Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0033G036 Amborella trichopoda HOM05D003665 ORTHO05D004387 0.0e+00 1374.4 689 100.0
MBI05_g08786_MAGBIO Magnolia biondii HOM05D003665 ORTHO05D004387 2.4e-229 799.3 545 76.5
TAR623G1097 Trochodendron aralioides HOM05D003665 ORTHO05D004387 1.4e-226 790.0 510 79.6
CSS0036787 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 7.4e-223 777.7 590 69.2
Nn2g12882 Nelumbo nucifera HOM05D003665 ORTHO05D004387 3.1e-221 772.3 538 74.5
vmacro03198 Vaccinium macrocarpon HOM05D003665 ORTHO05D004387 4.0e-221 771.9 506 77.9
CSS0007464 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 5.8e-220 768.1 490 78.6
Cfa011312 Carpinus fangiana HOM05D003665 ORTHO05D004387 1.4e-218 763.5 493 78.1
MD11G1136600 Malus domestica HOM05D003665 ORTHO05D004387 1.9e-218 763.1 494 78.3
TAR369G0153 Trochodendron aralioides HOM05D003665 ORTHO05D004387 1.2e-217 760.4 467 81.2
Duzib168G1080 Durio zibethinus HOM05D003665 ORTHO05D004387 3.5e-217 758.8 476 78.8
GSVIVG01025191001 Vitis vinifera HOM05D003665 ORTHO05D004387 3.5e-217 758.8 509 76.8
Actinidia24103 Actinidia chinensis HOM05D003665 ORTHO05D004387 7.9e-217 757.7 453 82.6
Duzib170G0108 Durio zibethinus HOM05D003665 ORTHO05D004387 1.0e-216 757.3 563 70.5
RcHm_v2.0_Chr5g0058821 Rosa chinensis HOM05D003665 ORTHO05D004387 2.3e-216 756.1 494 77.9
Gorai.009G107400 Gossypium raimondii HOM05D003665 ORTHO05D004387 3.0e-216 755.7 501 75.8
Hma1.2p1_0058F.1_g032480 Hydrangea macrophylla HOM05D003665 ORTHO05D004387 3.0e-216 755.7 470 80.9
Aqoxy4G03025 Aquilegia oxysepala HOM05D003665 ORTHO05D004387 3.9e-216 755.4 531 73.1
Potri.009G014400 Populus trichocarpa HOM05D003665 ORTHO05D004387 8.7e-216 754.2 504 75.6
Eucgr.B02502 Eucalyptus grandis HOM05D003665 ORTHO05D004387 1.1e-215 753.8 490 77.1
Thecc.09G341400 Theobroma cacao HOM05D003665 ORTHO05D004387 1.9e-215 753.1 476 77.9
Gohir.D05G103100 Gossypium hirsutum HOM05D003665 ORTHO05D004387 2.5e-215 752.7 501 75.6
Potri.004G211200 Populus trichocarpa HOM05D003665 ORTHO05D004387 2.5e-215 752.7 459 80.8
CiPaw.13G113600 Carya illinoinensis HOM05D003665 ORTHO05D004387 4.3e-215 751.9 496 77.0
Prupe.6G102100 Prunus persica HOM05D003665 ORTHO05D004387 2.8e-214 749.2 456 80.9
Gohir.A03G033500 Gossypium hirsutum HOM05D003665 ORTHO05D004387 3.7e-214 748.8 526 72.6
MD03G1118200 Malus domestica HOM05D003665 ORTHO05D004387 4.8e-214 748.4 459 81.3
Cpa.g.sc216.2 Carica papaya HOM05D003665 ORTHO05D004387 8.2e-214 747.7 472 77.5
CiPaw.14G080900 Carya illinoinensis HOM05D003665 ORTHO05D004387 8.2e-214 747.7 572 70.1
Manes.11G145800 Manihot esculenta HOM05D003665 ORTHO05D004387 8.2e-214 747.7 469 80.0
FAN25G3303 Fragaria x ananassa HOM05D003665 ORTHO05D004387 1.1e-213 747.3 495 76.6
Ciclev10028088m.g Citrus clementina HOM05D003665 ORTHO05D004387 1.8e-213 746.5 500 74.0
Gorai.003G141900 Gossypium raimondii HOM05D003665 ORTHO05D004387 1.8e-213 746.5 526 72.6
PSO384G0045 Papaver somniferum HOM05D003665 ORTHO05D004387 1.8e-213 746.5 498 76.9
CsaV3_1G014040 Cucumis sativus L. HOM05D003665 ORTHO05D004387 2.4e-213 746.1 495 76.4
MELO3C004874.2 Cucumis melo HOM05D003665 ORTHO05D004387 3.1e-213 745.7 495 76.4
PSO339G3164 Papaver somniferum HOM05D003665 ORTHO05D004387 3.1e-213 745.7 498 76.9
Solyc03g115810.3 Solanum lycopersicum HOM05D003665 ORTHO05D004387 4.1e-213 745.3 591 66.7
Atru.chr3.3622 Acer truncatum HOM05D003665 ORTHO05D004387 6.9e-213 744.6 507 74.0
Sopen03g034790 Solanum pennellii HOM05D003665 ORTHO05D004387 1.2e-212 743.8 591 66.5
FvH4_3g32210 Fragaria vesca HOM05D003665 ORTHO05D004387 1.5e-212 743.4 495 76.4
Gohir.D03G134800 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.5e-212 743.4 526 72.4
Cc00_g12880 Coffea canephora HOM05D003665 ORTHO05D004387 3.4e-212 742.3 514 73.2
ClCG01G013730 Citrullus lanatus HOM05D003665 ORTHO05D004387 4.5e-212 741.9 498 75.5
PGR119G2069 Punica granatum HOM05D003665 ORTHO05D004387 7.6e-212 741.1 490 75.7
FAN21G1776 Fragaria x ananassa HOM05D003665 ORTHO05D004387 1.3e-211 740.3 496 76.6
QL01p022122 Quercus lobata HOM05D003665 ORTHO05D004387 2.2e-211 739.6 433 83.8
SalBow3G4611 Salvia bowleyana HOM05D003665 ORTHO05D004387 2.2e-211 739.6 535 70.8
FAN11G0686 Fragaria x ananassa HOM05D003665 ORTHO05D004387 2.9e-211 739.2 507 75.0
Sed0022671 Sechium edule HOM05D003665 ORTHO05D004387 5.0e-211 738.4 494 75.7
Glyma.13G325700 Glycine max HOM05D003665 ORTHO05D004387 6.5e-211 738.0 498 75.7
MSTRG.18661 Avicennia marina HOM05D003665 ORTHO05D004387 1.4e-210 736.9 600 64.7
Glyma.12G172200 Glycine max HOM05D003665 ORTHO05D004387 1.4e-210 736.9 498 75.3
Gohir.A05G103400 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.4e-210 736.9 539 71.4
TWI31G1339 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 1.4e-210 736.9 576 66.5
FAN16G1206 Fragaria x ananassa HOM05D003665 ORTHO05D004387 4.2e-210 735.3 495 76.6
Phvul.011G079600 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 7.2e-210 734.6 517 72.7
Lj3g0004290 Lotus japonicus HOM05D003665 ORTHO05D004387 9.3e-210 734.2 514 73.2
EL10Ac2g02422 Beta vulgaris HOM05D003665 ORTHO05D004387 7.9e-209 731.1 541 70.1
Phvul.005G134800 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 1.8e-208 729.9 492 74.4
SGA_v2.0_scaffold97G29239 Striga asiatica HOM05D003665 ORTHO05D004387 3.0e-208 729.2 584 65.6
Ca_19262_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 3.9e-208 728.8 458 77.9
Haze_23819 Corylus avellana HOM05D003665 ORTHO05D004387 6.7e-208 728.0 529 72.0
VMungo1127G1530 Vigna mungo HOM05D003665 ORTHO05D004387 6.7e-208 728.0 518 71.8
CANSAT54G1114 Cannabis sativa HOM05D003665 ORTHO05D004387 1.1e-207 727.2 510 71.8
Dinv09884 Davidia involucrata HOM05D003665 ORTHO05D004387 1.5e-207 726.9 527 72.7
Migut.D02227 Erythranthe guttata HOM05D003665 ORTHO05D004387 2.2e-206 723.0 497 72.8
Medtr4g059000 Medicago truncatula HOM05D003665 ORTHO05D004387 9.0e-205 717.6 502 71.7
HanXRQChr01g0019371 Helianthus annuus HOM05D003665 ORTHO05D004387 1.2e-204 717.2 507 73.4
Sabra09G0007600 Salix brachista HOM05D003665 ORTHO05D004387 1.2e-204 717.2 585 65.6
Medtr2g094470 Medicago truncatula HOM05D003665 ORTHO05D004387 4.5e-204 715.3 501 72.1
TPR.G11547 Trifolium pratense HOM05D003665 ORTHO05D004387 4.5e-204 715.3 494 73.5
Psat5g278960 Pisum sativum HOM05D003665 ORTHO05D004387 7.7e-204 714.5 494 73.3
ECA248G0778 Erigeron canadensis HOM05D003665 ORTHO05D004387 1.0e-203 714.1 496 74.0
Nitab4.5_0001997g0130 Nicotiana tabacum HOM05D003665 ORTHO05D004387 1.3e-203 713.8 442 78.3
SGA_v2.0_scaffold61G21127 Striga asiatica HOM05D003665 ORTHO05D004387 5.0e-203 711.8 598 62.9
VMungo1080G0406 Vigna mungo HOM05D003665 ORTHO05D004387 1.4e-202 710.3 492 72.4
Lalb_Chr19g0137231 Lupinus albus HOM05D003665 ORTHO05D004387 4.2e-202 708.8 469 74.2
Gorai.004G229200 Gossypium raimondii HOM05D003665 ORTHO05D004387 3.6e-201 705.7 521 70.1
Lalb_Chr22g0350251 Lupinus albus HOM05D003665 ORTHO05D004387 1.4e-200 703.7 574 65.3
Lalb_Chr24g0394651 Lupinus albus HOM05D003665 ORTHO05D004387 1.8e-200 703.4 501 72.3
ECA238G1380 Erigeron canadensis HOM05D003665 ORTHO05D004387 3.0e-200 702.6 578 64.0
Gohir.A08G198200 Gossypium hirsutum HOM05D003665 ORTHO05D004387 3.0e-200 702.6 557 66.6
TWI79G0002 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 3.9e-200 702.2 423 80.9
Lj3g0015527 Lotus japonicus HOM05D003665 ORTHO05D004387 2.0e-199 699.9 503 70.8
Peaxi162Scf00274g00347 Petunia axillaris HOM05D003665 ORTHO05D004387 2.0e-199 699.9 497 72.2
THA.LOC104826364 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 1.7e-198 696.8 502 70.7
SEGI_12034 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 1.8e-197 693.3 515 69.9
Actinidia07137 Actinidia chinensis HOM05D003665 ORTHO05D004387 2.4e-197 693.0 399 86.0
THA.LOC104815747 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 3.1e-197 692.6 590 61.5
Psat0s134g0040 Pisum sativum HOM05D003665 ORTHO05D004387 5.0e-195 685.3 462 74.2
Dinv32740 Davidia involucrata HOM05D003665 ORTHO05D004387 6.5e-195 684.9 516 70.3
Thhalv10016386m.g Eutrema salsugineum HOM05D003665 ORTHO05D004387 5.5e-194 681.8 499 68.9
Oeu030188.3 Olea europaea HOM05D003665 ORTHO05D004387 5.5e-194 681.8 634 58.8
DCAR_006064 Daucus carota HOM05D003665 ORTHO05D004387 7.2e-194 681.4 489 73.0
BcaC01g04965 Brassica carinata HOM05D003665 ORTHO05D004387 9.4e-194 681.0 555 62.2
Sc06g0010260 Simmondsia chinensis HOM05D003665 ORTHO05D004387 1.2e-193 680.6 431 78.7
arahy.Tifrunner.gnm1.ann1.567MYZ Arachis hypogaea HOM05D003665 ORTHO05D004387 2.1e-193 679.9 455 74.3
Nitab4.5_0001195g0040 Nicotiana tabacum HOM05D003665 ORTHO05D004387 3.6e-193 679.1 489 69.1
Sp4g11190 Schrenkiella parvula HOM05D003665 ORTHO05D004387 7.9e-193 677.9 498 68.7
COL.COLO4_18330 Corchorus olitorius HOM05D003665 ORTHO05D004387 1.0e-192 677.6 476 72.3
CARHR121340 Cardamine hirsuta HOM05D003665 ORTHO05D004387 1.5e-191 673.7 503 66.8
arahy.Tifrunner.gnm1.ann1.IYQC31 Arachis hypogaea HOM05D003665 ORTHO05D004387 2.6e-191 672.9 509 68.0
BolC3t15507H Brassica oleracea HOM05D003665 ORTHO05D004387 3.3e-191 672.5 566 61.0
Carub.0004s0931 Capsella rubella HOM05D003665 ORTHO05D004387 3.3e-191 672.5 491 67.6
AL4G21640 Arabidopsis lyrata HOM05D003665 ORTHO05D004387 5.7e-191 671.8 503 67.6
arahy.Tifrunner.gnm1.ann1.RTB9TW Arachis hypogaea HOM05D003665 ORTHO05D004387 7.4e-191 671.4 507 67.9
A03p26380 Brassica napus HOM05D003665 ORTHO05D004387 3.7e-190 669.1 496 67.1
BraA03t11853Z Brassica rapa HOM05D003665 ORTHO05D004387 4.8e-190 668.7 496 67.1
C04p23090 Brassica napus HOM05D003665 ORTHO05D004387 6.3e-190 668.3 489 68.1
BcaB01g03101 Brassica carinata HOM05D003665 ORTHO05D004387 1.4e-189 667.2 514 65.0
Lsat_1_v5_gn_1_64201 Lactuca sativa HOM05D003665 ORTHO05D004387 1.4e-189 667.2 507 69.2
HanXRQChr14g0452781 Helianthus annuus HOM05D003665 ORTHO05D004387 3.1e-189 666.0 564 61.5
AT2G28390 Arabidopsis thaliana HOM05D003665 ORTHO05D004387 9.1e-189 664.5 488 68.0
BolC4t23802H Brassica oleracea HOM05D003665 ORTHO05D004387 9.1e-189 664.5 492 67.3
Os01g0976000 Oryza sativa ssp. japonica HOM05D003665 ORTHO05D004387 9.1e-189 664.5 494 68.6
C03p31650 Brassica napus HOM05D003665 ORTHO05D004387 1.6e-188 663.7 568 60.6
Aa31LG5G7830 Aethionema arabicum HOM05D003665 ORTHO05D004387 2.0e-188 663.3 498 67.7
A07p18960 Brassica napus HOM05D003665 ORTHO05D004387 2.0e-188 663.3 488 68.2
Lsat_1_v5_gn_2_100120 Lactuca sativa HOM05D003665 ORTHO05D004387 3.5e-188 662.5 585 60.2
BraA07t29601Z Brassica rapa HOM05D003665 ORTHO05D004387 1.7e-187 660.2 484 68.2
Ca_01409_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 5.0e-187 658.7 470 72.8
BcaB06g25420 Brassica carinata HOM05D003665 ORTHO05D004387 1.1e-186 657.5 533 63.0
arahy.Tifrunner.gnm1.ann1.B5LWM3 Arachis hypogaea HOM05D003665 ORTHO05D004387 9.7e-183 644.4 455 71.6
PGR102G1414 Punica granatum HOM05D003665 ORTHO05D004387 6.5e-179 631.7 486 67.5
SEGI_16973 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 4.2e-178 629.0 441 69.6
Gohir.D08G215600 Gossypium hirsutum HOM05D003665 ORTHO05D004387 9.1e-173 611.3 431 73.5
Ah.12g061180 Amaranthus hybridus HOM05D003665 ORTHO05D004387 1.6e-172 610.5 441 70.7
HPP92_006598 Vanilla planifolia HOM05D003665 ORTHO05D004387 8.5e-171 604.7 565 59.6
Hund03712 Selenicereus undatus HOM05D003665 ORTHO05D004387 2.0e-167 593.6 369 78.6
Mapoly0115s0070 Marchantia polymorpha HOM05D003665 ORTHO05D004387 2.3e-163 580.1 607 53.9
SMO356G0046 Selaginella moellendorffii HOM05D003665 ORTHO05D004387 2.3e-155 553.5 532 54.7
Actinidia12926 Actinidia chinensis HOM05D003665 ORTHO05D004387 6.6e-155 552.0 337 81.3
Nitab4.5_0005900g0050 Nicotiana tabacum HOM05D003665 ORTHO05D004387 1.1e-154 551.2 585 54.2
AagrBONN_evm.TU.Sc2ySwM_228.3586 Anthoceros agrestis HOM05D003665 ORTHO05D004387 4.0e-152 542.7 519 55.3
Nitab4.5_0001211g0250 Nicotiana tabacum HOM05D003665 ORTHO05D004387 2.4e-149 533.5 614 51.6
Pp3c3_30360 Physcomitrium patens HOM05D003665 ORTHO05D004387 5.4e-149 532.3 599 50.4
AagrBONN_evm.TU.Sc2ySwM_117.1231 Anthoceros agrestis HOM05D003665 ORTHO05D004387 7.0e-149 531.9 489 55.6
AUR62037705 Chenopodium quinoa HOM05D003665 ORTHO05D004387 7.0e-149 531.9 500 58.4
AUR62020295 Chenopodium quinoa HOM05D003665 ORTHO05D004387 7.3e-146 521.9 470 60.6
Lj2C1027G11 Lonicera japonica HOM05D003665 ORTHO05D004387 9.5e-146 521.5 561 55.6
Peaxi162Scf00106g00431 Petunia axillaris HOM05D003665 ORTHO05D004387 2.3e-139 500.4 457 60.0
Actinidia13994 Actinidia chinensis HOM05D003665 ORTHO05D004387 6.6e-139 498.8 318 78.9
Pp3c10_13820 Physcomitrium patens HOM05D003665 ORTHO05D004387 3.6e-137 493.0 599 47.6
Sabra04G0142700 Salix brachista HOM05D003665 ORTHO05D004387 3.8e-134 483.0 364 69.0
unitig_899.g14918 Utricularia gibba HOM05D003665 ORTHO05D004387 1.3e-131 474.6 504 52.4
CDE08G0353 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 1.2e-124 451.4 297 76.4
PGSC0003DMG400019504 Solanum tuberosum HOM05D003665 ORTHO05D004387 7.6e-119 432.2 346 66.8
Zm00001eb139700 Zea mays HOM05D003665 ORTHO05D004387 9.9e-119 431.8 315 68.3
CAN.G479.67 Capsicum annuum HOM05D003665 ORTHO05D004387 5.5e-101 372.9 341 59.8
BcaB06g25423 Brassica carinata HOM05D003665 ORTHO05D004387 7.9e-92 342.4 310 59.0
Atru.chr3.3619 Acer truncatum HOM05D003665 ORTHO05D004387 2.0e-82 311.2 237 65.0
CDE02G0373 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 8.0e-76 289.3 207 69.1
CBR_g29308 Chara braunii HOM05D000019 ORTHO05D000002 3.7e-73 280.4 211 63.0
CDE08G1291 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 6.3e-73 279.6 194 71.6
Lsat_1_v5_gn_8_29480 Lactuca sativa HOM05D003665 ORTHO05D004387 9.1e-64 249.2 163 74.2
CDE02G1163 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 3.1e-56 224.2 202 58.9
Cre03.g154500 Chlamydomonas reinhardtii HOM05D003665 ORTHO05D004387 1.2e-52 212.2 270 42.2
CAN.G479.68 Capsicum annuum HOM05D000222 ORTHO05D004387 3.0e-51 207.6 156 66.7
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 2.6e-50 204.5 140 70.7
Lsat_1_v5_gn_6_45780 Lactuca sativa HOM05D003665 ORTHO05D004387 4.4e-50 203.8 133 73.7
TPR.G35439 Trifolium pratense HOM05D003665 ORTHO05D004387 4.9e-49 200.3 148 69.6
Actinidia13995 Actinidia chinensis HOM05D003665 ORTHO05D004387 8.3e-49 199.5 105 89.5
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 2.7e-47 194.5 132 70.5
MCO05G084 Micromonas commoda HOM05D003665 ORTHO05D004387 1.7e-46 191.8 494 29.1
Lsat_1_v5_gn_6_39960 Lactuca sativa HOM05D003665 ORTHO05D004387 1.4e-43 182.2 123 72.4
Cfa025752 Carpinus fangiana HOM05D003665 ORTHO05D004387 1.1e-40 172.6 543 27.3
Duzib235G1059 Durio zibethinus HOM05D003665 ORTHO05D004387 2.0e-39 168.3 152 61.2
SHI09320 Sapria himalayana HOM05D003665 ORTHO05D004387 3.9e-38 164.1 181 50.8
arahy.Tifrunner.gnm1.ann1.3H693L Arachis hypogaea HOM05D003665 ORTHO05D004387 6.2e-36 156.8 124 62.9
SHI09317 Sapria himalayana HOM05D003665 ORTHO05D004387 1.3e-30 139.0 78 84.6
Duzib084G1104 Durio zibethinus HOM05D003665 ORTHO05D004387 1.1e-29 136.0 78 80.8
Ca_23093_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 2.3e-27 128.3 65 95.4
VMungo0225G0001 Vigna mungo HOM05D003665 ORTHO05D004387 4.6e-23 114.0 68 80.9
SHI09315 Sapria himalayana HOM05D003665 ORTHO05D004387 2.5e-21 108.2 53 94.3
VMungo1074G0001 Vigna mungo HOM05D003665 ORTHO05D004387 2.5e-21 108.2 116 51.7
Glyma.11G146000 Glycine max HOM05D003665 ORTHO05D004387 5.6e-21 107.1 128 50.8
SHI09316 Sapria himalayana HOM05D003665 ORTHO05D004387 6.8e-19 100.1 62 71.0
BolC4t27275H Brassica oleracea HOM05D003665 ORTHO05D004387 6.0e-15 87.0 131 43.5
Lalb_Chr22g0350671 Lupinus albus HOM05D003665 ORTHO05D004387 1.4e-11 75.9 43 86.0
TPR.G15544 Trifolium pratense HOM05D003665 ORTHO05D004387 4.9e-09 67.4 47 61.7
HanXRQChr06g0179151 Helianthus annuus HOM05D003665 ORTHO05D004387 1.4e-08 65.9 36 80.6
HanXRQChr04g0103101 Helianthus annuus HOM05D003665 ORTHO05D004387 5.1e-06 57.4 32 78.1
Lsat_1_v5_gn_9_20280 Lactuca sativa HOM05D005041 ORTHO05D002973 5.1e-06 57.4 32 84.4


User provided reference genes

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