Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 3.6e-263 911.0 440 100.0
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 1.6e-226 789.3 436 84.9
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 3.8e-225 784.6 441 83.0
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 2.5e-224 781.9 435 83.0
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 6.8e-222 773.9 438 83.8
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 3.4e-221 771.5 436 82.1
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 2.9e-220 768.5 438 83.1
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 3.7e-220 768.1 453 81.0
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 5.4e-219 764.2 434 83.6
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 1.7e-217 759.2 437 81.5
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 2.3e-217 758.8 437 81.5
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 3.9e-217 758.1 438 80.8
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 8.6e-217 756.9 433 81.8
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.5e-216 756.1 434 82.0
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 5.6e-216 754.2 438 80.8
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 1.2e-215 753.1 431 81.2
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 1.6e-215 752.7 437 79.2
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 3.6e-215 751.5 433 81.8
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 6.2e-215 750.7 438 79.9
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 6.2e-215 750.7 438 81.5
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 6.2e-215 750.7 433 82.0
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 6.2e-215 750.7 438 80.6
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 1.8e-214 749.2 437 79.9
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 2.3e-214 748.8 438 80.6
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 3.1e-214 748.4 433 82.0
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 3.1e-214 748.4 429 81.1
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 4.0e-214 748.0 434 80.4
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 5.2e-214 747.7 433 81.8
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.6e-213 745.3 434 80.6
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.6e-213 745.3 434 80.6
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 2.6e-213 745.3 438 80.4
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 2.6e-213 745.3 434 80.4
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 2.6e-213 745.3 439 81.1
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 5.8e-213 744.2 438 79.9
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 5.8e-213 744.2 433 81.5
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 7.5e-213 743.8 433 81.1
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 1.3e-212 743.0 433 79.9
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 1.3e-212 743.0 434 80.0
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 2.2e-212 742.3 431 80.5
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 8.3e-212 740.3 429 80.0
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 1.1e-211 740.0 434 79.3
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 1.4e-211 739.6 438 78.3
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 1.4e-211 739.6 433 81.1
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 1.9e-211 739.2 441 77.3
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 3.2e-211 738.4 433 79.4
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 4.1e-211 738.0 434 80.0
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 4.1e-211 738.0 433 80.8
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 2.1e-210 735.7 429 79.5
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 2.7e-210 735.3 434 79.3
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 4.6e-210 734.6 431 78.9
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 1.0e-209 733.4 433 78.8
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 1.7e-209 732.6 433 79.4
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 2.3e-209 732.3 435 79.1
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 2.3e-209 732.3 435 79.1
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 2.3e-209 732.3 428 80.6
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 3.0e-209 731.9 435 79.1
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 3.0e-209 731.9 439 77.7
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 3.9e-209 731.5 434 78.8
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 3.9e-209 731.5 434 78.1
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 5.1e-209 731.1 435 78.9
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 6.6e-209 730.7 432 80.3
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 8.6e-209 730.3 438 77.4
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 8.6e-209 730.3 432 79.4
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 1.1e-208 729.9 432 79.2
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 1.9e-208 729.2 432 79.2
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 1.9e-208 729.2 433 77.6
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 2.5e-208 728.8 426 79.8
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 3.3e-208 728.4 432 79.2
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 3.3e-208 728.4 431 78.9
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 5.6e-208 727.6 430 78.8
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 7.3e-208 727.2 432 78.7
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 7.3e-208 727.2 435 77.9
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 1.6e-207 726.1 431 79.1
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 2.8e-207 725.3 432 78.2
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 2.3e-206 722.2 439 77.4
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 3.1e-206 721.8 432 78.9
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 4.0e-206 721.5 492 70.3
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 8.9e-206 720.3 447 76.7
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 9.9e-205 716.8 434 78.8
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 1.7e-204 716.1 427 78.2
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.4e-203 712.2 444 76.6
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 7.1e-203 710.7 431 77.5
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 1.6e-202 709.5 471 72.6
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 2.1e-202 709.1 523 67.5
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 7.8e-202 707.2 509 68.2
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 3.9e-201 704.9 433 76.0
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 6.6e-201 704.1 414 80.0
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 2.1e-199 699.1 409 80.7
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 2.8e-199 698.7 442 74.4
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 8.9e-198 693.7 432 73.8
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 1.2e-197 693.3 417 78.9
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 3.8e-196 688.3 432 73.1
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 8.4e-196 687.2 432 73.8
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 1.9e-195 686.0 439 73.6
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 7.3e-192 674.1 435 71.5
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 3.6e-191 671.8 392 80.6
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 4.0e-190 668.3 401 79.3
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 1.5e-189 666.4 403 76.9
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 5.8e-189 664.5 432 72.5
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 9.9e-189 663.7 435 71.7
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 1.3e-188 663.3 432 71.1
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 9.3e-187 657.1 435 70.1
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 2.3e-185 652.5 425 70.4
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 3.0e-185 652.1 438 73.7
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 9.9e-181 637.1 435 66.7
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 2.1e-178 629.4 340 86.5
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 6.0e-178 627.9 435 65.3
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.8e-177 626.3 433 65.1
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 1.2e-173 613.6 339 85.5
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 1.2e-173 613.6 330 86.7
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 2.0e-173 612.8 434 65.4
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 4.9e-172 608.2 425 63.8
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 3.8e-164 582.0 439 62.2
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 6.5e-164 581.3 337 80.1
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 1.1e-163 580.5 357 77.9
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 1.9e-163 579.7 383 73.6
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 7.1e-163 577.8 435 68.0
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 9.3e-163 577.4 439 61.0
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 8.5e-156 554.3 437 61.6
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 3.0e-153 545.8 430 60.5
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 2.8e-143 512.7 336 71.4
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 8.2e-143 511.1 289 83.0
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 5.3e-142 508.4 352 67.9
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 3.1e-134 482.6 387 62.8
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 1.6e-133 480.3 431 52.7
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 4.9e-111 405.6 352 61.1
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 1.2e-98 364.4 236 72.5
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 4.4e-96 355.9 225 75.1
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 4.1e-94 349.4 241 70.1
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 8.1e-74 282.0 188 72.3
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 8.1e-74 282.0 157 85.4
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 7.6e-72 275.4 197 70.6
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.2e-71 273.9 160 79.4
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 3.0e-68 263.5 145 85.5
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 4.6e-61 239.6 134 84.3
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.0e-55 221.9 230 55.2
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.5e-51 208.0 113 84.1
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 1.2e-48 198.4 107 79.4
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 1.8e-41 174.5 137 65.7
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 4.3e-35 153.3 88 80.7
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 4.8e-34 149.8 93 75.3
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 3.1e-33 147.1 166 48.8
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 2.2e-31 141.0 82 84.1
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 9.1e-25 119.0 67 77.6
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 1.3e-23 115.2 204 34.8
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 3.8e-23 113.6 245 34.7
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 1.1e-19 102.1 73 63.0
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 1.3e-18 98.6 62 74.2
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 2.2e-18 97.8 57 73.7
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 2.4e-17 94.4 78 56.4
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 2.2e-15 87.8 121 43.8
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 9.8e-11 72.4 36 83.3
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 3.7e-10 70.5 36 83.3
AUR62007284 Chenopodium quinoa HOM05D000077 ORTHO05D014281 1.1e-09 68.9 46 65.2
BraA03t11207Z Brassica rapa HOM05D002051 ORTHO05D002041 3.1e-09 67.4 379 21.9
EL10Ac3g06452 Beta vulgaris HOM05D002051 ORTHO05D002041 4.1e-09 67.0 399 22.8
DCAR_002347 Daucus carota HOM05D002051 ORTHO05D002041 5.4e-09 66.6 424 21.0
A03p19540 Brassica napus HOM05D002051 ORTHO05D002041 7.0e-09 66.2 379 21.9
SMO353G0042 Selaginella moellendorffii HOM05D019014 ORTHO05D379427 9.1e-09 65.9 69 52.2
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 5.9e-08 63.2 124 33.9
MD05G1143000 Malus domestica HOM05D002051 ORTHO05D002041 1.0e-07 62.4 307 23.1
RcHm_v2.0_Chr6g0281181 Rosa chinensis HOM05D002051 ORTHO05D002041 1.7e-07 61.6 425 21.6
Os01g0560000 Oryza sativa ssp. japonica HOM05D000617 ORTHO05D000478 2.9e-07 60.8 320 23.8
SHI07377 Sapria himalayana HOM05D004850 ORTHO05D005971 1.5e-06 58.5 35 71.4
CARHR129590 Cardamine hirsuta HOM05D002051 ORTHO05D002041 4.2e-06 57.0 165 25.5


User provided reference genes

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