Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0049G078 Amborella trichopoda HOM05D006869 ORTHO05D008641 5.4e-41 170.6 91 100.0
Potri.001G145500 Populus trichocarpa HOM05D006869 ORTHO05D008641 2.3e-23 112.1 86 70.9
Migut.D00490 Erythranthe guttata HOM05D006869 ORTHO05D008641 1.1e-22 109.8 87 67.8
TAR375G0341 Trochodendron aralioides HOM05D006869 ORTHO05D008641 1.9e-22 109.0 79 69.6
CSS0028384 Camellia sinensis var. sinensis HOM05D006869 ORTHO05D008641 7.4e-22 107.1 77 72.7
CSS0030709 Camellia sinensis var. sinensis HOM05D006869 ORTHO05D008641 7.4e-22 107.1 77 72.7
MSTRG.17527 Avicennia marina HOM05D006869 ORTHO05D008641 1.6e-21 105.9 87 65.5
Atru.chr6.1763 Acer truncatum HOM05D006869 ORTHO05D008641 2.8e-21 105.1 91 64.8
Duzib205G1446 Durio zibethinus HOM05D006869 ORTHO05D008641 2.8e-21 105.1 96 62.5
Thecc.03G232900 Theobroma cacao HOM05D006869 ORTHO05D008641 2.8e-21 105.1 93 64.5
TWI15G0987 Tripterygium wilfordii HOM05D006869 ORTHO05D008641 6.3e-21 104.0 78 69.2
Sc22g0001440 Simmondsia chinensis HOM05D006869 ORTHO05D008641 8.2e-21 103.6 80 68.8
COL.COLO4_17099 Corchorus olitorius HOM05D006869 ORTHO05D008641 1.4e-20 102.8 94 62.8
PSO675G8621 Papaver somniferum HOM05D006869 ORTHO05D008641 1.8e-20 102.4 77 67.5
MD06G1029000 Malus domestica HOM05D006869 ORTHO05D008641 2.4e-20 102.1 87 63.2
PSO832G0919 Papaver somniferum HOM05D006869 ORTHO05D008641 3.1e-20 101.7 77 67.5
Cpa.g.sc6.427 Carica papaya HOM05D006869 ORTHO05D008641 4.1e-20 101.3 76 69.7
Gohir.A09G198300 Gossypium hirsutum HOM05D006869 ORTHO05D008641 4.1e-20 101.3 81 66.7
CiPaw.11G089700 Carya illinoinensis HOM05D006869 ORTHO05D008641 6.9e-20 100.5 86 64.0
Hund14421 Selenicereus undatus HOM05D006869 ORTHO05D008641 6.9e-20 100.5 86 64.0
Ciclev10033051m.g Citrus clementina HOM05D006869 ORTHO05D008641 9.0e-20 100.1 86 61.6
Gohir.D09G192900 Gossypium hirsutum HOM05D006869 ORTHO05D008641 9.0e-20 100.1 81 66.7
Prupe.5G042800 Prunus persica HOM05D006869 ORTHO05D008641 9.0e-20 100.1 87 59.8
Manes.15G174500 Manihot esculenta HOM05D006869 ORTHO05D008641 1.2e-19 99.8 77 67.5
Nn1g00590 Nelumbo nucifera HOM05D006869 ORTHO05D008641 1.2e-19 99.8 85 64.7
PSO732G0001 Papaver somniferum HOM05D006869 ORTHO05D008641 1.2e-19 99.8 77 63.6
CiPaw.12G061200 Carya illinoinensis HOM05D006869 ORTHO05D008641 1.5e-19 99.4 87 60.9
DCAR_024975 Daucus carota HOM05D006869 ORTHO05D008641 2.6e-19 98.6 87 60.9
PGR042G2539 Punica granatum HOM05D006869 ORTHO05D008641 2.6e-19 98.6 85 62.4
Lj3g0015338 Lotus japonicus HOM05D006869 ORTHO05D008641 3.4e-19 98.2 75 69.3
RcHm_v2.0_Chr7g0208861 Rosa chinensis HOM05D006869 ORTHO05D008641 3.4e-19 98.2 89 61.8
GSVIVG01013242001 Vitis vinifera HOM05D006869 ORTHO05D008641 3.4e-19 98.2 69 71.0
PGSC0003DMG400026597 Solanum tuberosum HOM05D006869 ORTHO05D008641 5.9e-19 97.4 81 61.7
CANSAT21G0218 Cannabis sativa HOM05D006869 ORTHO05D008641 7.6e-19 97.1 89 61.8
HanXRQChr08g0227941 Helianthus annuus HOM05D006869 ORTHO05D008641 7.6e-19 97.1 84 64.3
Sopen06g021250 Solanum pennellii HOM05D006869 ORTHO05D008641 7.6e-19 97.1 81 61.7
FvH4_5g21430 Fragaria vesca HOM05D006869 ORTHO05D008641 1.0e-18 96.7 91 60.4
Aqoxy3G02480 Aquilegia oxysepala HOM05D006869 ORTHO05D008641 1.3e-18 96.3 76 64.5
Eucgr.E00305 Eucalyptus grandis HOM05D006869 ORTHO05D008641 1.3e-18 96.3 80 65.0
Actinidia09229 Actinidia chinensis HOM05D002067 ORTHO05D002244 1.7e-18 95.9 84 63.1
Hma1.2p1_0414F.1_g147870 Hydrangea macrophylla HOM05D006869 ORTHO05D008641 1.7e-18 95.9 77 67.5
Medtr2g071640 Medicago truncatula HOM05D006869 ORTHO05D008641 2.2e-18 95.5 76 64.5
Phvul.005G061500 Phaseolus vulgaris HOM05D006869 ORTHO05D008641 2.2e-18 95.5 81 64.2
arahy.Tifrunner.gnm1.ann1.U4TMK5 Arachis hypogaea HOM05D006869 ORTHO05D008641 2.9e-18 95.1 85 60.0
arahy.Tifrunner.gnm1.ann1.4F5UFQ Arachis hypogaea HOM05D006869 ORTHO05D008641 3.8e-18 94.7 85 60.0
arahy.Tifrunner.gnm1.ann1.TLF144 Arachis hypogaea HOM05D006869 ORTHO05D008641 3.8e-18 94.7 85 60.0
MELO3C003378.2 Cucumis melo HOM05D006869 ORTHO05D008641 3.8e-18 94.7 81 60.5
SGA_v2.0_scaffold94G28479 Striga asiatica HOM05D006869 ORTHO05D008641 5.0e-18 94.4 91 56.0
Glyma.13G259900 Glycine max HOM05D006869 ORTHO05D008641 6.5e-18 94.0 74 66.2
CsaV3_1G016990 Cucumis sativus L. HOM05D006869 ORTHO05D008641 8.5e-18 93.6 81 59.3
CsaV3_3G049460 Cucumis sativus L. HOM05D006869 ORTHO05D008641 8.5e-18 93.6 81 59.3
Ca_03396_v3 Cicer arietinum L. HOM05D006869 ORTHO05D008641 1.1e-17 93.2 85 61.2
Glyma.15G248100 Glycine max HOM05D006869 ORTHO05D008641 1.4e-17 92.8 82 64.6
TPR.G26622 Trifolium pratense HOM05D006869 ORTHO05D008641 1.4e-17 92.8 81 61.7
VMungo1080G1596 Vigna mungo HOM05D006869 ORTHO05D008641 4.2e-17 91.3 87 58.6
FAN08G2623 Fragaria x ananassa HOM05D006869 ORTHO05D008641 5.5e-17 90.9 96 57.3
Sabra01G0114100 Salix brachista HOM05D006869 ORTHO05D008641 5.5e-17 90.9 117 51.3
FAN04G2266 Fragaria x ananassa HOM05D006869 ORTHO05D008641 7.2e-17 90.5 97 56.7
FAN13G1368 Fragaria x ananassa HOM05D006869 ORTHO05D008641 7.2e-17 90.5 96 57.3
Actinidia14827 Actinidia chinensis HOM05D006869 ORTHO05D008641 9.3e-17 90.1 84 60.7
FAN18G0870 Fragaria x ananassa HOM05D006869 ORTHO05D008641 9.3e-17 90.1 97 56.7
HPP92_026375 Vanilla planifolia HOM05D006869 ORTHO05D008641 9.3e-17 90.1 82 58.5
ECA233G4479 Erigeron canadensis HOM05D006869 ORTHO05D008641 1.6e-16 89.4 87 58.6
Lalb_Chr25g0285441 Lupinus albus HOM05D006869 ORTHO05D008641 2.7e-16 88.6 69 68.1
unitig_746.g26748 Utricularia gibba HOM05D006869 ORTHO05D008641 2.7e-16 88.6 87 57.5
Aa31LG2G13630 Aethionema arabicum HOM05D006869 ORTHO05D008641 7.9e-16 87.0 85 56.5
THA.LOC104798477 Tarenaya hassleriana HOM05D006869 ORTHO05D008641 1.4e-15 86.3 80 58.8
THA.LOC104798593 Tarenaya hassleriana HOM05D006869 ORTHO05D008641 1.4e-15 86.3 84 58.3
THA.LOC104822843 Tarenaya hassleriana HOM05D006869 ORTHO05D008641 1.4e-15 86.3 84 58.3
Os02g0279600 Oryza sativa ssp. japonica HOM05D006869 ORTHO05D008641 1.8e-15 85.9 75 61.3
DCAR_005606 Daucus carota HOM05D006869 ORTHO05D008641 3.9e-15 84.7 99 51.5
AL1G46570 Arabidopsis lyrata HOM05D006869 ORTHO05D008641 1.1e-14 83.2 84 57.1
SEGI_28722 Sequoiadendron giganteum HOM05D006869 ORTHO05D008641 1.5e-14 82.8 80 63.8
Sed0006536 Sechium edule HOM05D006869 ORTHO05D008641 1.9e-14 82.4 87 51.7
Sp1g28510 Schrenkiella parvula HOM05D006869 ORTHO05D008641 3.3e-14 81.6 80 57.5
CARHR031750 Cardamine hirsuta HOM05D006869 ORTHO05D008641 4.3e-14 81.3 85 56.5
Gorai.006G215800 Gossypium raimondii HOM05D006869 ORTHO05D008641 5.7e-14 80.9 118 45.8
Zm00001eb024260 Zea mays HOM05D006869 ORTHO05D008641 5.7e-14 80.9 90 53.3
Thhalv10009100m.g Eutrema salsugineum HOM05D006869 ORTHO05D008641 7.4e-14 80.5 80 56.2
ClCG09G012310 Citrullus lanatus HOM05D006869 ORTHO05D008641 9.7e-14 80.1 101 46.5
AT1G32370 Arabidopsis thaliana HOM05D006869 ORTHO05D008641 1.3e-13 79.7 84 56.0
BcaC05g27275 Brassica carinata HOM05D006869 ORTHO05D008641 2.8e-13 78.6 85 54.1
C05p31830 Brassica napus HOM05D006869 ORTHO05D008641 2.8e-13 78.6 85 54.1
BolC5t31911H Brassica oleracea HOM05D006869 ORTHO05D008641 2.8e-13 78.6 85 54.1
A09p33790 Brassica napus HOM05D006869 ORTHO05D008641 3.7e-13 78.2 85 54.1
BraA09t38929Z Brassica rapa HOM05D006869 ORTHO05D008641 3.7e-13 78.2 85 54.1
Carub.0001s3075 Capsella rubella HOM05D006869 ORTHO05D008641 3.7e-13 78.2 84 53.6
BcaB07g32921 Brassica carinata HOM05D006869 ORTHO05D008641 1.1e-12 76.6 84 52.4
Nitab4.5_0003100g0080 Nicotiana tabacum HOM05D006869 ORTHO05D008641 1.8e-12 75.9 107 43.9
Lsat_1_v5_gn_6_67180 Lactuca sativa HOM05D006869 ORTHO05D008641 2.6e-11 72.0 46 78.3
Oeu015441.1 Olea europaea HOM05D006869 ORTHO05D008641 4.5e-11 71.2 51 68.6
Psat1g009440 Pisum sativum HOM05D006869 ORTHO05D008641 7.7e-11 70.5 64 62.5
Haze_08288 Corylus avellana HOM05D006869 ORTHO05D008641 3.8e-10 68.2 44 75.0
AagrBONN_evm.TU.Sc2ySwM_228.2858 Anthoceros agrestis HOM05D006869 ORTHO05D008641 8.5e-10 67.0 77 46.8
vmacro23515 Vaccinium macrocarpon HOM05D006869 ORTHO05D008641 8.5e-10 67.0 42 78.6
Dinv28924 Davidia involucrata HOM05D002067 ORTHO05D002244 1.4e-09 66.2 82 50.0
Dinv25192 Davidia involucrata HOM05D006869 ORTHO05D008641 2.5e-09 65.5 99 46.5
vmacro14155 Vaccinium macrocarpon HOM05D006869 ORTHO05D008641 4.2e-09 64.7 41 78.0
BolC5t32616H Brassica oleracea HOM05D006869 ORTHO05D008641 5.5e-09 64.3 82 53.7
Ah.07g200090 Amaranthus hybridus HOM05D006869 ORTHO05D008641 7.2e-09 63.9 48 64.6
EL10Ac5g12174 Beta vulgaris HOM05D006869 ORTHO05D008641 1.6e-08 62.8 81 50.6
Rhsim07G0123600 Rhododendron simsii HOM05D006869 ORTHO05D008641 1.6e-08 62.8 49 65.3
Peaxi162Scf00497g00098 Petunia axillaris HOM05D006869 ORTHO05D008641 6.1e-08 60.8 43 69.8
MBI04_g13865_MAGBIO Magnolia biondii HOM05D006869 ORTHO05D008641 3.9e-07 58.2 43 65.1
Zm00001eb390630 Zea mays HOM05D006869 ORTHO05D008641 8.8e-07 57.0 55 56.4
Nitab4.5_0004658g0060 Nicotiana tabacum HOM05D006869 ORTHO05D008641 1.1e-06 56.6 48 58.3
Cc08_g02310 Coffea canephora HOM05D006869 ORTHO05D008641 2.6e-06 55.5 43 62.8
CBR_g6348 Chara braunii HOM05D006869 ORTHO05D008641 7.4e-06 53.9 76 40.8
SalBow6G5905 Salvia bowleyana HOM05D006869 ORTHO05D008641 7.4e-06 53.9 40 62.5


User provided reference genes

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