Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0048G072 Amborella trichopoda HOM05D061989 ORTHO05D002080 2.7e-77 292.0 151 100.0
ATR0568G171 Amborella trichopoda HOM05D061989 ORTHO05D002080 9.0e-41 170.6 99 87.9
ATR0165G010 Amborella trichopoda HOM05D002099 ORTHO05D002080 7.7e-32 141.0 93 80.6
SEGI_09886 Sequoiadendron giganteum HOM05D002099 ORTHO05D002080 4.1e-25 118.6 149 43.0
MBI11_g19463_MAGBIO Magnolia biondii HOM05D002099 ORTHO05D002080 2.2e-23 112.8 129 49.6
TAR362G0096 Trochodendron aralioides HOM05D002099 ORTHO05D002080 1.1e-22 110.5 147 43.5
MBI11_g39359_MAGBIO Magnolia biondii HOM05D002099 ORTHO05D002080 5.5e-22 108.2 129 48.8
MD04G1244900 Malus domestica HOM05D002099 ORTHO05D002080 4.4e-19 98.6 152 37.5
Nn2g12612 Nelumbo nucifera HOM05D002099 ORTHO05D002080 7.4e-19 97.8 137 41.6
Prupe.6G361500 Prunus persica HOM05D002099 ORTHO05D002080 9.7e-19 97.4 129 40.3
PSO017G0082 Papaver somniferum HOM05D002099 ORTHO05D002080 8.2e-18 94.4 129 42.6
PSO675G9338 Papaver somniferum HOM05D002099 ORTHO05D002080 1.8e-17 93.2 129 41.9
Thecc.05G199100 Theobroma cacao HOM05D002099 ORTHO05D002080 1.6e-16 90.1 133 36.8
RcHm_v2.0_Chr3g0447871 Rosa chinensis HOM05D002099 ORTHO05D002080 3.5e-16 89.0 153 34.6
Ciclev10013740m.g Citrus clementina HOM05D002099 ORTHO05D002080 7.7e-16 87.8 134 37.3
Haze_02117 Corylus avellana HOM05D002099 ORTHO05D002080 1.0e-15 87.4 145 38.6
FvH4_6g00490 Fragaria vesca HOM05D002099 ORTHO05D002080 2.2e-15 86.3 133 36.1
FAN09G2981 Fragaria x ananassa HOM05D002099 ORTHO05D002080 2.2e-15 86.3 133 36.1
FAN14G4226 Fragaria x ananassa HOM05D002099 ORTHO05D002080 2.2e-15 86.3 133 36.1
Oeu046894.1 Olea europaea HOM05D002099 ORTHO05D002080 2.9e-15 85.9 121 38.8
Ca_07988_v3 Cicer arietinum L. HOM05D002099 ORTHO05D002080 3.8e-15 85.5 133 37.6
Aqoxy2G02749 Aquilegia oxysepala HOM05D002099 ORTHO05D002080 5.0e-15 85.1 122 37.7
Gohir.A05G391800 Gossypium hirsutum HOM05D002099 ORTHO05D002080 6.5e-15 84.7 141 34.8
Cfa006262 Carpinus fangiana HOM05D000001 ORTHO05D000003 8.5e-15 84.3 134 36.6
arahy.Tifrunner.gnm1.ann1.U4C2R0 Arachis hypogaea HOM05D002099 ORTHO05D002080 1.5e-14 83.6 133 39.8
CANSAT54G1934 Cannabis sativa HOM05D002099 ORTHO05D002080 1.5e-14 83.6 137 35.8
Lalb_Chr03g0038621 Lupinus albus HOM05D002099 ORTHO05D002080 1.9e-14 83.2 126 40.5
FAN05G4152 Fragaria x ananassa HOM05D002099 ORTHO05D002080 2.5e-14 82.8 145 36.6
arahy.Tifrunner.gnm1.ann1.05THYH Arachis hypogaea HOM05D002099 ORTHO05D002080 3.2e-14 82.4 133 39.1
Gorai.012G028100 Gossypium raimondii HOM05D002099 ORTHO05D002080 9.4e-14 80.9 141 32.6
PGR031G1225 Punica granatum HOM05D002099 ORTHO05D002080 9.4e-14 80.9 143 35.7
Lj1g0024785 Lotus japonicus HOM05D002099 ORTHO05D002080 1.2e-13 80.5 125 40.0
Glyma.09G250400 Glycine max HOM05D002099 ORTHO05D002080 2.1e-13 79.7 118 39.0
VMungo1383G2001 Vigna mungo HOM05D002099 ORTHO05D002080 2.7e-13 79.3 134 38.1
Atru.chr12.2088 Acer truncatum HOM05D002099 ORTHO05D002080 4.7e-13 78.6 132 37.1
CSS0048982 Camellia sinensis var. sinensis HOM05D002099 ORTHO05D002080 4.7e-13 78.6 79 45.6
Potri.013G085850 Populus trichocarpa HOM05D002099 ORTHO05D002080 4.7e-13 78.6 128 32.0
Gohir.D04G025500 Gossypium hirsutum HOM05D002099 ORTHO05D002080 8.0e-13 77.8 141 31.9
Cc09_g03650 Coffea canephora HOM05D002099 ORTHO05D002080 1.0e-12 77.4 122 37.7
Lj3A637T23 Lonicera japonica HOM05D002099 ORTHO05D002080 1.8e-12 76.6 128 35.9
Lsat_1_v5_gn_9_49060 Lactuca sativa HOM05D002099 ORTHO05D002080 2.3e-12 76.3 122 36.9
Dinv29097 Davidia involucrata HOM05D002099 ORTHO05D002080 6.7e-12 74.7 138 36.2
Phvul.008G054075 Phaseolus vulgaris HOM05D002099 ORTHO05D002080 1.2e-11 73.9 130 40.0
CAN.G1191.11 Capsicum annuum HOM05D002099 ORTHO05D002080 2.0e-11 73.2 121 32.2
CAN.G1191.12 Capsicum annuum HOM05D002099 ORTHO05D002080 2.0e-11 73.2 121 32.2
Glyma.18G242100 Glycine max HOM05D002099 ORTHO05D002080 3.3e-11 72.4 119 37.8
AL6G27400 Arabidopsis lyrata HOM05D002099 ORTHO05D002080 5.7e-11 71.6 123 35.8
Sabra13G0077900 Salix brachista HOM05D002099 ORTHO05D002080 5.7e-11 71.6 134 30.6
AT5G16460 Arabidopsis thaliana HOM05D002099 ORTHO05D002080 1.7e-10 70.1 123 35.0
Manes.12G005700 Manihot esculenta HOM05D002099 ORTHO05D002080 3.7e-10 68.9 133 31.6
SHI13718 Sapria himalayana HOM05D002099 ORTHO05D002080 8.2e-10 67.8 133 33.8
Psat3g138200 Pisum sativum HOM05D002099 ORTHO05D002080 1.4e-09 67.0 112 35.7
Carub.0006s1466 Capsella rubella HOM05D002099 ORTHO05D002080 3.1e-09 65.9 123 33.3
C02p08360 Brassica napus HOM05D002099 ORTHO05D002080 5.3e-09 65.1 131 35.1
Sopen04g025290 Solanum pennellii HOM05D002099 ORTHO05D002080 5.3e-09 65.1 123 32.5
Eucgr.H01389 Eucalyptus grandis HOM05D002099 ORTHO05D002080 9.1e-09 64.3 121 29.8
CsaV3_1G044520 Cucumis sativus L. HOM05D000081 ORTHO05D000036 1.2e-08 63.9 127 33.1
Medtr7g080030 Medicago truncatula HOM05D002099 ORTHO05D002080 1.2e-08 63.9 105 35.2
A03p07790 Brassica napus HOM05D002099 ORTHO05D002080 1.6e-08 63.5 131 32.8
BolC2t06753H Brassica oleracea HOM05D002099 ORTHO05D002080 1.6e-08 63.5 131 34.4
BraA03t10106Z Brassica rapa HOM05D002099 ORTHO05D002080 1.6e-08 63.5 131 32.8
Solyc04g056380.3 Solanum lycopersicum HOM05D002099 ORTHO05D002080 1.6e-08 63.5 122 31.1
BcaB01g04981 Brassica carinata HOM05D002099 ORTHO05D002080 2.0e-08 63.2 131 32.8
BolC3t13397H Brassica oleracea HOM05D002099 ORTHO05D002080 2.0e-08 63.2 131 32.8
Thhalv10015351m.g Eutrema salsugineum HOM05D002099 ORTHO05D002080 2.7e-08 62.8 131 31.3
TPR.G31800 Trifolium pratense HOM05D002099 ORTHO05D002080 2.7e-08 62.8 69 47.8
TWI36G0914 Tripterygium wilfordii HOM05D002099 ORTHO05D002080 2.7e-08 62.8 123 32.5
A02p03540 Brassica napus HOM05D002099 ORTHO05D002080 4.5e-08 62.0 131 33.6
Peaxi162Scf00048g00816 Petunia axillaris HOM05D002099 ORTHO05D002080 4.5e-08 62.0 117 32.5
PGSC0003DMG400007260 Solanum tuberosum HOM05D002099 ORTHO05D002080 4.5e-08 62.0 122 29.5
BraA02t05325Z Brassica rapa HOM05D002099 ORTHO05D002080 7.7e-08 61.2 131 33.6
C03p09010 Brassica napus HOM05D002099 ORTHO05D002080 1.0e-07 60.8 131 32.1
Aa31LG11G13200 Aethionema arabicum HOM05D002099 ORTHO05D002080 2.2e-07 59.7 123 31.7
Nitab4.5_0001435g0060 Nicotiana tabacum HOM05D002099 ORTHO05D002080 2.2e-07 59.7 123 31.7
Sp6g27720 Schrenkiella parvula HOM05D002099 ORTHO05D002080 5.0e-07 58.5 131 30.5
ECA232G1944 Erigeron canadensis HOM05D002099 ORTHO05D002080 6.5e-07 58.2 51 56.9
Rhsim05G0145900 Rhododendron simsii HOM05D002099 ORTHO05D002080 6.5e-07 58.2 111 33.3
CARHR196790 Cardamine hirsuta HOM05D002099 ORTHO05D002080 1.1e-06 57.4 136 27.9
DCAR_002121 Daucus carota HOM05D002099 ORTHO05D002080 1.5e-06 57.0 56 50.0
HanXRQChr05g0141781 Helianthus annuus HOM05D002099 ORTHO05D002080 2.5e-06 56.2 62 43.5
EL10Ac4g09964 Beta vulgaris HOM05D002099 ORTHO05D002080 3.2e-06 55.8 51 52.9
THA.LOC104827173 Tarenaya hassleriana HOM05D002099 ORTHO05D002080 9.4e-06 54.3 47 55.3


User provided reference genes

Program Settings