Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0057G033 Amborella trichopoda HOM05D002505 ORTHO05D006559 4.6e-250 867.5 448 100.0
TAR626G1844 Trochodendron aralioides HOM05D002505 ORTHO05D006559 6.1e-101 372.1 466 52.6
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 8.2e-98 361.7 440 51.6
CSS0039073 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 3.6e-93 346.3 396 55.8
Nn4g25029 Nelumbo nucifera HOM05D002505 ORTHO05D006559 1.4e-92 344.4 437 52.6
Actinidia12750 Actinidia chinensis HOM05D002505 ORTHO05D006559 6.7e-84 315.5 384 54.2
TWI59G0446 Tripterygium wilfordii HOM05D002505 ORTHO05D006559 6.7e-84 315.5 424 47.4
vmacro00789 Vaccinium macrocarpon HOM05D002505 ORTHO05D006559 1.3e-82 311.2 404 50.0
CSS0016681 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 3.7e-82 309.7 411 49.1
MSTRG.14571 Avicennia marina HOM05D002505 ORTHO05D006559 7.0e-81 305.4 388 48.7
Rhsim06G0244600 Rhododendron simsii HOM05D002505 ORTHO05D006559 9.1e-81 305.1 416 49.3
Rhsim09G0088500 Rhododendron simsii HOM05D002505 ORTHO05D006559 9.1e-81 305.1 427 47.5
Duzib168G0650 Durio zibethinus HOM05D002505 ORTHO05D006559 1.6e-80 304.3 403 47.9
Oeu019749.1 Olea europaea HOM05D002505 ORTHO05D006559 1.1e-78 298.1 381 51.4
Gohir.A13G207000 Gossypium hirsutum HOM05D002505 ORTHO05D006559 3.2e-78 296.6 458 45.0
Gohir.D13G211600 Gossypium hirsutum HOM05D002505 ORTHO05D006559 5.5e-78 295.8 403 46.4
Gorai.013G241700 Gossypium raimondii HOM05D002505 ORTHO05D006559 1.2e-77 294.7 403 46.2
Sc18g0006950 Simmondsia chinensis HOM05D002505 ORTHO05D006559 1.6e-77 294.3 406 50.2
ClCG07G010710 Citrullus lanatus HOM05D002505 ORTHO05D006559 2.7e-77 293.5 440 45.0
Cpa.g.sc77.87 Carica papaya HOM05D002505 ORTHO05D006559 8.0e-77 292.0 420 45.2
CiPaw.15G113000 Carya illinoinensis HOM05D002505 ORTHO05D006559 3.0e-76 290.0 377 48.8
CDE05G0972 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 5.2e-76 289.3 460 43.5
Thecc.09G195000 Theobroma cacao HOM05D002505 ORTHO05D006559 6.8e-76 288.9 312 56.4
CsaV3_4G007590 Cucumis sativus L. HOM05D002505 ORTHO05D006559 5.7e-75 285.8 461 41.6
Eucgr.D02598 Eucalyptus grandis HOM05D002505 ORTHO05D006559 1.7e-74 284.3 391 46.8
Cc05_g16590 Coffea canephora HOM05D002505 ORTHO05D006559 2.2e-74 283.9 345 54.5
arahy.Tifrunner.gnm1.ann1.C6HHUS Arachis hypogaea HOM05D002505 ORTHO05D006559 2.8e-74 283.5 422 47.2
Phvul.006G073200 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 4.8e-74 282.7 410 47.6
PGR102G1955 Punica granatum HOM05D002505 ORTHO05D006559 8.3e-74 282.0 395 47.3
MELO3C016182.2 Cucumis melo HOM05D002505 ORTHO05D006559 1.8e-73 280.8 416 45.2
SGA_v2.0_scaffold49G18207 Striga asiatica HOM05D002505 ORTHO05D006559 1.8e-73 280.8 380 50.3
GSVIVG01031552001 Vitis vinifera HOM05D002505 ORTHO05D006559 2.0e-72 277.3 183 73.8
PGSC0003DMG400022499 Solanum tuberosum HOM05D002505 ORTHO05D006559 2.7e-72 276.9 458 43.0
arahy.Tifrunner.gnm1.ann1.GJQ7VP Arachis hypogaea HOM05D002505 ORTHO05D006559 1.3e-71 274.6 423 46.1
Peaxi162Scf00225g00129 Petunia axillaris HOM05D002505 ORTHO05D006559 1.3e-71 274.6 332 52.4
Ah.09g227860 Amaranthus hybridus HOM05D002505 ORTHO05D006559 2.9e-71 273.5 388 47.2
Phvul.006G122700 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 5.0e-71 272.7 339 51.9
Hund09330 Selenicereus undatus HOM05D002505 ORTHO05D006559 5.0e-71 272.7 430 44.9
Dinv17234 Davidia involucrata HOM05D002505 ORTHO05D006559 8.5e-71 271.9 380 48.9
Potri.015G137000 Populus trichocarpa HOM05D002505 ORTHO05D006559 1.1e-70 271.6 453 42.8
Sopen01g041610 Solanum pennellii HOM05D002505 ORTHO05D006559 1.1e-70 271.6 377 47.7
Atru.chr3.1220 Acer truncatum HOM05D002505 ORTHO05D006559 1.9e-70 270.8 456 41.7
CAN.G134.186 Capsicum annuum HOM05D002505 ORTHO05D006559 1.9e-70 270.8 325 53.8
Lj6g0017559 Lotus japonicus HOM05D002505 ORTHO05D006559 1.9e-70 270.8 468 42.9
Sed0021026 Sechium edule HOM05D002505 ORTHO05D006559 1.9e-70 270.8 454 43.4
Solyc01g098030.4 Solanum lycopersicum HOM05D002505 ORTHO05D006559 3.2e-70 270.0 371 49.3
MD10G1217100 Malus domestica HOM05D002505 ORTHO05D006559 4.2e-70 269.6 495 42.0
AUR62011379 Chenopodium quinoa HOM05D002505 ORTHO05D006559 9.4e-70 268.5 446 43.0
Glyma.09G030100 Glycine max HOM05D002505 ORTHO05D006559 1.6e-69 267.7 389 47.8
arahy.Tifrunner.gnm1.ann1.91B0ED Arachis hypogaea HOM05D002505 ORTHO05D006559 2.1e-69 267.3 414 45.7
FAN16G0440 Fragaria x ananassa HOM05D002505 ORTHO05D006559 2.7e-69 266.9 431 46.4
Lalb_Chr20g0120281 Lupinus albus HOM05D002505 ORTHO05D006559 2.7e-69 266.9 470 42.3
Prupe.4G127000 Prunus persica HOM05D002505 ORTHO05D006559 2.7e-69 266.9 376 50.0
Atru.chr1.1039 Acer truncatum HOM05D002505 ORTHO05D006559 4.7e-69 266.2 391 45.3
HPP92_002279 Vanilla planifolia HOM05D002505 ORTHO05D006559 4.7e-69 266.2 345 51.6
Nitab4.5_0002840g0110 Nicotiana tabacum HOM05D002505 ORTHO05D006559 1.8e-68 264.2 317 54.6
FAN21G2970 Fragaria x ananassa HOM05D002505 ORTHO05D006559 2.3e-68 263.8 425 44.7
MD05G1239100 Malus domestica HOM05D002505 ORTHO05D006559 3.0e-68 263.5 469 42.2
Psat4g091000 Pisum sativum HOM05D002505 ORTHO05D006559 3.0e-68 263.5 379 47.0
Ciclev10019766m.g Citrus clementina HOM05D002505 ORTHO05D006559 2.0e-67 260.8 381 48.6
RcHm_v2.0_Chr5g0023231 Rosa chinensis HOM05D002505 ORTHO05D006559 2.0e-67 260.8 369 48.2
Migut.H01653 Erythranthe guttata HOM05D002505 ORTHO05D006559 3.4e-67 260.0 329 51.4
EL10Ac5g10510 Beta vulgaris HOM05D002505 ORTHO05D006559 4.4e-67 259.6 445 40.4
FvH4_3g14000 Fragaria vesca HOM05D002505 ORTHO05D006559 4.4e-67 259.6 381 47.2
FAN25G1470 Fragaria x ananassa HOM05D002505 ORTHO05D006559 5.7e-67 259.2 409 46.7
Lj1C206G15 Lonicera japonica HOM05D002505 ORTHO05D006559 1.7e-66 257.7 173 70.5
FAN11G2806 Fragaria x ananassa HOM05D002505 ORTHO05D006559 2.8e-66 256.9 304 52.3
Ca_18602_v3 Cicer arietinum L. HOM05D002505 ORTHO05D006559 3.7e-66 256.5 444 41.9
PSO017G2893 Papaver somniferum HOM05D002505 ORTHO05D006559 4.8e-66 256.1 468 39.5
PSO170G3666 Papaver somniferum HOM05D002505 ORTHO05D006559 8.3e-66 255.4 478 39.5
Manes.08G161700 Manihot esculenta HOM05D002505 ORTHO05D006559 2.4e-65 253.8 392 44.4
VMungo1309G1878 Vigna mungo HOM05D002505 ORTHO05D006559 5.4e-65 252.7 333 50.8
Zm00001eb060430 Zea mays HOM05D002505 ORTHO05D006559 7.0e-65 252.3 377 45.1
VMungo0540G1128 Vigna mungo HOM05D002505 ORTHO05D006559 5.9e-64 249.2 364 48.9
CANSAT21G0880 Cannabis sativa HOM05D002505 ORTHO05D006559 5.0e-63 246.1 383 45.7
Nitab4.5_0002361g0170 Nicotiana tabacum HOM05D002505 ORTHO05D006559 5.0e-63 246.1 288 53.8
Sabra15G0148600 Salix brachista HOM05D002505 ORTHO05D006559 4.2e-62 243.0 459 38.8
BraA06t23318Z Brassica rapa HOM05D001023 ORTHO05D006559 5.5e-62 242.7 426 40.6
AUR62016680 Chenopodium quinoa HOM05D002505 ORTHO05D006559 5.5e-62 242.7 383 44.9
Lsat_1_v5_gn_5_3041 Lactuca sativa HOM05D002505 ORTHO05D006559 1.2e-61 241.5 450 42.4
CDE02G1608 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 2.1e-61 240.7 299 48.5
BcaB02g10898 Brassica carinata HOM05D002505 ORTHO05D006559 8.0e-61 238.8 377 44.0
Sp1g40180 Schrenkiella parvula HOM05D002505 ORTHO05D006559 2.3e-60 237.3 404 40.6
ECA246G4077 Erigeron canadensis HOM05D002505 ORTHO05D006559 3.0e-60 236.9 480 39.6
Aqoxy1G00117 Aquilegia oxysepala HOM05D002505 ORTHO05D006559 5.2e-60 236.1 470 39.8
AT1G53645 Arabidopsis thaliana HOM05D002505 ORTHO05D006559 8.9e-60 235.3 426 40.4
CARHR043910 Cardamine hirsuta HOM05D002505 ORTHO05D006559 1.2e-59 235.0 491 37.7
AL1G62310 Arabidopsis lyrata HOM05D002505 ORTHO05D006559 1.5e-59 234.6 426 39.7
Carub.0001s4291 Capsella rubella HOM05D002505 ORTHO05D006559 1.3e-58 231.5 445 38.2
Os06g0664400 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D006559 4.9e-58 229.6 443 40.4
Medtr8g078230 Medicago truncatula HOM05D002505 ORTHO05D006559 6.3e-58 229.2 401 44.4
A06p00890 Brassica napus HOM05D001023 ORTHO05D006559 1.8e-57 227.6 462 37.2
Thhalv10011382m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 5.4e-57 226.1 452 37.6
C06p09440 Brassica napus HOM05D001023 ORTHO05D006559 2.0e-56 224.2 415 38.1
SHI32899 Sapria himalayana HOM05D002505 ORTHO05D006559 7.8e-56 222.2 389 41.1
BolC6t36013H Brassica oleracea HOM05D001023 ORTHO05D006559 1.7e-55 221.1 418 38.0
AUR62002958 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.7e-55 221.1 410 39.3
BcaC08g43545 Brassica carinata HOM05D002505 ORTHO05D006559 3.9e-55 219.9 418 38.0
HanXRQChr05g0159341 Helianthus annuus HOM05D002505 ORTHO05D006559 9.5e-54 215.3 275 47.3
AUR62007763 Chenopodium quinoa HOM05D002505 ORTHO05D006559 4.7e-53 213.0 397 39.5
THA.LOC104822601 Tarenaya hassleriana HOM05D002505 ORTHO05D006559 2.3e-52 210.7 382 39.0
DCAR_009664 Daucus carota HOM05D002505 ORTHO05D006559 1.2e-51 208.4 364 41.8
BcaB07g33312 Brassica carinata HOM05D002505 ORTHO05D006559 4.4e-51 206.5 383 39.7
Aa31LG10G1650 Aethionema arabicum HOM05D002505 ORTHO05D006559 1.7e-50 204.5 491 35.4
Haze_18498 Corylus avellana HOM05D002505 ORTHO05D006559 1.5e-46 191.4 311 46.3
unitig_21.g20249 Utricularia gibba HOM05D002505 ORTHO05D006559 7.5e-43 179.1 216 44.4
QL04p094522 Quercus lobata HOM05D002505 ORTHO05D000632 9.8e-43 178.7 323 44.9
BolC6t36693H Brassica oleracea HOM05D002505 ORTHO05D006559 1.6e-40 171.4 296 41.6
Ah.13g066500 Amaranthus hybridus HOM05D002505 ORTHO05D006559 3.9e-39 166.8 314 42.0
CSS0015020 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 1.6e-37 161.4 359 41.2
Glyma.15G135900 Glycine max HOM05D002505 ORTHO05D006559 2.4e-33 147.5 116 60.3
C06p15180 Brassica napus HOM05D002505 ORTHO05D006559 7.1e-33 146.0 113 59.3
A05p18000 Brassica napus HOM05D002505 ORTHO05D006559 5.6e-30 136.3 150 45.3
BraA05t20694Z Brassica rapa HOM05D002505 ORTHO05D006559 5.6e-30 136.3 150 45.3
Pp3c12_26140 Physcomitrium patens HOM05D002505 ORTHO05D006559 7.8e-24 115.9 137 43.8
BcaC08g44112 Brassica carinata HOM05D002505 ORTHO05D006559 4.3e-22 110.2 112 49.1
Thhalv10012156m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 4.8e-21 106.7 80 58.8
Mapoly0043s0004 Marchantia polymorpha HOM05D002505 ORTHO05D006559 6.9e-20 102.8 478 28.0
AagrBONN_evm.TU.Sc2ySwM_228.276 Anthoceros agrestis HOM05D002505 ORTHO05D006559 3.8e-18 97.1 125 37.6
QL04p094482 Quercus lobata HOM05D000280 ORTHO05D006559 3.8e-18 97.1 69 66.7
Dinv29488 Davidia involucrata HOM05D002505 ORTHO05D006559 8.4e-18 95.9 63 76.2
RcHm_v2.0_Chr5g0023281 Rosa chinensis HOM05D002505 ORTHO05D006559 9.3e-17 92.4 62 72.6
Ah.07g202770 Amaranthus hybridus HOM05D002505 ORTHO05D006559 3.5e-16 90.5 64 67.2
Haze_18499 Corylus avellana HOM05D002505 ORTHO05D006559 3.9e-15 87.0 64 65.6
COL.COLO4_21461 Corchorus olitorius HOM05D002505 ORTHO05D006559 5.1e-15 86.7 342 33.9
Ah.13g066490 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.1e-14 85.5 65 64.6
Actinidia26205 Actinidia chinensis HOM05D002505 ORTHO05D006559 4.3e-14 83.6 246 32.9
Actinidia26206 Actinidia chinensis HOM05D002505 ORTHO05D006559 7.3e-14 82.8 56 73.2
SEGI_13390 Sequoiadendron giganteum HOM05D002505 ORTHO05D006559 2.1e-08 64.7 56 53.6


User provided reference genes

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