Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0022G066 Amborella trichopoda HOM05D006387 ORTHO05D008533 1.1e-133 479.9 238 100.0
MBI06_g39563_MAGBIO Magnolia biondii HOM05D006387 ORTHO05D008533 1.9e-85 319.7 229 69.9
Thecc.01G091900 Theobroma cacao HOM05D006387 ORTHO05D008533 1.8e-80 303.1 201 71.1
CiPaw.01G046800 Carya illinoinensis HOM05D006387 ORTHO05D008533 2.7e-79 299.3 201 70.6
Cfa004350 Carpinus fangiana HOM05D006387 ORTHO05D008533 3.5e-79 298.9 201 71.1
Atru.chr3.1288 Acer truncatum HOM05D006387 ORTHO05D008533 1.5e-77 293.5 225 65.8
Lj4g0015074 Lotus japonicus HOM05D006387 ORTHO05D008533 1.5e-77 293.5 201 67.7
PGSC0003DMG400016205 Solanum tuberosum HOM05D006387 ORTHO05D008533 1.5e-77 293.5 201 70.1
Solyc11g010510.2 Solanum lycopersicum HOM05D006387 ORTHO05D008533 2.5e-77 292.7 201 70.1
Nn5g29908 Nelumbo nucifera HOM05D006387 ORTHO05D008533 3.2e-77 292.4 201 69.2
Dinv13619 Davidia involucrata HOM05D006387 ORTHO05D008533 4.2e-77 292.0 201 69.7
PSO541G2357 Papaver somniferum HOM05D006387 ORTHO05D008533 5.5e-77 291.6 201 67.7
Sopen11g005290 Solanum pennellii HOM05D006387 ORTHO05D008533 5.5e-77 291.6 193 72.0
TWI53G0307 Tripterygium wilfordii HOM05D006387 ORTHO05D008533 1.6e-76 290.0 201 68.7
Prupe.6G197200 Prunus persica HOM05D006387 ORTHO05D008533 2.7e-76 289.3 193 71.5
MELO3C007722.2 Cucumis melo HOM05D006387 ORTHO05D008533 4.7e-76 288.5 201 69.7
Peaxi162Scf00447g00119 Petunia axillaris HOM05D006387 ORTHO05D008533 4.7e-76 288.5 201 68.7
Gorai.007G233200 Gossypium raimondii HOM05D006387 ORTHO05D008533 6.1e-76 288.1 198 69.2
RcHm_v2.0_Chr2g0111431 Rosa chinensis HOM05D006387 ORTHO05D008533 6.1e-76 288.1 201 68.7
vmacro18567 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 6.1e-76 288.1 193 70.5
Haze_15057 Corylus avellana HOM05D000344 ORTHO05D000934 8.0e-76 287.7 189 72.0
Ca_22597_v3 Cicer arietinum L. HOM05D006387 ORTHO05D008533 1.0e-75 287.3 201 65.2
TPR.G14610 Trifolium pratense HOM05D006387 ORTHO05D008533 1.0e-75 287.3 203 66.5
Zm00001eb038350 Zea mays HOM05D006387 ORTHO05D008533 1.0e-75 287.3 195 68.7
CAN.G1388.12 Capsicum annuum HOM05D006387 ORTHO05D008533 1.8e-75 286.6 202 67.8
Glyma.18G146100 Glycine max HOM05D006387 ORTHO05D008533 1.8e-75 286.6 201 67.7
MD15G1314800 Malus domestica HOM05D006387 ORTHO05D008533 1.8e-75 286.6 193 70.5
Nitab4.5_0001468g0050 Nicotiana tabacum HOM05D006387 ORTHO05D008533 1.8e-75 286.6 193 70.5
CsaV3_6G045090 Cucumis sativus L. HOM05D006387 ORTHO05D008533 4.0e-75 285.4 201 68.7
Manes.12G127300 Manihot esculenta HOM05D006387 ORTHO05D008533 8.8e-75 284.3 201 69.2
Cpa.g.sc55.48 Carica papaya HOM05D006387 ORTHO05D008533 1.2e-74 283.9 206 65.5
Eucgr.H04725 Eucalyptus grandis HOM05D006387 ORTHO05D008533 1.2e-74 283.9 191 69.6
Nitab4.5_0010196g0030 Nicotiana tabacum HOM05D006387 ORTHO05D008533 1.2e-74 283.9 199 68.3
SalBow5G0849 Salvia bowleyana HOM05D006387 ORTHO05D008533 1.2e-74 283.9 201 68.2
Aqoxy6G01447 Aquilegia oxysepala HOM05D006387 ORTHO05D008533 1.5e-74 283.5 197 68.5
arahy.Tifrunner.gnm1.ann1.K640S8 Arachis hypogaea HOM05D006387 ORTHO05D008533 1.5e-74 283.5 201 66.2
arahy.Tifrunner.gnm1.ann1.ZYRR1K Arachis hypogaea HOM05D006387 ORTHO05D008533 1.5e-74 283.5 201 66.2
Migut.K00786 Erythranthe guttata HOM05D006387 ORTHO05D008533 1.5e-74 283.5 191 70.7
QL06p047416 Quercus lobata HOM05D006387 ORTHO05D008533 1.5e-74 283.5 201 66.7
QL93p1865_0022 Quercus lobata HOM05D006387 ORTHO05D008533 1.5e-74 283.5 201 66.7
unitig_748.g8645 Utricularia gibba HOM05D006387 ORTHO05D008533 1.5e-74 283.5 185 74.6
CDE08G1301 Ceratophyllum demersum HOM05D006387 ORTHO05D008533 2.0e-74 283.1 193 69.9
Lju188A1T76 Lonicera japonica HOM05D006387 ORTHO05D008533 2.0e-74 283.1 193 69.4
FAN26G1841 Fragaria x ananassa HOM05D006387 ORTHO05D008533 4.4e-74 282.0 215 64.2
Os08g0478100 Oryza sativa ssp. japonica HOM05D006387 ORTHO05D008533 4.4e-74 282.0 195 67.2
Rhsim08G0015000 Rhododendron simsii HOM05D006387 ORTHO05D008533 4.4e-74 282.0 193 68.9
Cc07_g14250 Coffea canephora HOM05D006387 ORTHO05D008533 5.7e-74 281.6 201 65.7
Ciclev10026362m.g Citrus clementina HOM05D006387 ORTHO05D008533 7.5e-74 281.2 201 66.2
FvH4_1g19820 Fragaria vesca HOM05D006387 ORTHO05D008533 7.5e-74 281.2 215 64.2
Lj4A270T42 Lonicera japonica HOM05D006387 ORTHO05D008533 7.5e-74 281.2 193 68.9
Sed0018819 Sechium edule HOM05D006387 ORTHO05D008533 7.5e-74 281.2 193 69.4
Psat4g119200 Pisum sativum HOM05D006387 ORTHO05D008533 9.8e-74 280.8 193 65.8
Sc16g0000480 Simmondsia chinensis HOM05D006387 ORTHO05D008533 1.7e-73 280.0 191 70.2
Medtr8g068855 Medicago truncatula HOM05D006387 ORTHO05D008533 2.2e-73 279.6 193 65.8
Lalb_Chr05g0228491 Lupinus albus HOM05D006387 ORTHO05D008533 2.8e-73 279.3 201 64.2
THA.LOC104804173 Tarenaya hassleriana HOM05D006387 ORTHO05D008533 3.7e-73 278.9 197 69.0
FAN19G3199 Fragaria x ananassa HOM05D006387 ORTHO05D008533 4.8e-73 278.5 213 63.8
Potri.007G010400 Populus trichocarpa HOM05D006387 ORTHO05D008533 4.8e-73 278.5 205 67.8
MSTRG.15694 Avicennia marina HOM05D006387 ORTHO05D008533 6.3e-73 278.1 201 66.2
SGA_v2.0_scaffold52G19002 Striga asiatica HOM05D006387 ORTHO05D008533 6.3e-73 278.1 201 66.7
EL10Ac6g15218 Beta vulgaris HOM05D006387 ORTHO05D008533 1.1e-72 277.3 193 68.9
PGR102G1540 Punica granatum HOM05D006387 ORTHO05D008533 1.1e-72 277.3 209 64.6
AUR62003651 Chenopodium quinoa HOM05D006387 ORTHO05D008533 2.4e-72 276.2 193 68.4
Hund16539 Selenicereus undatus HOM05D006387 ORTHO05D008533 2.4e-72 276.2 206 64.1
Gohir.D11G217100 Gossypium hirsutum HOM05D006387 ORTHO05D008533 3.1e-72 275.8 198 67.7
ECA238G0943 Erigeron canadensis HOM05D006387 ORTHO05D008533 1.2e-71 273.9 193 66.8
Sabra07G0007900 Salix brachista HOM05D006387 ORTHO05D008533 1.2e-71 273.9 205 65.9
AUR62017959 Chenopodium quinoa HOM05D006387 ORTHO05D008533 2.7e-71 272.7 193 67.9
HanXRQChr14g0442661 Helianthus annuus HOM05D006387 ORTHO05D008533 4.5e-71 271.9 232 58.2
Gohir.A11G206500 Gossypium hirsutum HOM05D006387 ORTHO05D008533 5.9e-71 271.6 200 65.0
Thhalv10026114m.g Eutrema salsugineum HOM05D006387 ORTHO05D008533 1.1e-69 267.3 213 62.0
Carub.0007s0212 Capsella rubella HOM05D006387 ORTHO05D008533 1.9e-69 266.5 202 64.9
Sp7g10120 Schrenkiella parvula HOM05D006387 ORTHO05D008533 2.5e-69 266.2 201 65.2
Duzib187G0618 Durio zibethinus HOM05D006387 ORTHO05D008533 4.2e-69 265.4 202 63.9
Lsat_1_v5_gn_2_70881 Lactuca sativa HOM05D006387 ORTHO05D008533 4.2e-69 265.4 193 65.3
Aa31LG6G15050 Aethionema arabicum HOM05D006387 ORTHO05D008533 7.2e-69 264.6 193 65.3
FAN28G2490 Fragaria x ananassa HOM05D006387 ORTHO05D008533 7.2e-69 264.6 188 68.6
A04p09020 Brassica napus HOM05D006387 ORTHO05D008533 1.2e-68 263.8 201 63.7
BraA04t16597Z Brassica rapa HOM05D006387 ORTHO05D008533 1.2e-68 263.8 201 63.7
C04p42900 Brassica napus HOM05D006387 ORTHO05D008533 6.1e-68 261.5 201 63.2
CANSAT01G3264 Cannabis sativa HOM05D006387 ORTHO05D008533 6.1e-68 261.5 207 63.8
Phvul.003G289400 Phaseolus vulgaris HOM05D006387 ORTHO05D008533 6.1e-68 261.5 205 59.5
GSVIVG01003594001 Vitis vinifera HOM05D006387 ORTHO05D008533 6.1e-68 261.5 201 61.7
BcaC02g09451 Brassica carinata HOM05D006387 ORTHO05D008533 8.0e-68 261.2 201 63.2
GSVIVG01006732001 Vitis vinifera HOM05D006387 ORTHO05D008533 8.0e-68 261.2 201 61.7
AL7G12534 Arabidopsis lyrata HOM05D006387 ORTHO05D008533 1.4e-67 260.4 202 63.4
BcaNung03133 Brassica carinata HOM05D006387 ORTHO05D008533 1.4e-67 260.4 201 62.2
BolC4t25859H Brassica oleracea HOM05D006387 ORTHO05D008533 2.3e-67 259.6 201 62.7
ClCG01G018420 Citrullus lanatus HOM05D006387 ORTHO05D008533 1.2e-66 257.3 201 63.7
SEGI_33925 Sequoiadendron giganteum HOM05D006387 ORTHO05D008533 1.3e-65 253.8 204 58.3
Actinidia26608 Actinidia chinensis HOM05D006387 ORTHO05D008533 3.1e-64 249.2 200 61.0
vmacro09229 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 1.9e-56 223.4 143 74.8
CSS0019105 Camellia sinensis var. sinensis HOM05D006387 ORTHO05D008533 1.6e-55 220.3 133 79.7
Glyma.08G280000 Glycine max HOM05D006387 ORTHO05D008533 6.2e-52 208.4 135 74.1
AT4G38090 Arabidopsis thaliana HOM05D006387 ORTHO05D008533 8.9e-51 204.5 138 73.2
AagrBONN_evm.TU.Sc2ySwM_344.3556 Anthoceros agrestis HOM05D006387 ORTHO05D008533 2.1e-47 193.4 159 57.9
Pp3c7_18820 Physcomitrium patens HOM05D006387 ORTHO05D008533 2.3e-46 189.9 175 52.6
SMO361G0736 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 2.1e-44 183.3 130 66.9
Cre10.g448800 Chlamydomonas reinhardtii HOM05D006387 ORTHO05D008533 5.2e-43 178.7 192 48.4
vmacro14991 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 6.4e-41 171.8 154 56.5
Gorai.007G059200 Gossypium raimondii HOM05D006387 ORTHO05D008533 1.1e-40 171.0 225 43.1
Gohir.D11G054100 Gossypium hirsutum HOM05D006387 ORTHO05D008533 9.2e-40 167.9 225 43.1
Gohir.A11G050750 Gossypium hirsutum HOM05D006387 ORTHO05D008533 2.8e-36 156.4 232 42.2
MCO03G602 Micromonas commoda HOM05D006387 ORTHO05D008533 5.2e-35 152.1 198 41.4
VMungo0251G0198 Vigna mungo HOM05D006387 ORTHO05D008533 3.4e-34 149.4 102 70.6
SMO361G0739 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 8.4e-33 144.8 98 68.4
FAN23G2995 Fragaria x ananassa HOM05D006387 ORTHO05D008533 9.2e-32 141.4 113 63.7
SMO361G0500 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 2.1e-31 140.2 130 51.5
CARHR246490 Cardamine hirsuta HOM05D006387 ORTHO05D008533 1.0e-30 137.9 103 68.0
HPP92_016734 Vanilla planifolia HOM05D006387 ORTHO05D008533 1.3e-30 137.5 120 58.3
PRCOL_00004912 Prasinoderma coloniale HOM05D006387 ORTHO05D008533 1.9e-29 133.7 196 38.3
RcHm_v2.0_Chr2g0111411 Rosa chinensis HOM05D006387 ORTHO05D008533 1.1e-27 127.9 135 52.6
TPR.G1343 Trifolium pratense HOM05D000744 ORTHO05D000332 4.0e-27 125.9 93 61.3
vmacro10806 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 5.3e-27 125.6 110 57.3
COL.COLO4_27345 Corchorus olitorius HOM05D000344 ORTHO05D000934 1.6e-15 87.4 67 59.7
SMO004G0012 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 3.0e-14 83.2 64 62.5
HanXRQChr16g0520881 Helianthus annuus HOM05D006387 ORTHO05D008533 9.6e-13 78.2 49 75.5
Ah.03g140080 Amaranthus hybridus HOM05D006387 ORTHO05D008533 2.4e-11 73.6 71 47.9
HPP92_016750 Vanilla planifolia HOM05D006387 ORTHO05D008533 8.4e-09 65.1 68 52.9
Hma1.2p1_0119F.1_g056580 Hydrangea macrophylla HOM05D006387 ORTHO05D008533 2.7e-07 60.1 49 49.0
Actinidia06523 Actinidia chinensis HOM05D009440 ORTHO05D011919 4.6e-07 59.3 37 78.4
vmacro18321 Vaccinium macrocarpon HOM05D006387 ORTHO05D011088 8.7e-06 55.1 53 43.4


User provided reference genes

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