Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0051G062 Amborella trichopoda HOM05D006980 ORTHO05D008704 3.0e-130 469.5 488 100.0
TAR633G1277 Trochodendron aralioides HOM05D006980 ORTHO05D008704 2.2e-56 224.2 202 52.5
Aqoxy2G01180 Aquilegia oxysepala HOM05D006980 ORTHO05D008704 6.5e-56 222.6 177 56.5
PSO541G2622 Papaver somniferum HOM05D006980 ORTHO05D008704 1.1e-55 221.9 210 50.5
PSO675G7214 Papaver somniferum HOM05D006980 ORTHO05D008704 6.1e-54 216.1 188 53.2
Sc02g0000270 Simmondsia chinensis HOM05D006980 ORTHO05D008704 7.9e-54 215.7 182 54.9
Ah.02g130100 Amaranthus hybridus HOM05D006980 ORTHO05D008704 1.1e-52 211.8 209 52.2
Prupe.7G109800 Prunus persica HOM05D006980 ORTHO05D008704 5.7e-52 209.5 194 51.5
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 7.4e-52 209.1 198 49.5
CANSAT64G1568 Cannabis sativa HOM05D006980 ORTHO05D008704 9.7e-52 208.8 179 53.1
Actinidia05428 Actinidia chinensis HOM05D006980 ORTHO05D008704 1.1e-50 205.3 179 54.2
Dinv21206 Davidia involucrata HOM05D006980 ORTHO05D008704 3.1e-50 203.8 177 53.7
RcHm_v2.0_Chr3g0473791 Rosa chinensis HOM05D006980 ORTHO05D008704 3.1e-50 203.8 182 53.8
FAN05G0999 Fragaria x ananassa HOM05D006980 ORTHO05D008704 4.1e-50 203.4 182 53.8
CSS0041599 Camellia sinensis var. sinensis HOM05D006980 ORTHO05D008704 9.1e-50 202.2 206 48.5
Nn6g34894 Nelumbo nucifera HOM05D006980 ORTHO05D008704 9.1e-50 202.2 164 58.5
EL10Ac6g13708 Beta vulgaris HOM05D006980 ORTHO05D008704 1.2e-49 201.8 215 48.4
QL07p038724 Quercus lobata HOM05D006980 ORTHO05D008704 1.5e-49 201.4 165 52.1
Cfa016610 Carpinus fangiana HOM05D006980 ORTHO05D008704 2.2e-48 197.6 166 52.4
Manes.09G055100 Manihot esculenta HOM05D006980 ORTHO05D008704 2.9e-48 197.2 178 53.9
Potri.006G068700 Populus trichocarpa HOM05D006980 ORTHO05D008704 1.4e-47 194.9 180 51.1
CiPaw.09G014400 Carya illinoinensis HOM05D006980 ORTHO05D008704 1.9e-47 194.5 190 48.9
Lsat_1_v5_gn_5_164841 Lactuca sativa HOM05D006980 ORTHO05D008704 2.1e-46 191.0 185 50.3
Cc02_g28460 Coffea canephora HOM05D006980 ORTHO05D008704 2.7e-46 190.7 223 43.0
Nitab4.5_0003259g0020 Nicotiana tabacum HOM05D006980 ORTHO05D008704 3.6e-46 190.3 176 50.0
Nitab4.5_0000025g0100 Nicotiana tabacum HOM05D006980 ORTHO05D008704 4.6e-46 189.9 176 50.0
AUR62014076 Chenopodium quinoa HOM05D006980 ORTHO05D008704 6.1e-46 189.5 220 44.1
Lj1g0023344 Lotus japonicus HOM05D006980 ORTHO05D008704 6.1e-46 189.5 181 48.1
Peaxi162Scf00045g00156 Petunia axillaris HOM05D006980 ORTHO05D008704 1.0e-45 188.7 195 46.2
AUR62005415 Chenopodium quinoa HOM05D006980 ORTHO05D008704 1.8e-45 188.0 220 44.1
QL07p038975 Quercus lobata HOM05D006980 ORTHO05D008704 3.0e-45 187.2 162 49.4
PGR142G3286 Punica granatum HOM05D006980 ORTHO05D008704 6.7e-45 186.0 221 45.2
CsaV3_6G007180 Cucumis sativus L. HOM05D006980 ORTHO05D008704 8.8e-45 185.7 183 49.7
Lj2P137T25 Lonicera japonica HOM05D006980 ORTHO05D008704 8.8e-45 185.7 148 56.8
Medtr7g104640 Medicago truncatula HOM05D006980 ORTHO05D008704 1.5e-44 184.9 182 49.5
Thecc.05G089500 Theobroma cacao HOM05D006980 ORTHO05D008704 2.0e-44 184.5 199 46.2
Sed0006527 Sechium edule HOM05D006980 ORTHO05D008704 2.6e-44 184.1 181 49.7
TPR.G19555 Trifolium pratense HOM05D006980 ORTHO05D008704 4.4e-44 183.3 163 50.9
Eucgr.G00971 Eucalyptus grandis HOM05D006980 ORTHO05D008704 5.7e-44 183.0 225 43.6
Sopen08g002140 Solanum pennellii HOM05D006980 ORTHO05D008704 9.7e-44 182.2 176 48.9
HanXRQChr02g0032651 Helianthus annuus HOM05D006980 ORTHO05D008704 1.3e-43 181.8 183 49.2
ECA248G2176 Erigeron canadensis HOM05D006980 ORTHO05D008704 1.7e-43 181.4 174 51.7
Solyc08g006170.1 Solanum lycopersicum HOM05D006980 ORTHO05D008704 1.7e-43 181.4 176 48.3
COL.COLO4_29731 Corchorus olitorius HOM05D006980 ORTHO05D008704 3.7e-43 180.3 199 44.2
PGSC0003DMG401009543 Solanum tuberosum HOM05D006980 ORTHO05D008704 4.8e-43 179.9 176 47.7
TWI77G0642 Tripterygium wilfordii HOM05D006980 ORTHO05D008704 4.8e-43 179.9 200 46.5
CAN.G2030.1 Capsicum annuum HOM05D006980 ORTHO05D008704 6.3e-43 179.5 180 47.2
Cpa.g.sc166.4 Carica papaya HOM05D006980 ORTHO05D008704 1.4e-42 178.3 190 47.9
ClCG06G001250 Citrullus lanatus HOM05D006980 ORTHO05D008704 2.4e-42 177.6 141 54.6
MELO3C022409.2 Cucumis melo HOM05D006980 ORTHO05D008704 3.1e-42 177.2 183 47.5
Rhsim03G0075000 Rhododendron simsii HOM05D006980 ORTHO05D008704 5.3e-42 176.4 180 49.4
arahy.Tifrunner.gnm1.ann1.IK7M5W Arachis hypogaea HOM05D006980 ORTHO05D008704 2.6e-41 174.1 173 46.8
arahy.Tifrunner.gnm1.ann1.3P0NFT Arachis hypogaea HOM05D006980 ORTHO05D008704 3.4e-41 173.7 173 46.8
GSVIVG01029738001 Vitis vinifera HOM05D006980 ORTHO05D008704 1.0e-40 172.2 203 44.3
CAN.G137.42 Capsicum annuum HOM05D006980 ORTHO05D008704 2.9e-40 170.6 161 49.1
Ciclev10011570m.g Citrus clementina HOM05D006980 ORTHO05D008704 2.9e-40 170.6 191 46.1
Atru.chr8.1533 Acer truncatum HOM05D006980 ORTHO05D008704 5.0e-40 169.9 167 48.5
Aa31LG5G21360 Aethionema arabicum HOM05D006980 ORTHO05D008704 4.2e-39 166.8 180 46.7
MSTRG.19261 Avicennia marina HOM05D006980 ORTHO05D008704 1.2e-38 165.2 177 45.2
CARHR130480 Cardamine hirsuta HOM05D006980 ORTHO05D008704 1.6e-38 164.9 182 46.2
Oeu056884.1 Olea europaea HOM05D006980 ORTHO05D008704 3.6e-38 163.7 175 44.0
SHI12421 Sapria himalayana HOM05D006980 ORTHO05D008704 3.6e-38 163.7 183 43.2
THA.LOC104804920 Tarenaya hassleriana HOM05D006980 ORTHO05D008704 3.6e-38 163.7 184 46.2
SalBow3G1904 Salvia bowleyana HOM05D006980 ORTHO05D008704 4.7e-38 163.3 177 46.3
Gorai.009G402600 Gossypium raimondii HOM05D006980 ORTHO05D008704 7.9e-38 162.5 199 42.7
Lalb_Chr20g0111701 Lupinus albus HOM05D006980 ORTHO05D008704 1.0e-37 162.2 178 47.8
SGA_v2.0_scaffold13G06715 Striga asiatica HOM05D006980 ORTHO05D008704 1.8e-37 161.4 149 49.0
AL4G32340 Arabidopsis lyrata HOM05D006980 ORTHO05D008704 3.9e-37 160.2 185 45.9
Duzib106G0372 Durio zibethinus HOM05D006980 ORTHO05D008704 3.9e-37 160.2 199 41.2
BcaC02g11726 Brassica carinata HOM05D006980 ORTHO05D008704 6.7e-37 159.5 180 43.9
BcaC02g11728 Brassica carinata HOM05D006980 ORTHO05D008704 6.7e-37 159.5 180 43.9
BcaB02g09370 Brassica carinata HOM05D006980 ORTHO05D008704 8.8e-37 159.1 183 44.3
Sp4g18460 Schrenkiella parvula HOM05D006980 ORTHO05D008704 4.4e-36 156.8 181 45.3
GSVIVG01015930001 Vitis vinifera HOM05D006980 ORTHO05D008704 1.7e-35 154.8 203 41.9
AT2G36240 Arabidopsis thaliana HOM05D006980 ORTHO05D008704 2.8e-35 154.1 181 43.6
SEGI_13947 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 6.3e-35 152.9 197 43.1
SEGI_40503 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 6.3e-35 152.9 197 43.1
BcaC02g11731 Brassica carinata HOM05D006980 ORTHO05D008704 1.8e-34 151.4 140 48.6
Cc00_g27900 Coffea canephora HOM05D006980 ORTHO05D008704 4.1e-34 150.2 172 41.9
Eucgr.G00972 Eucalyptus grandis HOM05D006980 ORTHO05D008704 9.1e-34 149.1 188 43.1
C04p11900 Brassica napus HOM05D006980 ORTHO05D008704 2.0e-33 147.9 151 45.7
Migut.J01034 Erythranthe guttata HOM05D006980 ORTHO05D008704 3.5e-33 147.1 194 38.7
BcaC02g11732 Brassica carinata HOM05D006980 ORTHO05D008704 1.3e-32 145.2 183 42.1
A05p09600 Brassica napus HOM05D006980 ORTHO05D008704 1.3e-32 145.2 185 43.2
BolC4t22838H Brassica oleracea HOM05D006980 ORTHO05D008704 1.3e-32 145.2 183 42.1
BcaB02g09372 Brassica carinata HOM05D006980 ORTHO05D008704 2.2e-32 144.4 146 45.9
HPP92_011900 Vanilla planifolia HOM05D006980 ORTHO05D008704 2.9e-32 144.1 169 41.4
BraA05t19913Z Brassica rapa HOM05D006980 ORTHO05D008704 8.5e-32 142.5 183 42.6
Phvul.001G190300 Phaseolus vulgaris HOM05D006980 ORTHO05D008704 8.5e-32 142.5 135 46.7
VMungo1383G3509 Vigna mungo HOM05D006980 ORTHO05D008704 4.7e-30 136.7 150 42.7
Glyma.03G196000 Glycine max HOM05D006980 ORTHO05D008704 1.0e-29 135.6 136 46.3
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 3.0e-29 134.0 113 53.1
Sabra06G0051200 Salix brachista HOM05D006980 ORTHO05D008704 4.0e-29 133.7 107 54.2
FAN02G3599 Fragaria x ananassa HOM05D006980 ORTHO05D008704 8.8e-29 132.5 107 53.3
Haze_19614 Corylus avellana HOM05D006980 ORTHO05D008704 5.7e-28 129.8 107 50.5
Ca_09007_v3 Cicer arietinum L. HOM05D006980 ORTHO05D008704 4.5e-25 120.2 107 52.3
arahy.Tifrunner.gnm1.ann1.FQN2WV Arachis hypogaea HOM05D006980 ORTHO05D008704 1.9e-23 114.8 106 50.0
Thhalv10016603m.g Eutrema salsugineum HOM05D006980 ORTHO05D008704 3.6e-22 110.5 186 37.6
Psat3g033240 Pisum sativum HOM05D006980 ORTHO05D008704 1.0e-21 109.0 107 48.6
DCAR_013476 Daucus carota HOM05D006980 ORTHO05D008704 3.4e-20 104.0 87 48.3
Eucgr.G00976 Eucalyptus grandis HOM05D006980 ORTHO05D008704 6.5e-16 89.7 202 33.7
Zm00001eb365120 Zea mays HOM05D006980 ORTHO05D008704 2.6e-12 77.8 189 31.2
Os01g0908800 Oryza sativa ssp. japonica HOM05D006980 ORTHO05D008704 2.4e-10 71.2 184 30.4
FAN05G0477 Fragaria x ananassa HOM05D006980 ORTHO05D008704 1.1e-07 62.4 37 73.0
FvH4_6g18780 Fragaria vesca HOM05D006980 ORTHO05D008704 3.3e-07 60.8 37 70.3
FAN14G4048 Fragaria x ananassa HOM05D006980 ORTHO05D008704 3.3e-07 60.8 37 70.3
ATR0559G329 Amborella trichopoda HOM05D006895 ORTHO05D008605 5.6e-07 60.1 158 31.0
Zm00001eb423490 Zea mays HOM05D006980 ORTHO05D008704 2.1e-06 58.2 43 58.1
Zm00001eb434620 Zea mays HOM05D006980 ORTHO05D008704 2.1e-06 58.2 43 58.1
ATR0796G327 Amborella trichopoda HOM05D007830 ORTHO05D009947 3.6e-06 57.4 125 27.2
arahy.Tifrunner.gnm1.ann1.M3LQ04 Arachis hypogaea HOM05D002453 ORTHO05D002107 3.6e-06 57.4 161 26.1
CANSAT01G2277 Cannabis sativa HOM05D007486 ORTHO05D003673 3.6e-06 57.4 223 26.5
ClCG04G008380 Citrullus lanatus HOM05D006895 ORTHO05D008605 3.6e-06 57.4 197 28.9
Carub.0004s1800 Capsella rubella HOM05D006980 ORTHO05D008704 4.7e-06 57.0 53 50.9
CDE04G3188 Ceratophyllum demersum HOM05D006895 ORTHO05D008605 4.7e-06 57.0 171 26.9
arahy.Tifrunner.gnm1.ann1.SFY2YX Arachis hypogaea HOM05D002453 ORTHO05D002107 8.0e-06 56.2 124 28.2


User provided reference genes

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