Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0048G011 Amborella trichopoda HOM05D002510 ORTHO05D006928 1.9e-161 572.4 279 100.0
GSVIVG01016268001 Vitis vinifera HOM05D002510 ORTHO05D006928 1.1e-89 334.0 268 60.1
Nn2g10810 Nelumbo nucifera HOM05D002510 ORTHO05D006928 1.5e-89 333.6 220 70.0
Dinv31320 Davidia involucrata HOM05D002510 ORTHO05D006928 4.3e-89 332.0 279 58.8
Manes.07G100200 Manihot esculenta HOM05D002510 ORTHO05D006928 4.3e-89 332.0 245 64.9
TAR369G0428 Trochodendron aralioides HOM05D002510 ORTHO05D006928 7.4e-89 331.3 229 65.9
Duzib114G0372 Durio zibethinus HOM05D002510 ORTHO05D006928 1.6e-88 330.1 279 57.7
Aqoxy1G01228 Aquilegia oxysepala HOM05D002510 ORTHO05D006928 2.1e-88 329.7 225 69.3
Eucgr.G02836 Eucalyptus grandis HOM05D002510 ORTHO05D006928 2.1e-88 329.7 249 62.7
Thecc.10G074800 Theobroma cacao HOM05D002510 ORTHO05D006928 3.7e-88 328.9 243 63.8
Lj5g0027397 Lotus japonicus HOM05D002510 ORTHO05D006928 1.4e-87 327.0 275 57.1
Glyma.10G210800 Glycine max HOM05D002510 ORTHO05D006928 2.4e-87 326.2 278 55.4
Glyma.20G179800 Glycine max HOM05D002510 ORTHO05D006928 4.1e-87 325.5 278 55.8
Potri.008G039300 Populus trichocarpa HOM05D002510 ORTHO05D006928 4.1e-87 325.5 225 65.3
Duzib128G0305 Durio zibethinus HOM05D002510 ORTHO05D006928 6.9e-87 324.7 242 62.4
Gohir.A10G205600 Gossypium hirsutum HOM05D002510 ORTHO05D006928 2.0e-86 323.2 228 64.5
Psat6g183480 Pisum sativum HOM05D002510 ORTHO05D006928 2.0e-86 323.2 277 56.3
CiPaw.01G272400 Carya illinoinensis HOM05D002510 ORTHO05D006928 4.5e-86 322.0 248 62.5
Medtr1g095000 Medicago truncatula HOM05D002510 ORTHO05D006928 5.9e-86 321.6 277 56.0
Prupe.2G213200 Prunus persica HOM05D002510 ORTHO05D006928 5.9e-86 321.6 224 65.2
Lalb_Chr02g0142201 Lupinus albus HOM05D002510 ORTHO05D006928 7.6e-86 321.2 221 65.2
CsaV3_6G036450 Cucumis sativus L. HOM05D002510 ORTHO05D006928 1.0e-85 320.9 251 60.6
TAR623G0044 Trochodendron aralioides HOM05D002510 ORTHO05D006928 1.0e-85 320.9 230 67.0
Cc02_g11320 Coffea canephora HOM05D002510 ORTHO05D006928 1.3e-85 320.5 257 61.9
MD01G1108300 Malus domestica HOM05D002510 ORTHO05D006928 1.3e-85 320.5 230 64.3
Phvul.007G094800 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 1.3e-85 320.5 271 56.5
QL08p055746 Quercus lobata HOM05D002510 ORTHO05D006928 1.7e-85 320.1 230 63.9
arahy.Tifrunner.gnm1.ann1.B5KM0B Arachis hypogaea HOM05D002510 ORTHO05D006928 2.2e-85 319.7 227 64.3
arahy.Tifrunner.gnm1.ann1.D0MVTX Arachis hypogaea HOM05D002510 ORTHO05D006928 2.2e-85 319.7 227 63.9
DCAR_019102 Daucus carota HOM05D002510 ORTHO05D006928 6.5e-85 318.2 268 58.2
RcHm_v2.0_Chr1g0363321 Rosa chinensis HOM05D002510 ORTHO05D006928 1.4e-84 317.0 277 54.9
Haze_16887 Corylus avellana HOM05D002510 ORTHO05D006928 1.9e-84 316.6 254 60.2
MELO3C019798.2 Cucumis melo HOM05D002510 ORTHO05D006928 1.9e-84 316.6 251 59.8
MD07G1174400 Malus domestica HOM05D002510 ORTHO05D006928 1.9e-84 316.6 224 64.7
Sabra08G0027000 Salix brachista HOM05D002510 ORTHO05D006928 1.9e-84 316.6 221 65.6
PSO063G7611 Papaver somniferum HOM05D002510 ORTHO05D006928 2.5e-84 316.2 224 64.7
Lj1C913T4 Lonicera japonica HOM05D002510 ORTHO05D006928 3.2e-84 315.8 226 64.6
Ca_10569_v3 Cicer arietinum L. HOM05D002800 ORTHO05D008563 5.5e-84 315.1 224 64.7
PGR142G1169 Punica granatum HOM05D002510 ORTHO05D006928 1.2e-83 313.9 245 60.8
Ciclev10032329m.g Citrus clementina HOM05D002510 ORTHO05D006928 1.6e-83 313.5 227 63.0
PSO339G5277 Papaver somniferum HOM05D002510 ORTHO05D006928 1.6e-83 313.5 224 64.7
Sp4g21360 Schrenkiella parvula HOM05D002510 ORTHO05D006928 2.1e-83 313.2 235 60.9
Atru.chr12.758 Acer truncatum HOM05D002510 ORTHO05D006928 2.7e-83 312.8 229 63.8
Thhalv10017009m.g Eutrema salsugineum HOM05D002510 ORTHO05D006928 4.6e-83 312.0 241 58.9
FAN01G2940 Fragaria x ananassa HOM05D002510 ORTHO05D007210 6.1e-83 311.6 227 62.1
ClCG08G007520 Citrullus lanatus HOM05D002510 ORTHO05D006928 7.9e-83 311.2 237 61.2
FAN03G1741 Fragaria x ananassa HOM05D002510 ORTHO05D006928 1.3e-82 310.5 233 61.4
Potri.010G222900 Populus trichocarpa HOM05D002510 ORTHO05D006928 1.3e-82 310.5 246 59.8
Sed0007153 Sechium edule HOM05D002510 ORTHO05D006928 1.3e-82 310.5 230 62.2
FvH4_7g19440 Fragaria vesca HOM05D002510 ORTHO05D006928 1.8e-82 310.1 233 60.9
Gorai.011G239300 Gossypium raimondii HOM05D002510 ORTHO05D006928 1.8e-82 310.1 245 59.6
CSS0017911 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 2.3e-82 309.7 221 65.2
FAN06G0282 Fragaria x ananassa HOM05D002510 ORTHO05D006928 2.3e-82 309.7 233 60.9
CAN.G131.8 Capsicum annuum HOM05D002510 ORTHO05D006928 3.9e-82 308.9 235 63.0
Gohir.D10G213800 Gossypium hirsutum HOM05D002510 ORTHO05D006928 5.1e-82 308.5 225 63.6
Oeu031347.1 Olea europaea HOM05D002510 ORTHO05D006928 5.1e-82 308.5 232 63.4
Sc20g0001820 Simmondsia chinensis HOM05D002510 ORTHO05D006928 6.7e-82 308.1 284 54.6
TWI15G0405 Tripterygium wilfordii HOM05D002510 ORTHO05D006928 8.7e-82 307.8 224 62.9
MSTRG.9172 Avicennia marina HOM05D002510 ORTHO05D006928 1.5e-81 307.0 248 60.5
Hund12054 Selenicereus undatus HOM05D002510 ORTHO05D006928 1.5e-81 307.0 238 60.5
Migut.F01984 Erythranthe guttata HOM05D002510 ORTHO05D006928 1.9e-81 306.6 235 60.4
Lsat_1_v5_gn_2_112320 Lactuca sativa HOM05D002510 ORTHO05D006928 1.9e-81 306.6 277 54.9
Nitab4.5_0002524g0010 Nicotiana tabacum HOM05D002510 ORTHO05D006928 1.9e-81 306.6 226 62.4
FAN10G0968 Fragaria x ananassa HOM05D002510 ORTHO05D007210 3.3e-81 305.8 233 60.5
FAN10G3768 Fragaria x ananassa HOM05D002510 ORTHO05D007210 3.3e-81 305.8 233 60.5
EL10Ac3g05855 Beta vulgaris HOM05D002510 ORTHO05D006928 4.3e-81 305.4 231 61.9
Nitab4.5_0001053g0060 Nicotiana tabacum HOM05D002510 ORTHO05D006928 4.3e-81 305.4 226 62.4
PGSC0003DMG400033889 Solanum tuberosum HOM05D002510 ORTHO05D006928 4.3e-81 305.4 223 63.2
CSS0006577 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 9.7e-81 304.3 232 60.8
Ah.10g032650 Amaranthus hybridus HOM05D002510 ORTHO05D006928 1.3e-80 303.9 226 63.7
CSS0041581 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 1.6e-80 303.5 232 60.8
HanXRQChr14g0456861 Helianthus annuus HOM05D002510 ORTHO05D006928 3.7e-80 302.4 272 54.4
Carub.0004s2104 Capsella rubella HOM05D002510 ORTHO05D006928 8.2e-80 301.2 230 59.1
Lalb_Chr06g0162351 Lupinus albus HOM05D002510 ORTHO05D006928 1.4e-79 300.4 221 62.0
THA.LOC104827063 Tarenaya hassleriana HOM05D002510 ORTHO05D006928 1.4e-79 300.4 224 60.7
AL4G36300 Arabidopsis lyrata HOM05D002510 ORTHO05D006928 1.8e-79 300.1 228 59.6
CARHR133780 Cardamine hirsuta HOM05D002510 ORTHO05D006928 5.3e-79 298.5 237 59.1
Actinidia06769 Actinidia chinensis HOM05D002510 ORTHO05D006928 6.9e-79 298.1 253 58.5
AT2G39000 Arabidopsis thaliana HOM05D002510 ORTHO05D006928 1.2e-78 297.4 226 59.7
HPP92_014717 Vanilla planifolia HOM05D002510 ORTHO05D006928 1.2e-78 297.4 241 58.5
Glyma.02G074000 Glycine max HOM05D002510 ORTHO05D006928 2.6e-78 296.2 261 56.3
AUR62037755 Chenopodium quinoa HOM05D002510 ORTHO05D006928 4.5e-78 295.4 225 62.2
Lj3g0006441 Lotus japonicus HOM05D002510 ORTHO05D006928 5.9e-78 295.0 228 61.4
BcaC02g12914 Brassica carinata HOM05D002510 ORTHO05D006928 1.3e-77 293.9 236 56.8
C04p67010 Brassica napus HOM05D002510 ORTHO05D006928 1.3e-77 293.9 236 56.8
BolC4t28203H Brassica oleracea HOM05D002510 ORTHO05D006928 1.3e-77 293.9 236 56.8
CDE04G1444 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 2.9e-77 292.7 226 61.5
Os02g0806000 Oryza sativa ssp. japonica HOM05D002510 ORTHO05D006928 2.9e-77 292.7 227 59.9
Actinidia38854 Actinidia chinensis HOM05D002510 ORTHO05D006928 1.1e-76 290.8 250 58.4
AUR62018249 Chenopodium quinoa HOM05D002510 ORTHO05D006928 1.4e-76 290.4 225 61.3
Sabra10G0172300 Salix brachista HOM05D002510 ORTHO05D006928 7.2e-76 288.1 224 59.4
BraA04t18437Z Brassica rapa HOM05D002510 ORTHO05D006928 2.7e-75 286.2 227 56.4
SGA_v2.0_scaffold62G21410 Striga asiatica HOM05D002510 ORTHO05D006928 1.8e-74 283.5 237 58.2
Lalb_Chr03g0035921 Lupinus albus HOM05D002510 ORTHO05D006928 6.7e-74 281.6 244 55.3
SEGI_15474 Sequoiadendron giganteum HOM05D002510 ORTHO05D006928 1.1e-73 280.8 215 61.4
Rhsim03G0120400 Rhododendron simsii HOM05D002510 ORTHO05D006928 3.3e-73 279.3 222 60.8
VMungo1197G0001 Vigna mungo HOM05D002510 ORTHO05D006928 3.3e-73 279.3 231 56.7
Phvul.004G083200 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 7.4e-73 278.1 229 58.1
arahy.Tifrunner.gnm1.ann1.DB5KD4 Arachis hypogaea HOM05D002510 ORTHO05D006928 2.2e-72 276.6 251 54.6
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 6.3e-72 275.0 244 55.7
A04p29730 Brassica napus HOM05D002510 ORTHO05D006928 8.2e-72 274.6 250 50.8
vmacro04869 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 8.2e-72 274.6 248 56.0
arahy.Tifrunner.gnm1.ann1.L5PTYD Arachis hypogaea HOM05D002510 ORTHO05D006928 2.4e-71 273.1 251 54.6
Migut.F01753 Erythranthe guttata HOM05D002510 ORTHO05D006928 4.5e-70 268.9 270 53.0
Lj3g0019343 Lotus japonicus HOM05D002510 ORTHO05D006928 1.0e-69 267.7 246 54.1
VMungo0464G1224 Vigna mungo HOM05D002510 ORTHO05D006928 1.8e-66 256.9 277 50.9
SalBow4G2249 Salvia bowleyana HOM05D002510 ORTHO05D006928 1.3e-64 250.8 240 52.1
unitig_88.g27817 Utricularia gibba HOM05D002510 ORTHO05D006928 1.1e-63 247.7 218 55.5
ECA238G3090 Erigeron canadensis HOM05D002510 ORTHO05D006928 1.7e-61 240.4 226 51.3
Peaxi162Scf01719g00013 Petunia axillaris HOM05D002510 ORTHO05D006928 2.2e-61 240.0 247 49.0
Cpa.g.sc53.85 Carica papaya HOM05D002510 ORTHO05D006928 4.7e-59 232.3 177 62.7
Atru.chr12.782 Acer truncatum HOM05D002510 ORTHO05D006928 1.8e-58 230.3 177 63.3
Dinv36437 Davidia involucrata HOM05D002510 ORTHO05D006928 5.2e-58 228.8 196 58.2
Gohir.D10G213900 Gossypium hirsutum HOM05D002510 ORTHO05D006928 2.6e-57 226.5 168 63.7
Gohir.A10G205500 Gossypium hirsutum HOM05D002510 ORTHO05D006928 7.0e-55 218.4 165 61.8
CDE06G2540 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 6.1e-51 205.3 154 62.3
SalBow3G0053 Salvia bowleyana HOM05D002510 ORTHO05D006928 2.6e-49 199.9 163 58.3
Oeu014386.1 Olea europaea HOM05D002510 ORTHO05D006928 4.4e-49 199.1 163 59.5
Mapoly0033s0159 Marchantia polymorpha HOM05D002510 ORTHO05D006928 2.0e-46 190.3 233 42.5
SMO134G0014 Selaginella moellendorffii HOM05D002510 ORTHO05D006928 8.6e-45 184.9 211 46.0
CAN.G790.5 Capsicum annuum HOM05D002510 ORTHO05D006928 6.8e-42 175.3 136 61.0
Aa31LG5G20680 Aethionema arabicum HOM05D002510 ORTHO05D006928 9.8e-41 171.4 132 56.8
Zm00001eb172140 Zea mays HOM05D002510 ORTHO05D006928 3.1e-39 166.4 175 49.7
vmacro07070 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 1.0e-37 161.4 136 55.9
Sopen04g011630 Solanum pennellii HOM05D002510 ORTHO05D006928 2.1e-35 153.7 137 53.3
Solyc04g025240.2 Solanum lycopersicum HOM05D002510 ORTHO05D006928 3.6e-35 152.9 136 55.9
Glyma.16G155400 Glycine max HOM05D002510 ORTHO05D006928 4.0e-34 149.4 168 46.4
Lj2g0015916 Lotus japonicus HOM05D002510 ORTHO05D006928 1.6e-30 137.5 168 47.0
Solyc04g025230.1 Solanum lycopersicum HOM05D002510 ORTHO05D006928 1.5e-28 131.0 90 65.6
Ciclev10024578m.g Citrus clementina HOM05D002510 ORTHO05D006928 3.1e-18 96.7 89 51.7
AagrBONN_evm.TU.Sc2ySwM_117.96 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.3e-16 91.3 127 42.5
Nn3g20716 Nelumbo nucifera HOM05D002510 ORTHO05D006928 3.7e-16 89.7 139 39.6
Haze_18780 Corylus avellana HOM05D000278 ORTHO05D005754 1.1e-15 88.2 129 39.5
Actinidia32448 Actinidia chinensis HOM05D002510 ORTHO05D006928 3.2e-15 86.7 62 66.1
Cre16.g662650 Chlamydomonas reinhardtii HOM05D002510 ORTHO05D006928 4.6e-14 82.8 246 29.3
PRCOL_00005349 Prasinoderma coloniale HOM05D002510 ORTHO05D006928 8.9e-10 68.6 87 43.7
Cre13.g581150 Chlamydomonas reinhardtii HOM05D005733 ORTHO05D006928 5.8e-09 65.9 111 36.0
A03p21800 Brassica napus HOM05D002510 ORTHO05D006928 7.6e-09 65.5 116 32.8
MCO13G231 Micromonas commoda HOM05D005733 ORTHO05D006928 4.9e-08 62.8 72 41.7
SHI29591 Sapria himalayana HOM05D004822 ORTHO05D005632 2.1e-06 57.4 78 42.3
Mapoly0005s0071 Marchantia polymorpha HOM05D006231 ORTHO05D007857 6.0e-06 55.8 68 38.2
arahy.Tifrunner.gnm1.ann1.XHC94G Arachis hypogaea HOM05D004023 ORTHO05D004681 7.8e-06 55.5 73 42.5


User provided reference genes

Program Settings