Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0053G058 Amborella trichopoda HOM05D005024 ORTHO05D006396 3.3e-275 951.0 471 100.0
Nn8g38600 Nelumbo nucifera HOM05D005024 ORTHO05D006396 1.1e-142 510.8 462 55.6
PSO401G0002 Papaver somniferum HOM05D005024 ORTHO05D006396 1.7e-141 506.9 465 55.5
PSO789G0001 Papaver somniferum HOM05D005024 ORTHO05D006396 5.3e-140 501.9 467 55.2
RcHm_v2.0_Chr6g0304801 Rosa chinensis HOM05D005024 ORTHO05D006396 9.1e-140 501.1 475 55.6
CSS0015942 Camellia sinensis var. sinensis HOM05D005024 ORTHO05D006396 7.7e-139 498.0 463 55.3
PSO724G1181 Papaver somniferum HOM05D005024 ORTHO05D006396 1.3e-138 497.3 465 54.6
SEGI_27832 Sequoiadendron giganteum HOM05D005024 ORTHO05D006396 2.5e-137 493.0 472 54.0
GSVIVG01035495001 Vitis vinifera HOM05D005024 ORTHO05D006396 8.0e-136 488.0 468 54.1
Eucgr.C00744 Eucalyptus grandis HOM05D005024 ORTHO05D006396 1.0e-135 487.6 463 55.5
MD15G1047400 Malus domestica HOM05D005024 ORTHO05D006396 1.0e-135 487.6 465 54.2
FAN15G2531 Fragaria x ananassa HOM05D005024 ORTHO05D006396 4.0e-135 485.7 466 54.9
MD08G1046400 Malus domestica HOM05D005024 ORTHO05D006396 6.7e-135 485.0 464 53.7
TWI63G0562 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 1.2e-134 484.2 463 54.9
FAN27G2149 Fragaria x ananassa HOM05D005024 ORTHO05D006396 1.5e-134 483.8 464 55.2
FvH4_2g36960 Fragaria vesca HOM05D005024 ORTHO05D006396 2.0e-134 483.4 465 55.1
Atru.chr7.1825 Acer truncatum HOM05D005024 ORTHO05D006396 5.7e-134 481.9 462 54.1
Duzib168G0917 Durio zibethinus HOM05D005024 ORTHO05D006396 9.7e-134 481.1 462 54.3
COL.COLO4_21162 Corchorus olitorius HOM05D005024 ORTHO05D006396 3.7e-133 479.2 462 53.9
FAN20G2081 Fragaria x ananassa HOM05D005024 ORTHO05D006396 2.4e-132 476.5 481 53.4
CiPaw.15G090700 Carya illinoinensis HOM05D005024 ORTHO05D006396 3.1e-132 476.1 463 53.1
Gohir.D07G018500 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.2e-131 474.2 464 53.0
TWI34G1336 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 2.0e-131 473.4 463 53.3
Cc08_g06760 Coffea canephora HOM05D005024 ORTHO05D006396 3.5e-131 472.6 463 54.4
MBI19_g09934_MAGBIO Magnolia biondii HOM05D005024 ORTHO05D006396 5.9e-131 471.9 428 57.5
Duzib150G0504 Durio zibethinus HOM05D005024 ORTHO05D006396 1.0e-130 471.1 462 53.9
Gohir.A07G018700 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.7e-130 470.3 463 52.7
Gorai.001G019200 Gossypium raimondii HOM05D005024 ORTHO05D006396 1.7e-130 470.3 464 52.6
Sabra06G0168600 Salix brachista HOM05D005024 ORTHO05D006396 2.2e-130 469.9 469 53.9
Os09g0440200 Oryza sativa ssp. japonica HOM05D005024 ORTHO05D006396 2.9e-130 469.5 465 52.7
VMungo1309G0309 Vigna mungo HOM05D005024 ORTHO05D006396 5.0e-130 468.8 463 51.4
Zm00001eb314080 Zea mays HOM05D005024 ORTHO05D006396 1.9e-129 466.8 463 52.1
Manes.03G056600 Manihot esculenta HOM05D005024 ORTHO05D006396 2.5e-129 466.5 462 52.8
Glyma.06G058100 Glycine max HOM05D005024 ORTHO05D006396 3.2e-129 466.1 462 51.1
Gohir.A05G037800 Gossypium hirsutum HOM05D005024 ORTHO05D006396 3.2e-129 466.1 466 52.4
Manes.16G087100 Manihot esculenta HOM05D005024 ORTHO05D006396 2.1e-128 463.4 462 53.2
Potri.006G218800 Populus trichocarpa HOM05D005024 ORTHO05D006396 1.4e-127 460.7 463 54.0
CsaV3_6G031850 Cucumis sativus L. HOM05D005024 ORTHO05D006396 8.8e-127 458.0 463 53.3
MELO3C011496.2 Cucumis melo HOM05D005024 ORTHO05D006396 2.2e-125 453.4 459 53.4
Aqoxy4G00037 Aquilegia oxysepala HOM05D005024 ORTHO05D006396 2.8e-125 453.0 459 52.3
Ciclev10007934m.g Citrus clementina HOM05D005024 ORTHO05D006396 4.8e-125 452.2 462 51.3
Gorai.009G039800 Gossypium raimondii HOM05D005024 ORTHO05D006396 6.3e-125 451.8 453 51.9
Phvul.009G083900 Phaseolus vulgaris HOM05D005024 ORTHO05D006396 6.3e-125 451.8 464 50.0
ClCG08G009730 Citrullus lanatus HOM05D005024 ORTHO05D006396 1.8e-124 450.3 463 52.9
Glyma.04G057500 Glycine max HOM05D005024 ORTHO05D006396 9.1e-124 448.0 463 49.9
Lj1g0011589 Lotus japonicus HOM05D005024 ORTHO05D006396 4.5e-123 445.7 466 51.1
Nitab4.5_0000508g0040 Nicotiana tabacum HOM05D005024 ORTHO05D006396 5.9e-123 445.3 457 51.6
Sopen08g021170 Solanum pennellii HOM05D005024 ORTHO05D006396 1.0e-122 444.5 463 51.8
arahy.Tifrunner.gnm1.ann1.JR430F Arachis hypogaea HOM05D005024 ORTHO05D006396 3.8e-122 442.6 463 50.8
arahy.Tifrunner.gnm1.ann1.Q4799Z Arachis hypogaea HOM05D005024 ORTHO05D006396 2.5e-121 439.9 463 50.8
Psat5g034920 Pisum sativum HOM05D005024 ORTHO05D006396 1.2e-120 437.6 463 50.1
Nitab4.5_0004346g0050 Nicotiana tabacum HOM05D005024 ORTHO05D006396 1.6e-120 437.2 457 51.0
PGR142G1044 Punica granatum HOM05D005024 ORTHO05D006396 2.8e-120 436.4 474 49.4
Ca_15807_v3 Cicer arietinum L. HOM05D005024 ORTHO05D006396 4.7e-120 435.6 471 49.3
Lalb_Chr08g0244691 Lupinus albus HOM05D005024 ORTHO05D006396 1.4e-119 434.1 465 50.5
Sed0007384 Sechium edule HOM05D005024 ORTHO05D006396 7.5e-118 428.3 513 48.1
Medtr3g105400 Medicago truncatula HOM05D005024 ORTHO05D006396 1.3e-117 427.6 452 50.7
Dinv41847 Davidia involucrata HOM05D005024 ORTHO05D006396 2.2e-117 426.8 416 55.5
SalBow4G3344 Salvia bowleyana HOM05D005024 ORTHO05D006396 4.9e-117 425.6 475 48.8
Sc23g0006070 Simmondsia chinensis HOM05D005024 ORTHO05D006396 8.3e-117 424.9 472 48.7
HanXRQChr03g0067181 Helianthus annuus HOM05D005024 ORTHO05D006396 1.1e-116 424.5 466 49.6
Migut.A00327 Erythranthe guttata HOM05D005024 ORTHO05D006396 2.7e-115 419.9 462 49.4
MSTRG.11771 Avicennia marina HOM05D005024 ORTHO05D006396 3.5e-115 419.5 461 48.2
Oeu045334.2 Olea europaea HOM05D005024 ORTHO05D006396 1.9e-113 413.7 500 47.2
Lalb_Chr23g0268051 Lupinus albus HOM05D005024 ORTHO05D006396 4.3e-113 412.5 457 48.8
Cpa.g.sc82.16 Carica papaya HOM05D005024 ORTHO05D006396 5.6e-113 412.1 427 51.3
DCAR_001244 Daucus carota HOM05D005024 ORTHO05D006396 2.8e-112 409.8 460 48.0
Thecc.09G065700 Theobroma cacao HOM05D005024 ORTHO05D006396 2.8e-112 409.8 416 51.9
Gohir.D08G268300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 8.0e-112 408.3 462 49.1
Gorai.004G286000 Gossypium raimondii HOM05D005024 ORTHO05D006396 1.0e-111 407.9 462 48.9
Prupe.1G401800 Prunus persica HOM05D005024 ORTHO05D006396 3.1e-111 406.4 463 48.6
Lj7C207G3 Lonicera japonica HOM05D005024 ORTHO05D006396 5.8e-110 402.1 428 52.8
AT2G26270 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 7.5e-110 401.7 462 48.5
Gohir.D05G039300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 3.7e-109 399.4 453 47.9
CiPaw.05G157300 Carya illinoinensis HOM05D005024 ORTHO05D006396 4.1e-108 396.0 446 48.0
HPP92_013024 Vanilla planifolia HOM05D005024 ORTHO05D006396 1.7e-106 390.6 435 49.0
Gohir.A08G247100 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.9e-105 387.1 447 47.7
Aa31LG5G9530 Aethionema arabicum HOM05D005024 ORTHO05D006396 2.1e-104 383.6 472 45.8
CARHR115110 Cardamine hirsuta HOM05D005024 ORTHO05D006396 2.1e-104 383.6 458 45.0
ECA240G2599 Erigeron canadensis HOM05D005024 ORTHO05D006396 3.6e-104 382.9 446 46.6
Sp4g06550 Schrenkiella parvula HOM05D005024 ORTHO05D006396 3.6e-104 382.9 462 45.5
MSTRG.25847 Avicennia marina HOM05D005024 ORTHO05D006396 8.0e-104 381.7 465 45.4
BcaB06g28091 Brassica carinata HOM05D005024 ORTHO05D006396 1.5e-102 377.5 462 45.0
PGSC0003DMG400007379 Solanum tuberosum HOM05D005024 ORTHO05D006396 3.4e-102 376.3 359 54.3
Lsat_1_v5_gn_7_59161 Lactuca sativa HOM05D005024 ORTHO05D006396 5.8e-102 375.6 455 45.3
A04p20310 Brassica napus HOM05D005024 ORTHO05D006396 3.7e-101 372.9 467 45.2
BraA04t17610Z Brassica rapa HOM05D005024 ORTHO05D006396 3.7e-101 372.9 467 45.2
BcaC02g08288 Brassica carinata HOM05D005024 ORTHO05D006396 4.1e-100 369.4 467 45.2
ECA236G2474 Erigeron canadensis HOM05D005024 ORTHO05D006396 9.2e-100 368.2 457 45.3
Peaxi162Scf00922g00210 Petunia axillaris HOM05D005024 ORTHO05D006396 1.6e-99 367.5 462 46.1
THA.LOC104819895 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 3.5e-99 366.3 463 45.1
Solyc08g067240.4 Solanum lycopersicum HOM05D005024 ORTHO05D006396 1.0e-98 364.8 457 45.5
C04p56010 Brassica napus HOM05D005024 ORTHO05D006396 3.0e-98 363.2 467 45.0
BolC4t27134H Brassica oleracea HOM05D005024 ORTHO05D006396 3.0e-98 363.2 467 45.0
HanXRQChr05g0136401 Helianthus annuus HOM05D005024 ORTHO05D006396 7.3e-97 358.6 466 44.0
Pp3c6_19110 Physcomitrium patens HOM05D005024 ORTHO05D006396 3.4e-94 349.7 483 40.6
SMO169G0310 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 3.4e-94 349.7 469 40.9
TAR624G0706 Trochodendron aralioides HOM05D005024 ORTHO05D006396 1.3e-93 347.8 359 52.9
THA.LOC104810953 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 1.1e-92 344.7 464 43.8
AagrBONN_evm.TU.Sc2ySwM_228.2412 Anthoceros agrestis HOM05D005024 ORTHO05D006396 1.4e-92 344.4 464 40.5
Ah.07g205360 Amaranthus hybridus HOM05D005024 ORTHO05D006396 4.6e-91 339.3 425 44.5
EL10Ac2g02404 Beta vulgaris HOM05D005024 ORTHO05D006396 2.3e-90 337.0 510 39.8
Carub.0004s0614 Capsella rubella HOM05D005024 ORTHO05D006396 7.3e-89 332.0 426 44.1
BcaB08g35274 Brassica carinata HOM05D005024 ORTHO05D006396 1.2e-83 314.7 417 44.1
Thhalv10001999m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 1.6e-83 314.3 426 42.3
Pp3c3_23860 Physcomitrium patens HOM05D005024 ORTHO05D006396 3.0e-82 310.1 482 40.7
AT3G43930 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 2.8e-80 303.5 464 38.6
AL5G21960 Arabidopsis lyrata HOM05D005024 ORTHO05D006396 1.4e-79 301.2 490 36.9
Thhalv10011063m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 3.4e-78 296.6 463 37.8
CBR_g17947 Chara braunii HOM05D005024 ORTHO05D006396 1.1e-76 291.6 516 35.7
SHI28014 Sapria himalayana HOM05D005024 ORTHO05D006396 7.1e-76 288.9 401 42.9
Oeu030211.1 Olea europaea HOM05D005024 ORTHO05D006396 2.1e-75 287.3 402 41.3
Rhsim06G0092200 Rhododendron simsii HOM05D005024 ORTHO05D006396 1.3e-74 284.6 318 48.1
SGA_v2.0_scaffold147G36313 Striga asiatica HOM05D005024 ORTHO05D006396 3.9e-74 283.1 355 46.2
Lsat_1_v5_gn_8_70380 Lactuca sativa HOM05D005024 ORTHO05D006396 3.3e-73 280.0 477 37.7
CiPaw.05G156800 Carya illinoinensis HOM05D005024 ORTHO05D006396 1.3e-69 268.1 277 53.1
Haze_18325 Corylus avellana HOM05D005024 ORTHO05D006396 4.9e-69 266.2 460 36.7
TPR.G31221 Trifolium pratense HOM05D005024 ORTHO05D006396 8.4e-69 265.4 235 57.9
CDE07G0506 Ceratophyllum demersum HOM05D005024 ORTHO05D006396 3.5e-67 260.0 381 42.0
AUR62020277 Chenopodium quinoa HOM05D005024 ORTHO05D006396 2.2e-61 240.7 308 41.9
AUR62037728 Chenopodium quinoa HOM05D005024 ORTHO05D006396 4.2e-60 236.5 291 42.3
Rhsim06G0128300 Rhododendron simsii HOM05D005024 ORTHO05D006396 1.8e-55 221.1 389 36.5
vmacro21130 Vaccinium macrocarpon HOM05D005024 ORTHO05D006396 3.2e-44 183.7 190 48.9
unitig_46.g18534 Utricularia gibba HOM05D005024 ORTHO05D006396 1.1e-41 175.3 150 62.7
unitig_46.g18535 Utricularia gibba HOM05D005024 ORTHO05D006396 4.5e-38 163.3 259 37.5
Carub.0005s0971 Capsella rubella HOM05D005024 ORTHO05D006396 7.7e-38 162.5 202 44.6
CAN.G348.11 Capsicum annuum HOM05D005024 ORTHO05D006396 4.7e-35 153.3 164 47.6
SMO336G0001 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 1.5e-33 148.3 238 35.3
TPR.G26130 Trifolium pratense HOM05D005024 ORTHO05D006396 1.1e-25 122.1 97 61.9
CBR_g899 Chara braunii HOM05D005024 ORTHO05D006396 2.6e-22 110.9 276 30.1
Cpa.g.sc82.17 Carica papaya HOM05D005024 ORTHO05D006396 1.5e-17 95.1 71 66.2
AUR62020278 Chenopodium quinoa HOM05D005024 ORTHO05D006396 2.6e-17 94.4 66 66.7
AUR62037727 Chenopodium quinoa HOM05D005024 ORTHO05D006396 2.8e-16 90.9 68 61.8
SHI08483 Sapria himalayana HOM05D005024 ORTHO05D006396 4.1e-15 87.0 199 30.2
TPR.G26129 Trifolium pratense HOM05D005024 ORTHO05D006396 5.7e-09 66.6 75 44.0
Cre10.g440500 Chlamydomonas reinhardtii HOM05D005024 ORTHO05D145006 9.8e-09 65.9 425 21.6
TPR.G3563 Trifolium pratense HOM05D005024 ORTHO05D006396 2.4e-07 61.2 34 76.5
PSO198G0133 Papaver somniferum HOM05D005024 ORTHO05D006396 5.9e-06 56.6 29 79.3


User provided reference genes

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