 ORTHO05D008354 5.0e-10 68.9 61 57.4
Lj7C540T8 Lonicera japonica HOM05D000104 ORTHO05D008354 6.5e-10 68.6 60 56.7
PGSC0003DMG400025981 Solanum tuberosum HOM05D000104 ORTHO05D008354 6.5e-10 68.6 61 57.4
Peaxi162Scf00377g00830 Petunia axillaris HOM05D000104 ORTHO05D008354 8.5e-10 68.2 69 53.6
Sopen01g036380 Solanum pennellii HOM05D000104 ORTHO05D008354 8.5e-10 68.2 61 57.4
Migut.B01564 Erythranthe guttata HOM05D000104 ORTHO05D013430 1.5e-09 67.4 68 51.5
MD07G1098400 Malus domestica HOM05D000104 ORTHO05D008354 1.5e-09 67.4 61 54.1
PGR004G1640 Punica granatum HOM05D000104 ORTHO05D008354 1.5e-09 67.4 65 53.8
Thecc.01G387600 Theobroma cacao HOM05D000104 ORTHO05D008354 1.5e-09 67.4 61 54.1
Dinv44094 Davidia involucrata HOM05D000104 ORTHO05D008354 1.9e-09 67.0 61 55.7
Prupe.2G122400 Prunus persica HOM05D000104 ORTHO05D008354 1.9e-09 67.0 61 54.1
Zm00001eb404510 Zea mays HOM05D000104 ORTHO05D008354 1.9e-09 67.0 57 50.9
Solyc01g090650.1 Solanum lycopersicum HOM05D000104 ORTHO05D008354 2.5e-09 66.6 61 55.7
SalBow5G1524 Salvia bowleyana HOM05D000104 ORTHO05D008354 3.2e-09 66.2 73 46.6
GSVIVG01018218001 Vitis vinifera HOM05D000104 ORTHO05D008354 3.2e-09 66.2 61 50.8
DCAR_032106 Daucus carota HOM05D000104 ORTHO05D008354 5.5e-09 65.5 59 50.8
ECA236G2937 Erigeron canadensis HOM05D000104 ORTHO05D008354 5.5e-09 65.5 62 50.0
Gohir.D08G158800 Gossypium hirsutum HOM05D000104 ORTHO05D008354 5.5e-09 65.5 61 54.1
CANSAT21G1228 Cannabis sativa HOM05D000104 ORTHO05D008354 7.2e-09 65.1 61 54.1
Cc02_g24760 Coffea canephora HOM05D000104 ORTHO05D008354 7.2e-09 65.1 62 51.6
Duzib133G0313 Durio zibethinus HOM05D000104 ORTHO05D008354 1.2e-08 64.3 61 50.8
HanXRQChr06g0168811 Helianthus annuus HOM05D000104 ORTHO05D008354 1.2e-08 64.3 62 51.6
RcHm_v2.0_Chr1g0346091 Rosa chinensis HOM05D000104 ORTHO05D008354 1.2e-08 64.3 61 49.2
Hund17069 Selenicereus undatus HOM05D000104 ORTHO05D008354 1.2e-08 64.3 74 50.0
Aa31LG1G26570 Aethionema arabicum HOM05D000104 ORTHO05D008354 2.1e-08 63.5 61 47.5
FAN06G0717 Fragaria x ananassa HOM05D000104 ORTHO05D008354 2.1e-08 63.5 60 51.7
FAN06G1402 Fragaria x ananassa HOM05D000104 ORTHO05D008354 2.1e-08 63.5 60 51.7
Manes.04G038200 Manihot esculenta HOM05D000104 ORTHO05D008354 2.1e-08 63.5 61 49.2
HPP92_022464 Vanilla planifolia HOM05D000104 ORTHO05D008354 2.1e-08 63.5 60 53.3
COL.COLO4_12448 Corchorus olitorius HOM05D000104 ORTHO05D008354 2.7e-08 63.2 60 50.0
FAN10G0005 Fragaria x ananassa HOM05D000104 ORTHO05D008354 2.7e-08 63.2 60 51.7
Gorai.004G164900 Gossypium raimondii HOM05D000104 ORTHO05D008354 2.7e-08 63.2 61 52.5
Haze_02745 Corylus avellana HOM05D000104 ORTHO05D013430 3.6e-08 62.8 61 49.2
Nitab4.5_0003110g0070 Nicotiana tabacum HOM05D000104 ORTHO05D008354 3.6e-08 62.8 70 48.6
Nitab4.5_0004415g0060 Nicotiana tabacum HOM05D000104 ORTHO05D008354 3.6e-08 62.8 61 54.1
Sabra14G0041300 Salix brachista HOM05D000104 ORTHO05D008354 3.6e-08 62.8 64 48.4
Lalb_Chr03g0040101 Lupinus albus HOM05D000104 ORTHO05D008354 4.7e-08 62.4 62 50.0
THA.LOC104802482 Tarenaya hassleriana HOM05D000104 ORTHO05D008354 4.7e-08 62.4 61 47.5
FvH4_7g09450 Fragaria vesca HOM05D000104 ORTHO05D008354 8.0e-08 61.6 60 50.0
SGA_v2.0_scaffold153G36942 Striga asiatica HOM05D000104 ORTHO05D008354 1.0e-07 61.2 62 51.6
FAN10G3495 Fragaria x ananassa HOM05D000104 ORTHO05D008354 1.4e-07 60.8 64 46.9
Potri.014G056700 Populus trichocarpa HOM05D000104 ORTHO05D008354 1.4e-07 60.8 64 48.4
CARHR140240 Cardamine hirsuta HOM05D000104 ORTHO05D008354 1.8e-07 60.5 72 43.1
Medtr7g039320 Medicago truncatula HOM05D000104 ORTHO05D008354 1.8e-07 60.5 61 47.5
Medtr7g045502 Medicago truncatula HOM05D000104 ORTHO05D013430 1.8e-07 60.5 61 47.5
Phvul.008G141500 Phaseolus vulgaris HOM05D000104 ORTHO05D008354 1.8e-07 60.5 62 50.0
Sp4g27050 Schrenkiella parvula HOM05D000104 ORTHO05D008354 1.8e-07 60.5 61 45.9
Thhalv10001305m.g Eutrema salsugineum HOM05D000104 ORTHO05D008354 2.3e-07 60.1 61 44.3
Lj1g0027884 Lotus japonicus HOM05D000104 ORTHO05D008354 2.3e-07 60.1 62 53.2
QL04p034775 Quercus lobata HOM05D000104 ORTHO05D008354 2.3e-07 60.1 82 43.9
AL4G44080 Arabidopsis lyrata HOM05D000104 ORTHO05D008354 3.0e-07 59.7 59 45.8
arahy.Tifrunner.gnm1.ann1.G09REB Arachis hypogaea HOM05D000104 ORTHO05D008354 3.0e-07 59.7 78 41.0
Glyma.01G073400 Glycine max HOM05D000104 ORTHO05D008354 3.0e-07 59.7 61 49.2
Lsat_1_v5_gn_7_11220 Lactuca sativa HOM05D000104 ORTHO05D008354 3.0e-07 59.7 70 47.1
Ciclev10018815m.g Citrus clementina HOM05D000104 ORTHO05D008354 4.0e-07 59.3 73 41.1
TPR.G39130 Trifolium pratense HOM05D000104 ORTHO05D013430 4.0e-07 59.3 59 52.5
MELO3C022279.2 Cucumis melo HOM05D000104 ORTHO05D008354 5.2e-07 58.9 60 51.7
Oeu009614.2 Olea europaea HOM05D000104 ORTHO05D008354 5.2e-07 58.9 61 49.2
AT2G44980 Arabidopsis thaliana HOM05D000104 ORTHO05D008354 1.2e-06 57.8 61 42.6
CSS0013679 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D008354 1.2e-06 57.8 60 51.7
arahy.Tifrunner.gnm1.ann1.195NUB Arachis hypogaea HOM05D000104 ORTHO05D008354 1.5e-06 57.4 78 41.0
Sed0015521 Sechium edule HOM05D000104 ORTHO05D008354 1.5e-06 57.4 61 47.5
Ca_07352_v3 Cicer arietinum L. HOM05D000104 ORTHO05D008354 2.0e-06 57.0 60 50.0
BraA05t19483Z Brassica rapa HOM05D000104 ORTHO05D008354 3.4e-06 56.2 61 42.6
Rhsim07G0033300 Rhododendron simsii HOM05D001240 ORTHO05D008354 3.4e-06 56.2 63 49.2
C04p05940 Brassica napus HOM05D000104 ORTHO05D008354 4.4e-06 55.8 61 44.3
BolC4t22225H Brassica oleracea HOM05D000104 ORTHO05D008354 4.4e-06 55.8 61 44.3
Atru.chr5.195 Acer truncatum HOM05D000104 ORTHO05D008354 9.8e-06 54.7 63 46.0


User provided reference genes

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