Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0053G008 Amborella trichopoda HOM05D003749 ORTHO05D004421 3.4e-74 281.6 140 100.0
Sed0006006 Sechium edule HOM05D003749 ORTHO05D004421 5.6e-53 211.1 142 72.5
CiPaw.04G040000 Carya illinoinensis HOM05D003749 ORTHO05D004421 9.5e-53 210.3 142 73.9
CsaV3_5G039100 Cucumis sativus L. HOM05D003749 ORTHO05D004421 9.5e-53 210.3 142 71.8
CDE01G0232 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 1.2e-52 209.9 142 73.9
ClCG11G005320 Citrullus lanatus HOM05D003749 ORTHO05D004421 1.2e-52 209.9 142 71.1
CDE02G3838 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 2.8e-52 208.8 142 73.9
MELO3C022086.2 Cucumis melo HOM05D003749 ORTHO05D004421 2.8e-52 208.8 142 70.4
Hund15121 Selenicereus undatus HOM05D003749 ORTHO05D004421 4.7e-52 208.0 141 73.0
CiPaw.03G059000 Carya illinoinensis HOM05D003749 ORTHO05D004421 8.1e-52 207.2 142 71.8
THA.LOC104805552 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 1.1e-51 206.8 142 69.7
PGR042G1179 Punica granatum HOM05D003749 ORTHO05D004421 1.4e-51 206.5 142 73.2
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 5.2e-51 204.5 142 71.8
THA.LOC104823870 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 6.8e-51 204.1 142 69.0
Nitab4.5_0009272g0030 Nicotiana tabacum HOM05D003749 ORTHO05D004421 8.9e-51 203.8 142 71.8
Peaxi162Scf00479g00114 Petunia axillaris HOM05D003749 ORTHO05D004421 1.5e-50 203.0 142 70.4
Nn3g17694 Nelumbo nucifera HOM05D003749 ORTHO05D004421 2.0e-50 202.6 142 71.8
MBI10_g08551_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 2.6e-50 202.2 136 74.3
TAR629G3198 Trochodendron aralioides HOM05D003749 ORTHO05D004421 2.6e-50 202.2 142 71.8
Atru.chr8.949 Acer truncatum HOM05D003749 ORTHO05D004421 3.4e-50 201.8 142 71.1
Cfa007953 Carpinus fangiana HOM05D003749 ORTHO05D004421 5.8e-50 201.1 142 71.8
Atru.chr2.1608 Acer truncatum HOM05D003749 ORTHO05D004421 7.6e-50 200.7 140 70.7
MBI16_g33829_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 7.6e-50 200.7 140 70.7
EL10Ac5g11727 Beta vulgaris HOM05D003749 ORTHO05D004421 9.9e-50 200.3 141 71.6
Dinv33926 Davidia involucrata HOM05D003749 ORTHO05D004421 1.3e-49 199.9 142 69.0
Duzib138G1497 Durio zibethinus HOM05D003749 ORTHO05D004421 1.7e-49 199.5 142 73.9
MBI16_g46925_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 1.7e-49 199.5 134 73.9
Sopen02g034510 Solanum pennellii HOM05D003749 ORTHO05D004421 2.9e-49 198.7 140 67.1
Manes.01G107800 Manihot esculenta HOM05D003749 ORTHO05D004421 3.8e-49 198.4 142 69.0
PGSC0003DMG400010046 Solanum tuberosum HOM05D003749 ORTHO05D004421 3.8e-49 198.4 140 67.1
TAR374G0647 Trochodendron aralioides HOM05D003749 ORTHO05D004421 3.8e-49 198.4 142 71.1
GSVIVG01036450001 Vitis vinifera HOM05D003749 ORTHO05D004421 3.8e-49 198.4 142 70.4
Manes.02G066100 Manihot esculenta HOM05D003749 ORTHO05D004421 4.9e-49 198.0 142 69.7
Nn4g23700 Nelumbo nucifera HOM05D003749 ORTHO05D004421 6.4e-49 197.6 136 71.3
Peaxi162Scf01056g00243 Petunia axillaris HOM05D003749 ORTHO05D004421 6.4e-49 197.6 142 66.9
Sc10g0001340 Simmondsia chinensis HOM05D003749 ORTHO05D004421 6.4e-49 197.6 142 70.4
CSS0022784 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 8.4e-49 197.2 145 69.0
QL02p052938 Quercus lobata HOM05D003749 ORTHO05D004421 8.4e-49 197.2 141 70.2
SEGI_14095 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 8.4e-49 197.2 135 68.9
Solyc02g089820.4 Solanum lycopersicum HOM05D003749 ORTHO05D004421 8.4e-49 197.2 140 67.1
AT1G67250 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 1.1e-48 196.8 137 70.1
Gorai.004G054900 Gossypium raimondii HOM05D003749 ORTHO05D004421 1.1e-48 196.8 142 71.1
Hma1.2p1_0550F.1_g177200 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 1.1e-48 196.8 142 69.0
Hma1.2p1_0550F.1_g177205 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 1.1e-48 196.8 142 69.0
BcaB03g15341 Brassica carinata HOM05D003749 ORTHO05D004421 1.9e-48 196.1 137 67.9
CSS0014522 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 1.9e-48 196.1 145 68.3
AUR62042069 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.9e-48 196.1 136 70.6
AUR62044332 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.9e-48 196.1 136 70.6
Sp5g22180 Schrenkiella parvula HOM05D003749 ORTHO05D004421 1.9e-48 196.1 137 67.9
Carub.0002s1352 Capsella rubella HOM05D003749 ORTHO05D004421 2.4e-48 195.7 137 68.6
CAN.G497.5 Capsicum annuum HOM05D003749 ORTHO05D004421 2.4e-48 195.7 140 66.4
AUR62040335 Chenopodium quinoa HOM05D003749 ORTHO05D004421 2.4e-48 195.7 136 70.6
SEGI_36613 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 2.4e-48 195.7 134 67.2
CANSAT64G0170 Cannabis sativa HOM05D003749 ORTHO05D004421 3.2e-48 195.3 142 69.0
Cpa.g.sc179.30 Carica papaya HOM05D003749 ORTHO05D004421 3.2e-48 195.3 142 68.3
Actinidia18121 Actinidia chinensis HOM05D003749 ORTHO05D004421 4.1e-48 194.9 145 66.9
C02p22710 Brassica napus HOM05D003749 ORTHO05D004421 4.1e-48 194.9 137 68.6
arahy.Tifrunner.gnm1.ann1.G4J1DJ Arachis hypogaea HOM05D003749 ORTHO05D004421 5.4e-48 194.5 136 69.1
Duzib268G0352 Durio zibethinus HOM05D003749 ORTHO05D004421 5.4e-48 194.5 142 70.4
Thhalv10027984m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 5.4e-48 194.5 137 68.6
Thecc.04G138900 Theobroma cacao HOM05D003749 ORTHO05D004421 5.4e-48 194.5 142 71.1
CARHR059720 Cardamine hirsuta HOM05D003749 ORTHO05D004421 7.1e-48 194.1 137 67.2
Ca_24455_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 7.1e-48 194.1 136 69.1
arahy.Tifrunner.gnm1.ann1.M5A7E6 Arachis hypogaea HOM05D003749 ORTHO05D004421 9.2e-48 193.7 134 69.4
Gohir.A08G044800 Gossypium hirsutum HOM05D003749 ORTHO05D004421 9.2e-48 193.7 142 70.4
Gohir.D08G054500 Gossypium hirsutum HOM05D003749 ORTHO05D004421 1.2e-47 193.4 142 69.7
Aa31LG2G3620 Aethionema arabicum HOM05D003749 ORTHO05D004421 1.6e-47 193.0 137 66.4
BcaC03g14820 Brassica carinata HOM05D003749 ORTHO05D004421 2.1e-47 192.6 137 67.9
A02p14100 Brassica napus HOM05D003749 ORTHO05D004421 2.1e-47 192.6 137 67.9
A07p33850 Brassica napus HOM05D003749 ORTHO05D004421 2.1e-47 192.6 137 67.9
BolC2t08424H Brassica oleracea HOM05D003749 ORTHO05D004421 2.1e-47 192.6 137 67.9
BolC6t39133H Brassica oleracea HOM05D003749 ORTHO05D004421 2.1e-47 192.6 137 67.9
BraA07t31011Z Brassica rapa HOM05D003749 ORTHO05D004421 2.1e-47 192.6 137 67.9
LjContig00222g0005460 Lotus japonicus HOM05D003749 ORTHO05D004421 2.1e-47 192.6 139 67.6
AT5G38650 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 2.7e-47 192.2 137 68.6
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 2.7e-47 192.2 137 68.6
BcaB03g15214 Brassica carinata HOM05D003749 ORTHO05D004421 2.7e-47 192.2 137 67.2
A07p32660 Brassica napus HOM05D003749 ORTHO05D004421 2.7e-47 192.2 137 67.2
C06p38830 Brassica napus HOM05D003749 ORTHO05D004421 2.7e-47 192.2 137 67.2
BolC6t38976H Brassica oleracea HOM05D003749 ORTHO05D004421 2.7e-47 192.2 137 67.2
BraA07t30890Z Brassica rapa HOM05D003749 ORTHO05D004421 2.7e-47 192.2 137 67.2
CARHR214090 Cardamine hirsuta HOM05D003749 ORTHO05D004421 2.7e-47 192.2 137 68.6
BcaB05g24251 Brassica carinata HOM05D003749 ORTHO05D004421 4.6e-47 191.4 137 67.2
BcaC08g46151 Brassica carinata HOM05D003749 ORTHO05D004421 4.6e-47 191.4 137 67.9
C06p43020 Brassica napus HOM05D003749 ORTHO05D004421 4.6e-47 191.4 137 67.9
BraA02t06473Z Brassica rapa HOM05D003749 ORTHO05D004421 4.6e-47 191.4 137 67.9
MD17G1073500 Malus domestica HOM05D003749 ORTHO05D004421 1.0e-46 190.3 142 66.9
Lalb_Chr09g0320331 Lupinus albus HOM05D003749 ORTHO05D004421 1.3e-46 189.9 136 66.9
MD09G1083200 Malus domestica HOM05D003749 ORTHO05D004421 1.3e-46 189.9 142 66.9
Prupe.3G240300 Prunus persica HOM05D003749 ORTHO05D004421 2.3e-46 189.1 142 66.9
Migut.K00859 Erythranthe guttata HOM05D003749 ORTHO05D004421 3.0e-46 188.7 140 64.3
Ah.02g115680 Amaranthus hybridus HOM05D003749 ORTHO05D004421 3.9e-46 188.3 134 69.4
Lalb_Chr16g0376641 Lupinus albus HOM05D003749 ORTHO05D004421 3.9e-46 188.3 141 66.7
Potri.017G111900 Populus trichocarpa HOM05D003749 ORTHO05D004421 1.1e-45 186.8 141 63.1
Carub.0007s3721 Capsella rubella HOM05D003749 ORTHO05D004421 1.5e-45 186.4 137 67.2
Thhalv10019303m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 1.5e-45 186.4 137 65.7
TWI38G0650 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 1.5e-45 186.4 142 66.9
HPP92_000270 Vanilla planifolia HOM05D003749 ORTHO05D004421 1.5e-45 186.4 140 65.0
COL.COLO4_16198 Corchorus olitorius HOM05D003749 ORTHO05D004421 2.5e-45 185.7 142 68.3
Rhsim10G0064100 Rhododendron simsii HOM05D003749 ORTHO05D004421 2.5e-45 185.7 163 60.7
MSTRG.3390 Avicennia marina HOM05D003749 ORTHO05D004421 3.3e-45 185.3 126 69.8
Nitab4.5_0002108g0070 Nicotiana tabacum HOM05D003749 ORTHO05D004421 5.6e-45 184.5 170 58.8
TWI39G0894 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 5.6e-45 184.5 142 65.5
Potri.006G249600 Populus trichocarpa HOM05D003749 ORTHO05D004421 2.1e-44 182.6 141 61.7
Ciclev10013059m.g Citrus clementina HOM05D003749 ORTHO05D004421 3.6e-44 181.8 138 63.0
SalBow1G5732 Salvia bowleyana HOM05D003749 ORTHO05D004421 3.6e-44 181.8 128 65.6
Migut.H00529 Erythranthe guttata HOM05D003749 ORTHO05D004421 8.1e-44 180.6 126 68.3
PSO063G3423 Papaver somniferum HOM05D003749 ORTHO05D004421 8.1e-44 180.6 143 65.0
Lalb_Chr19g0139861 Lupinus albus HOM05D003749 ORTHO05D004421 1.1e-43 180.3 141 66.0
Medtr4g077240 Medicago truncatula HOM05D003749 ORTHO05D004421 2.4e-43 179.1 140 62.9
Glyma.11G093000 Glycine max HOM05D003749 ORTHO05D004421 3.1e-43 178.7 140 64.3
SalBow6G0369 Salvia bowleyana HOM05D003749 ORTHO05D004421 4.0e-43 178.3 128 64.8
AL2G25760 Arabidopsis lyrata HOM05D003749 ORTHO05D004421 6.9e-43 177.6 186 52.2
unitig_748.g8406 Utricularia gibba HOM05D003749 ORTHO05D004421 8.9e-43 177.2 135 66.7
Glyma.12G019300 Glycine max HOM05D003749 ORTHO05D004421 1.2e-42 176.8 140 63.6
unitig_32.g10762 Utricularia gibba HOM05D003749 ORTHO05D004421 1.5e-42 176.4 126 68.3
FAN14G1502 Fragaria x ananassa HOM05D003749 ORTHO05D004421 2.0e-42 176.0 140 60.0
HanXRQChr14g0448851 Helianthus annuus HOM05D003749 ORTHO05D004421 2.0e-42 176.0 142 63.4
PSO782G4209 Papaver somniferum HOM05D003749 ORTHO05D004421 2.6e-42 175.6 143 62.9
Phvul.011G021700 Phaseolus vulgaris HOM05D003749 ORTHO05D004421 3.4e-42 175.3 140 64.3
FAN02G1560 Fragaria x ananassa HOM05D003749 ORTHO05D004421 4.4e-42 174.9 140 60.0
VMungo1127G1849 Vigna mungo HOM05D003749 ORTHO05D004421 4.4e-42 174.9 137 63.5
Haze_14116 Corylus avellana HOM05D003749 ORTHO05D004421 5.8e-42 174.5 193 53.4
Haze_14122 Corylus avellana HOM05D003749 ORTHO05D004421 5.8e-42 174.5 193 53.4
FAN05G0572 Fragaria x ananassa HOM05D003749 ORTHO05D004421 7.6e-42 174.1 140 60.0
TPR.G29477 Trifolium pratense HOM05D003749 ORTHO05D004421 7.6e-42 174.1 141 62.4
Ca_04934_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 1.3e-41 173.3 136 63.2
HanXRQChr12g0385611 Helianthus annuus HOM05D003749 ORTHO05D004421 1.3e-41 173.3 143 63.6
ECA238G2303 Erigeron canadensis HOM05D003749 ORTHO05D004421 2.9e-41 172.2 137 62.8
SGA_v2.0_scaffold62G21545 Striga asiatica HOM05D003749 ORTHO05D004421 2.9e-41 172.2 141 60.3
Pp3c23_15440 Physcomitrium patens HOM05D003749 ORTHO05D004421 8.4e-41 170.6 140 57.9
RcHm_v2.0_Chr2g0163251 Rosa chinensis HOM05D003749 ORTHO05D004421 1.9e-40 169.5 140 57.9
FvH4_6g45420 Fragaria vesca HOM05D003749 ORTHO05D004421 2.4e-40 169.1 136 59.6
Lj3g0004703 Lotus japonicus HOM05D003749 ORTHO05D004421 2.4e-40 169.1 141 61.0
Cc07_g05070 Coffea canephora HOM05D003749 ORTHO05D004421 9.3e-40 167.2 125 64.0
Pp3c20_8310 Physcomitrium patens HOM05D003749 ORTHO05D004421 9.3e-40 167.2 140 55.7
Zm00001eb258090 Zea mays HOM05D003749 ORTHO05D004421 1.2e-39 166.8 139 61.2
Lsat_1_v5_gn_2_90800 Lactuca sativa HOM05D003749 ORTHO05D004421 2.7e-39 165.6 138 61.6
Nitab4.5_0004487g0040 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.0e-38 163.7 175 53.1
Aqoxy3G03894 Aquilegia oxysepala HOM05D003749 ORTHO05D004421 2.3e-38 162.5 138 63.8
Mapoly0073s0035 Marchantia polymorpha HOM05D003749 ORTHO05D004421 2.3e-38 162.5 141 58.9
Os02g0800100 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.5e-37 159.1 134 60.4
AagrBONN_evm.TU.Sc2ySwM_344.3948 Anthoceros agrestis HOM05D003749 ORTHO05D004421 5.6e-37 157.9 137 54.0
Psat7g171120 Pisum sativum HOM05D003749 ORTHO05D004421 9.6e-37 157.1 143 59.4
Atru.chr2.1922 Acer truncatum HOM05D003749 ORTHO05D004421 4.8e-36 154.8 117 68.4
TWI38G0800 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 2.4e-35 152.5 142 55.6
Os03g0583700 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 4.0e-35 151.8 136 58.1
Os09g0314900 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 5.3e-35 151.4 136 58.1
Sp7g03260 Schrenkiella parvula HOM05D003749 ORTHO05D004421 2.0e-34 149.4 137 57.7
Medtr5g008020 Medicago truncatula HOM05D003749 ORTHO05D004421 1.4e-32 143.3 139 54.0
SMO119G0338 Selaginella moellendorffii HOM05D003749 ORTHO05D004421 3.5e-31 138.7 129 54.3
CBR_g34012 Chara braunii HOM05D003749 ORTHO05D004421 6.0e-31 137.9 125 53.6
ATR0693G122 Amborella trichopoda HOM05D003749 ORTHO05D004421 3.0e-30 135.6 73 87.7
CSS0049372 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 3.0e-30 135.6 145 52.4
vmacro05576 Vaccinium macrocarpon HOM05D003749 ORTHO05D004421 1.9e-29 132.9 289 33.9
Dinv34854 Davidia involucrata HOM05D003749 ORTHO05D004421 4.3e-29 131.7 108 64.8
Cre16.g665000 Chlamydomonas reinhardtii HOM05D003749 ORTHO05D004421 6.4e-25 117.9 118 48.3
CAN.G512.5 Capsicum annuum HOM05D003749 ORTHO05D004421 2.5e-21 105.9 72 66.7
MCO04G514 Micromonas commoda HOM05D003749 ORTHO05D004421 2.5e-21 105.9 122 48.4
Os02g0800500 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.6e-20 103.2 102 53.9
Os02g0801200 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.6e-20 103.2 102 53.9
Os02g0801300 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.6e-20 103.2 102 53.9
DCAR_007518 Daucus carota HOM05D003749 ORTHO05D004421 5.8e-18 94.7 67 62.7
unitig_748.g8606 Utricularia gibba HOM05D000345 ORTHO05D000215 1.0e-17 94.0 87 56.3
Sabra11G0068300 Salix brachista HOM05D000487 ORTHO05D004421 3.2e-16 89.0 59 67.8
Sabra16G0120200 Salix brachista HOM05D000487 ORTHO05D004421 3.2e-16 89.0 59 67.8
Oeu027946.1 Olea europaea HOM05D003749 ORTHO05D004421 1.9e-13 79.7 77 55.8
SalBow1G0221 Salvia bowleyana HOM05D003749 ORTHO05D004421 7.4e-13 77.8 63 58.7
Oeu049326.1 Olea europaea HOM05D003749 ORTHO05D004421 2.8e-12 75.9 77 54.5
BcaC02g12028 Brassica carinata HOM05D003749 ORTHO05D004421 8.2e-12 74.3 104 44.2
MSTRG.15417 Avicennia marina HOM05D003749 ORTHO05D004421 3.4e-10 68.9 64 50.0
PRCOL_00003426 Prasinoderma coloniale HOM05D003749 ORTHO05D004421 7.6e-10 67.8 121 38.8
Zm00001eb353660 Zea mays HOM05D003749 ORTHO05D004421 7.6e-10 67.8 98 40.8
C04p08860 Brassica napus HOM05D003749 ORTHO05D004421 1.0e-09 67.4 107 42.1
Oeu049327.1 Olea europaea HOM05D003749 ORTHO05D004421 1.7e-09 66.6 36 77.8
BolC1t05893H Brassica oleracea HOM05D003749 ORTHO05D016434 6.1e-07 58.2 110 38.2
MD05G1212600 Malus domestica HOM05D003749 ORTHO05D004421 1.0e-06 57.4 68 48.5
Gorai.008G075700 Gossypium raimondii HOM05D000140 ORTHO05D008077 2.3e-06 56.2 34 64.7
MD01G1088800 Malus domestica HOM05D003749 ORTHO05D004421 3.0e-06 55.8 68 48.5
Gohir.D12G069201 Gossypium hirsutum HOM05D000140 ORTHO05D008077 5.1e-06 55.1 34 61.8


User provided reference genes

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