Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0037G029 Amborella trichopoda HOM05D007258 ORTHO05D008852 6.6e-67 257.3 135 100.0
vmacro18138 Vaccinium macrocarpon HOM05D007258 ORTHO05D008852 7.4e-18 94.4 103 52.4
Nn4g23475 Nelumbo nucifera HOM05D007258 ORTHO05D008852 8.1e-17 90.9 97 56.7
CSS0017666 Camellia sinensis var. sinensis HOM05D007258 ORTHO05D008852 3.1e-16 89.0 103 56.3
MSTRG.15441 Avicennia marina HOM05D007258 ORTHO05D008852 4.0e-16 88.6 94 57.4
PSO017G7301 Papaver somniferum HOM05D007258 ORTHO05D008852 6.9e-16 87.8 85 56.5
Aqoxy3G00517 Aquilegia oxysepala HOM05D007258 ORTHO05D008852 9.0e-16 87.4 96 55.2
HPP92_001847 Vanilla planifolia HOM05D007258 ORTHO05D008852 2.0e-15 86.3 56 75.0
Haze_03284 Corylus avellana HOM05D007258 ORTHO05D008852 3.4e-15 85.5 109 56.9
CAN.G497.87 Capsicum annuum HOM05D007258 ORTHO05D008852 4.5e-15 85.1 92 55.4
Lalb_Chr21g0318311 Lupinus albus HOM05D007258 ORTHO05D008852 7.6e-15 84.3 56 73.2
Manes.02G057800 Manihot esculenta HOM05D007258 ORTHO05D008852 7.6e-15 84.3 56 75.0
PGR004G1744 Punica granatum HOM05D007258 ORTHO05D008852 7.6e-15 84.3 62 67.7
Solyc02g089100.3 Solanum lycopersicum HOM05D007258 ORTHO05D008852 7.6e-15 84.3 85 57.6
TAR374G0815 Trochodendron aralioides HOM05D007258 ORTHO05D008852 7.6e-15 84.3 106 54.7
PSO478G0672 Papaver somniferum HOM05D007258 ORTHO05D008852 9.9e-15 84.0 105 47.6
PGSC0003DMG400001370 Solanum tuberosum HOM05D007258 ORTHO05D008852 9.9e-15 84.0 94 54.3
THA.LOC104802980 Tarenaya hassleriana HOM05D007258 ORTHO05D008852 9.9e-15 84.0 52 76.9
TPR.G4313 Trifolium pratense HOM05D007258 ORTHO05D008852 9.9e-15 84.0 73 61.6
MELO3C022042.2 Cucumis melo HOM05D007258 ORTHO05D008852 1.3e-14 83.6 103 49.5
CsaV3_5G038620 Cucumis sativus L. HOM05D007258 ORTHO05D008852 1.3e-14 83.6 93 52.7
Nitab4.5_0009044g0050 Nicotiana tabacum HOM05D007258 ORTHO05D008852 1.3e-14 83.6 93 53.8
Ca_20770_v3 Cicer arietinum L. HOM05D000600 ORTHO05D000432 1.7e-14 83.2 83 54.2
unitig_32.g11768 Utricularia gibba HOM05D007258 ORTHO05D008852 1.7e-14 83.2 56 73.2
Cpa.g.sc14.201 Carica papaya HOM05D007258 ORTHO05D008852 2.9e-14 82.4 102 48.0
Hma1.2p1_0069F.1_g037420 Hydrangea macrophylla HOM05D007258 ORTHO05D008852 2.9e-14 82.4 93 54.8
Sopen02g033890 Solanum pennellii HOM05D007258 ORTHO05D008852 2.9e-14 82.4 92 53.3
Phvul.004G041100 Phaseolus vulgaris HOM05D007258 ORTHO05D008852 3.8e-14 82.0 75 57.3
Psat1g066400 Pisum sativum HOM05D007258 ORTHO05D008852 3.8e-14 82.0 85 57.6
SEGI_23358 Sequoiadendron giganteum HOM05D007258 ORTHO05D008852 3.8e-14 82.0 94 53.2
SEGI_41097 Sequoiadendron giganteum HOM05D007258 ORTHO05D008852 3.8e-14 82.0 94 53.2
Sc11g0008720 Simmondsia chinensis HOM05D007258 ORTHO05D008852 3.8e-14 82.0 102 52.0
Eucgr.L02288 Eucalyptus grandis HOM05D007258 ORTHO05D008852 6.4e-14 81.3 125 44.8
QL02p066408 Quercus lobata HOM05D007258 ORTHO05D008852 8.4e-14 80.9 94 55.3
Prupe.3G250800 Prunus persica HOM05D007258 ORTHO05D008852 1.1e-13 80.5 56 71.4
Haze_25378 Corylus avellana HOM05D007258 ORTHO05D008852 1.4e-13 80.1 72 63.9
Duzib138G1000 Durio zibethinus HOM05D007258 ORTHO05D008852 1.9e-13 79.7 85 55.3
ECA232G3790 Erigeron canadensis HOM05D007258 ORTHO05D008852 1.9e-13 79.7 96 50.0
Sabra04G0070300 Salix brachista HOM05D000830 ORTHO05D008852 1.9e-13 79.7 56 66.1
Thecc.04G103600 Theobroma cacao HOM05D007258 ORTHO05D008852 1.9e-13 79.7 68 60.3
Migut.K01261 Erythranthe guttata HOM05D007258 ORTHO05D008852 2.4e-13 79.3 105 48.6
HanXRQChr09g0264921 Helianthus annuus HOM05D007258 ORTHO05D008852 2.4e-13 79.3 99 50.5
Lsat_1_v5_gn_4_173160 Lactuca sativa HOM05D007258 ORTHO05D008852 2.4e-13 79.3 99 45.5
Potri.004G116800 Populus trichocarpa HOM05D007258 ORTHO05D008852 2.4e-13 79.3 114 45.6
Eucgr.I02051 Eucalyptus grandis HOM05D007258 ORTHO05D008852 3.2e-13 79.0 125 44.0
Glyma.19G033200 Glycine max HOM05D007258 ORTHO05D008852 3.2e-13 79.0 82 57.3
Gohir.D07G187600 Gossypium hirsutum HOM05D007258 ORTHO05D008852 3.2e-13 79.0 87 56.3
CiPaw.03G085000 Carya illinoinensis HOM05D007258 ORTHO05D008852 4.2e-13 78.6 105 51.4
Oeu004419.1 Olea europaea HOM05D007258 ORTHO05D008852 4.2e-13 78.6 52 73.1
AT3G02220 Arabidopsis thaliana HOM05D007258 ORTHO05D008852 5.5e-13 78.2 63 69.8
Carub.0003s0134 Capsella rubella HOM05D007258 ORTHO05D008852 5.5e-13 78.2 67 67.2
Medtr6g015855 Medicago truncatula HOM05D007258 ORTHO05D008852 5.5e-13 78.2 90 50.0
SGA_v2.0_scaffold148G36428 Striga asiatica HOM05D003455 ORTHO05D004165 7.1e-13 77.8 96 49.0
GSVIVG01036568001 Vitis vinifera HOM05D007258 ORTHO05D008852 7.1e-13 77.8 76 57.9
AL3G11470 Arabidopsis lyrata HOM05D007258 ORTHO05D008852 9.3e-13 77.4 63 68.3
Ciclev10012686m.g Citrus clementina HOM05D007258 ORTHO05D008852 9.3e-13 77.4 92 51.1
VMungo0464G1058 Vigna mungo HOM05D007258 ORTHO05D008852 9.3e-13 77.4 75 54.7
Cfa010690 Carpinus fangiana HOM05D007258 ORTHO05D008852 1.2e-12 77.0 52 76.9
COL.COLO4_03895 Corchorus olitorius HOM05D007258 ORTHO05D008852 1.2e-12 77.0 52 71.2
Rhsim08G0075900 Rhododendron simsii HOM05D007258 ORTHO05D008852 1.2e-12 77.0 101 48.5
Os01g0763000 Oryza sativa ssp. japonica HOM05D007258 ORTHO05D008852 1.6e-12 76.6 100 47.0
arahy.Tifrunner.gnm1.ann1.GI8EHX Arachis hypogaea HOM05D007258 ORTHO05D008852 2.1e-12 76.3 56 67.9
Aa31LG5G12750 Aethionema arabicum HOM05D007258 ORTHO05D008852 2.7e-12 75.9 67 65.7
Gorai.001G208500 Gossypium raimondii HOM05D007258 ORTHO05D008852 2.7e-12 75.9 87 55.2
Sed0003620 Sechium edule HOM05D007258 ORTHO05D008852 2.7e-12 75.9 96 47.9
arahy.Tifrunner.gnm1.ann1.TJ02B2 Arachis hypogaea HOM05D007258 ORTHO05D008852 3.5e-12 75.5 56 67.9
Haze_14398 Corylus avellana HOM05D000041 ORTHO05D000061 3.5e-12 75.5 54 70.4
Thhalv10021265m.g Eutrema salsugineum HOM05D007258 ORTHO05D008852 3.5e-12 75.5 52 73.1
Sp3g01290 Schrenkiella parvula HOM05D007258 ORTHO05D008852 3.5e-12 75.5 52 73.1
MD17G1063700 Malus domestica HOM05D007258 ORTHO05D008852 4.6e-12 75.1 93 50.5
Hund16216 Selenicereus undatus HOM05D007258 ORTHO05D008852 4.6e-12 75.1 92 53.3
RcHm_v2.0_Chr2g0165201 Rosa chinensis HOM05D007258 ORTHO05D008852 6.0e-12 74.7 104 48.1
BcaC05g30335 Brassica carinata HOM05D007258 ORTHO05D008852 7.9e-12 74.3 52 73.1
A05p45100 Brassica napus HOM05D007258 ORTHO05D008852 7.9e-12 74.3 52 73.1
C09p75600 Brassica napus HOM05D007258 ORTHO05D008852 7.9e-12 74.3 52 73.1
BolC5t35098H Brassica oleracea HOM05D007258 ORTHO05D008852 7.9e-12 74.3 52 73.1
Cc07_g04400 Coffea canephora HOM05D007258 ORTHO05D008852 7.9e-12 74.3 100 46.0
TWI34G1392 Tripterygium wilfordii HOM05D007258 ORTHO05D008852 1.0e-11 73.9 86 51.2
CDE07G1188 Ceratophyllum demersum HOM05D007258 ORTHO05D008852 1.3e-11 73.6 93 52.7
FAN02G1393 Fragaria x ananassa HOM05D000830 ORTHO05D008852 1.3e-11 73.6 58 65.5
BcaC05g30334 Brassica carinata HOM05D007258 ORTHO05D008852 1.8e-11 73.2 91 51.6
CARHR076190 Cardamine hirsuta HOM05D007258 ORTHO05D008852 1.8e-11 73.2 91 52.7
Lj2g0017705 Lotus japonicus HOM05D007258 ORTHO05D008852 1.8e-11 73.2 102 46.1
FvH4_6g46551 Fragaria vesca HOM05D007258 ORTHO05D008852 2.3e-11 72.8 94 46.8
FAN05G4223 Fragaria x ananassa HOM05D000830 ORTHO05D008852 2.3e-11 72.8 94 46.8
FAN09G2101 Fragaria x ananassa HOM05D000830 ORTHO05D008852 3.0e-11 72.4 93 47.3
Glyma.13G053500 Glycine max HOM05D007258 ORTHO05D008852 3.0e-11 72.4 128 39.8
AUR62009496 Chenopodium quinoa HOM05D007258 ORTHO05D008852 8.7e-11 70.9 94 48.9
Zm00001eb152360 Zea mays HOM05D007258 ORTHO05D008852 8.7e-11 70.9 65 53.8
CDE04G0513 Ceratophyllum demersum HOM05D007258 ORTHO05D008852 1.1e-10 70.5 104 46.2
CANSAT64G1331 Cannabis sativa HOM05D007258 ORTHO05D008852 7.4e-10 67.8 95 48.4
BraA05t23151Z Brassica rapa HOM05D007258 ORTHO05D008852 1.6e-09 66.6 114 42.1
MD17G1063100 Malus domestica HOM05D007258 ORTHO05D008852 6.2e-09 64.7 102 43.1
FAN14G1076 Fragaria x ananassa HOM05D000830 ORTHO05D008852 8.2e-09 64.3 105 41.9
EL10Ac2g04457 Beta vulgaris HOM05D007258 ORTHO05D008852 3.1e-08 62.4 84 46.4
Actinidia26259 Actinidia chinensis HOM05D007258 ORTHO05D008852 5.3e-08 61.6 90 50.0
Pp3c24_10 Physcomitrium patens HOM05D007258 ORTHO05D008852 6.5e-06 54.7 93 38.7


User provided reference genes

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