Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0053G052 Amborella trichopoda HOM05D003529 ORTHO05D004106 5.7e-74 280.8 140 100.0
MBI10_g08537_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 9.6e-13 77.4 134 37.3
CsaV3_4G001080 Cucumis sativus L. HOM05D003529 ORTHO05D004106 9.0e-11 70.9 137 31.4
Sopen09g030370 Solanum pennellii HOM05D003529 ORTHO05D004106 9.0e-11 70.9 129 36.4
TAR622G1405 Trochodendron aralioides HOM05D004062 ORTHO05D004417 1.2e-10 70.5 127 31.5
Nn4g23971 Nelumbo nucifera HOM05D004062 ORTHO05D004417 1.5e-10 70.1 138 32.6
Solyc09g075570.1 Solanum lycopersicum HOM05D003529 ORTHO05D004106 2.0e-10 69.7 129 35.7
TAR622G0216 Trochodendron aralioides HOM05D004062 ORTHO05D004417 2.6e-10 69.3 135 31.9
ClCG10G011190 Citrullus lanatus HOM05D003529 ORTHO05D004106 1.3e-09 67.0 137 29.2
PGSC0003DMG400031841 Solanum tuberosum HOM05D003529 ORTHO05D004106 1.3e-09 67.0 129 35.7
MBI16_g14298_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.7e-09 66.6 119 37.0
Medtr1g087775 Medicago truncatula HOM05D003529 ORTHO05D004106 2.2e-09 66.2 95 42.1
Aqoxy3G03996 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 5.0e-09 65.1 125 33.6
MBI16_g14297_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 5.0e-09 65.1 118 36.4
Peaxi162Scf00001g00294 Petunia axillaris HOM05D003529 ORTHO05D004106 6.5e-09 64.7 130 35.4
Sed0005967 Sechium edule HOM05D003529 ORTHO05D004106 6.5e-09 64.7 100 35.0
CAN.G668.31 Capsicum annuum HOM05D003529 ORTHO05D004106 1.4e-08 63.5 137 34.3
Psat6g162960 Pisum sativum HOM05D003529 ORTHO05D004106 1.4e-08 63.5 102 37.3
MBI16_g14296_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.9e-08 63.2 116 37.1
Oeu011480.1 Olea europaea HOM05D003529 ORTHO05D004106 1.9e-08 63.2 129 29.5
RcHm_v2.0_Chr7g0242001 Rosa chinensis HOM05D003529 ORTHO05D004106 1.9e-08 63.2 128 31.2
MELO3C017929.2 Cucumis melo HOM05D003529 ORTHO05D004106 2.5e-08 62.8 137 29.9
Dinv34790 Davidia involucrata HOM05D002710 ORTHO05D002905 2.5e-08 62.8 128 28.9
CANSAT25G0832 Cannabis sativa HOM05D003529 ORTHO05D004106 3.2e-08 62.4 131 34.4
Dinv10056 Davidia involucrata HOM05D003529 ORTHO05D004106 4.2e-08 62.0 129 32.6
Zm00001eb285880 Zea mays HOM05D003529 ORTHO05D004106 4.2e-08 62.0 136 33.8
TAR633G2691 Trochodendron aralioides HOM05D003529 ORTHO05D004106 5.5e-08 61.6 102 37.3
Nn3g17968 Nelumbo nucifera HOM05D004062 ORTHO05D004417 7.2e-08 61.2 131 32.1
ATR0706G120 Amborella trichopoda HOM05D003529 ORTHO05D004106 9.3e-08 60.8 121 32.2
CSS0011800 Camellia sinensis var. sinensis HOM05D003529 ORTHO05D004106 1.2e-07 60.5 134 33.6
SEGI_14476 Sequoiadendron giganteum HOM05D003529 ORTHO05D004106 1.2e-07 60.5 124 33.1
Oeu006461.1 Olea europaea HOM05D003529 ORTHO05D004106 1.6e-07 60.1 129 29.5
SGA_v2.0_scaffold376G50256 Striga asiatica HOM05D003529 ORTHO05D004106 1.6e-07 60.1 134 32.8
PGSC0003DMG400007290 Solanum tuberosum HOM05D003529 ORTHO05D004106 2.7e-07 59.3 123 35.8
Thecc.04G128000 Theobroma cacao HOM05D004062 ORTHO05D004417 2.7e-07 59.3 128 28.9
Atru.chr5.1067 Acer truncatum HOM05D003529 ORTHO05D004106 4.6e-07 58.5 141 29.8
Lj2P1201T47 Lonicera japonica HOM05D003529 ORTHO05D004106 4.6e-07 58.5 125 36.0
unitig_85.g27172 Utricularia gibba HOM05D002424 ORTHO05D002640 4.6e-07 58.5 117 38.5
Lj1g0023980 Lotus japonicus HOM05D003529 ORTHO05D004106 6.1e-07 58.2 141 30.5
SGA_v2.0_scaffold334G49044 Striga asiatica HOM05D003529 ORTHO05D004106 6.1e-07 58.2 108 36.1
FAN08G2441 Fragaria x ananassa HOM05D003529 ORTHO05D004106 7.9e-07 57.8 101 38.6
Gohir.A12G127800 Gossypium hirsutum HOM05D003529 ORTHO05D004106 7.9e-07 57.8 127 32.3
Gohir.D12G131300 Gossypium hirsutum HOM05D003529 ORTHO05D004106 7.9e-07 57.8 127 32.3
Gorai.008G142600 Gossypium raimondii HOM05D003529 ORTHO05D004106 7.9e-07 57.8 127 32.3
Potri.017G119800 Populus trichocarpa HOM05D004062 ORTHO05D004417 7.9e-07 57.8 132 29.5
Cc01_g04570 Coffea canephora HOM05D003529 ORTHO05D004106 1.0e-06 57.4 141 27.7
BcaC07g40776 Brassica carinata HOM05D003529 ORTHO05D004106 1.8e-06 56.6 127 32.3
Lj5g0005836 Lotus japonicus HOM05D003529 ORTHO05D004106 1.8e-06 56.6 152 30.9
Nn3g21602 Nelumbo nucifera HOM05D003529 ORTHO05D004106 1.8e-06 56.6 143 30.8
Prupe.8G268600 Prunus persica HOM05D003529 ORTHO05D004106 1.8e-06 56.6 104 36.5
BcaC08g45209 Brassica carinata HOM05D003529 ORTHO05D004106 2.3e-06 56.2 120 30.8
TAR629G2241 Trochodendron aralioides HOM05D004062 ORTHO05D004417 2.3e-06 56.2 128 29.7
C06p28320 Brassica napus HOM05D003529 ORTHO05D004106 3.0e-06 55.8 122 31.1
Migut.D00112 Erythranthe guttata HOM05D003529 ORTHO05D004106 3.0e-06 55.8 102 34.3
Sabra04G0064400 Salix brachista HOM05D004062 ORTHO05D004417 3.0e-06 55.8 133 28.6
Ciclev10022679m.g Citrus clementina HOM05D003529 ORTHO05D004106 3.9e-06 55.5 135 29.6
Thhalv10001673m.g Eutrema salsugineum HOM05D003529 ORTHO05D004106 3.9e-06 55.5 89 37.1
Cc01_g21210 Coffea canephora HOM05D003529 ORTHO05D004106 5.1e-06 55.1 135 26.7
PGR119G1167 Punica granatum HOM05D003529 ORTHO05D004106 5.1e-06 55.1 132 31.8
Eucgr.B02857 Eucalyptus grandis HOM05D004062 ORTHO05D004417 6.7e-06 54.7 138 29.0
MD03G1298600 Malus domestica HOM05D003529 ORTHO05D004106 6.7e-06 54.7 133 31.6
Os01g0308600 Oryza sativa ssp. japonica HOM05D003529 ORTHO05D004106 6.7e-06 54.7 135 31.9
TPR.G19765 Trifolium pratense HOM05D003529 ORTHO05D004106 6.7e-06 54.7 143 32.9
TAR636G2223 Trochodendron aralioides HOM05D003529 ORTHO05D004106 6.7e-06 54.7 130 33.1
A09p54520 Brassica napus HOM05D003529 ORTHO05D004106 8.7e-06 54.3 127 31.5
BolC4t21684H Brassica oleracea HOM05D003529 ORTHO05D004106 8.7e-06 54.3 89 36.0
BraA09t40864Z Brassica rapa HOM05D003529 ORTHO05D004106 8.7e-06 54.3 127 31.5
Duzib138G0221 Durio zibethinus HOM05D004062 ORTHO05D004417 8.7e-06 54.3 128 28.1


User provided reference genes

Program Settings