Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0022G053 Amborella trichopoda HOM05D004345 ORTHO05D005192 7.0e-242 840.1 398 100.0
ATR0691G134 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.9e-218 762.3 441 84.1
ATR0446G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.1e-175 620.2 441 71.7
ATR1192G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 3.7e-94 349.4 182 89.6
ATR0661G406 Amborella trichopoda HOM05D004345 ORTHO05D005192 7.1e-85 318.5 223 74.9
Nn1g01729 Nelumbo nucifera HOM05D004345 ORTHO05D005192 5.4e-77 292.4 437 40.7
TAR383G0351 Trochodendron aralioides HOM05D004345 ORTHO05D005192 6.4e-70 268.9 334 44.9
Aqoxy4G01527 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 1.6e-65 254.2 423 37.4
Aqoxy7G01729 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 4.8e-65 252.7 418 37.6
MBI07_g11743_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 1.2e-63 248.1 331 44.1
Dinv36001 Davidia involucrata HOM05D004345 ORTHO05D005192 2.2e-62 243.8 449 35.6
CANSAT21G1743 Cannabis sativa HOM05D004345 ORTHO05D005192 8.4e-62 241.9 444 35.8
Actinidia34666 Actinidia chinensis HOM05D004345 ORTHO05D005192 2.1e-60 237.3 438 35.4
Aqoxy4G03088 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 2.1e-60 237.3 430 35.6
Lj8C411T10 Lonicera japonica HOM05D004345 ORTHO05D005192 2.1e-57 227.3 433 35.3
QL04p019450 Quercus lobata HOM05D004345 ORTHO05D005192 2.1e-57 227.3 405 35.6
QL09p016785 Quercus lobata HOM05D004345 ORTHO05D005192 2.1e-57 227.3 409 35.2
DCAR_009432 Daucus carota HOM05D004345 ORTHO05D005192 4.0e-56 223.0 435 33.8
Eucgr.K02289 Eucalyptus grandis HOM05D004345 ORTHO05D005192 5.3e-56 222.6 443 34.3
QL07p000534 Quercus lobata HOM05D004345 ORTHO05D005192 4.5e-55 219.5 409 35.2
MELO3C021732.2 Cucumis melo HOM05D004345 ORTHO05D005192 7.6e-55 218.8 439 33.7
CsaV3_1G046170 Cucumis sativus L. HOM05D004345 ORTHO05D005192 7.6e-55 218.8 438 34.0
Sed0027926 Sechium edule HOM05D004345 ORTHO05D005192 7.6e-55 218.8 449 33.0
Rhsim12G0029000 Rhododendron simsii HOM05D004345 ORTHO05D005192 1.3e-54 218.0 342 38.6
Hund17623 Selenicereus undatus HOM05D004345 ORTHO05D005192 1.3e-54 218.0 450 34.0
CiPaw.16G081600 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.7e-54 217.6 442 32.1
Eucgr.C04176 Eucalyptus grandis HOM05D004345 ORTHO05D005192 1.7e-54 217.6 433 34.6
Ciclev10000213m.g Citrus clementina HOM05D004345 ORTHO05D005192 4.9e-54 216.1 439 33.7
CiPaw.12G040000 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.4e-53 214.5 441 33.1
Prupe.2G050600 Prunus persica HOM05D004345 ORTHO05D005192 9.3e-53 211.8 442 33.9
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 1.6e-52 211.1 439 33.3
Gohir.A11G329500 Gossypium hirsutum HOM05D004345 ORTHO05D005192 2.1e-52 210.7 429 33.6
Cfa020657 Carpinus fangiana HOM05D004345 ORTHO05D005192 4.6e-52 209.5 446 33.6
Gorai.007G379000 Gossypium raimondii HOM05D004345 ORTHO05D005192 4.6e-52 209.5 429 34.0
Manes.14G172500 Manihot esculenta HOM05D004345 ORTHO05D005192 3.0e-51 206.8 434 31.8
MD04G1026400 Malus domestica HOM05D004345 ORTHO05D005192 3.9e-51 206.5 450 33.1
VMungo1215G1527 Vigna mungo HOM05D004345 ORTHO05D005192 8.7e-51 205.3 429 35.7
FAN04G0730 Fragaria x ananassa HOM05D004345 ORTHO05D005192 1.1e-50 204.9 435 34.7
Migut.N02797 Erythranthe guttata HOM05D004345 ORTHO05D005192 1.5e-50 204.5 460 32.4
FAN13G0999 Fragaria x ananassa HOM05D004345 ORTHO05D005192 1.9e-50 204.1 435 34.3
Lsat_1_v5_gn_8_70480 Lactuca sativa HOM05D004345 ORTHO05D005192 1.9e-50 204.1 458 33.6
PGR044G2251 Punica granatum HOM05D004345 ORTHO05D005192 1.9e-50 204.1 344 38.7
Hund25524 Selenicereus undatus HOM05D004345 ORTHO05D005192 1.9e-50 204.1 434 32.5
Psat5g128760 Pisum sativum HOM05D004345 ORTHO05D005192 3.3e-50 203.4 427 34.0
AUR62032951 Chenopodium quinoa HOM05D004345 ORTHO05D005192 4.3e-50 203.0 435 31.5
PSO210G0907 Papaver somniferum HOM05D004345 ORTHO05D005192 7.4e-50 202.2 414 34.8
Lj5g0026700 Lotus japonicus HOM05D004345 ORTHO05D005192 1.3e-49 201.4 431 34.3
Phvul.011G090800 Phaseolus vulgaris HOM05D004345 ORTHO05D005192 2.1e-49 200.7 433 34.9
FvH4_5g25850 Fragaria vesca HOM05D004345 ORTHO05D005192 3.7e-49 199.9 438 34.5
FAN18G0597 Fragaria x ananassa HOM05D004345 ORTHO05D005192 3.7e-49 199.9 438 34.5
HPP92_000827 Vanilla planifolia HOM05D004345 ORTHO05D005192 3.7e-49 199.9 371 35.8
MSTRG.24391 Avicennia marina HOM05D004345 ORTHO05D005192 1.1e-48 198.4 475 31.4
HanXRQChr07g0196981 Helianthus annuus HOM05D004345 ORTHO05D005192 1.4e-48 198.0 435 31.5
VMungo1127G1998 Vigna mungo HOM05D004345 ORTHO05D005192 2.4e-48 197.2 429 35.2
CSS0030547 Camellia sinensis var. sinensis HOM05D004345 ORTHO05D005192 9.0e-48 195.3 257 42.4
Nitab4.5_0001423g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 9.0e-48 195.3 450 31.6
EL10Ac9g22980 Beta vulgaris HOM05D000200 ORTHO05D001546 2.0e-47 194.1 437 32.7
Nitab4.5_0001903g0100 Nicotiana tabacum HOM05D004345 ORTHO05D005192 2.0e-47 194.1 456 30.7
Cc07_g15690 Coffea canephora HOM05D004345 ORTHO05D005192 2.6e-47 193.7 481 30.6
vmacro01076 Vaccinium macrocarpon HOM05D004345 ORTHO05D005192 2.6e-47 193.7 336 36.0
ATR1192G002 Amborella trichopoda HOM05D004345 ORTHO05D005192 3.4e-47 193.4 104 92.3
ECA238G4368 Erigeron canadensis HOM05D004345 ORTHO05D005192 4.5e-47 193.0 349 33.8
Glyma.10G030100 Glycine max HOM05D004345 ORTHO05D005192 7.6e-47 192.2 432 33.1
Oeu031657.1 Olea europaea HOM05D004345 ORTHO05D005192 1.7e-46 191.0 475 31.4
Solyc01g098450.4 Solanum lycopersicum HOM05D004345 ORTHO05D005192 1.7e-46 191.0 377 34.7
Glyma.02G144000 Glycine max HOM05D004345 ORTHO05D005192 3.8e-46 189.9 328 36.9
Sabra12G0028400 Salix brachista HOM05D004345 ORTHO05D005192 3.8e-46 189.9 452 32.1
Potri.012G041300 Populus trichocarpa HOM05D004345 ORTHO05D005192 8.4e-46 188.7 451 30.4
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 1.4e-45 188.0 449 30.5
Sopen01g042020 Solanum pennellii HOM05D004345 ORTHO05D005192 1.4e-45 188.0 311 37.6
ECA234G4090 Erigeron canadensis HOM05D004345 ORTHO05D005192 1.9e-45 187.6 357 33.9
TWI31G0574 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 1.9e-45 187.6 351 34.2
SEGI_03816 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 2.5e-45 187.2 244 41.8
Os03g0240400 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 3.2e-45 186.8 428 33.2
TWI60G1145 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 9.3e-45 185.3 334 34.1
Zm00001eb399070 Zea mays HOM05D004345 ORTHO05D005192 3.5e-44 183.3 425 29.6
Peaxi162Scf00434g00066 Petunia axillaris HOM05D004345 ORTHO05D005192 4.6e-44 183.0 341 37.0
SalBow3G2318 Salvia bowleyana HOM05D004345 ORTHO05D005192 7.9e-44 182.2 439 32.1
Lalb_Chr21g0307461 Lupinus albus HOM05D004345 ORTHO05D005192 1.3e-43 181.4 432 31.7
TPR.G10330 Trifolium pratense HOM05D004345 ORTHO05D005192 1.3e-43 181.4 337 36.8
Nitab4.5_0008354g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 3.0e-43 180.3 252 39.7
Medtr3g069120 Medicago truncatula HOM05D004345 ORTHO05D005192 8.7e-43 178.7 438 32.0
Ah.01g012750 Amaranthus hybridus HOM05D004345 ORTHO05D005192 1.9e-42 177.6 431 29.5
Ah.03g148550 Amaranthus hybridus HOM05D004345 ORTHO05D005192 3.3e-42 176.8 444 28.8
Gohir.D11G348700 Gossypium hirsutum HOM05D004345 ORTHO05D005192 3.3e-42 176.8 236 42.4
CiPaw.12G046900 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.3e-41 174.9 425 31.8
PSO384G0711 Papaver somniferum HOM05D004345 ORTHO05D005192 2.8e-41 173.7 389 33.4
Duzib116G0224 Durio zibethinus HOM05D004345 ORTHO05D005192 4.8e-41 172.9 270 38.1
Ca_09724_v3 Cicer arietinum L. HOM05D004345 ORTHO05D005192 6.3e-41 172.6 284 36.6
SHI21683 Sapria himalayana HOM05D004345 ORTHO05D005192 5.3e-40 169.5 438 29.0
CiPaw.12G047000 Carya illinoinensis HOM05D004345 ORTHO05D005192 7.7e-39 165.6 411 30.2
Dinv39346 Davidia involucrata HOM05D004345 ORTHO05D005192 2.9e-38 163.7 417 32.4
PSO384G0273 Papaver somniferum HOM05D004345 ORTHO05D005192 5.5e-37 159.5 248 39.9
Aa31LG8G3600 Aethionema arabicum HOM05D004345 ORTHO05D005192 1.1e-34 151.8 340 29.7
CDE09G0455 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 1.5e-34 151.4 153 47.7
unitig_744.g24116 Utricularia gibba HOM05D004345 ORTHO05D005192 4.3e-34 149.8 362 29.8
CDE12G0342 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 1.8e-32 144.4 153 47.7
CARHR093680 Cardamine hirsuta HOM05D004345 ORTHO05D005192 6.9e-32 142.5 344 28.5
Os09g0104700 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 2.0e-31 141.0 441 27.4
BolC5t33472H Brassica oleracea HOM05D004345 ORTHO05D005192 2.9e-30 137.1 322 30.4
BraA05t21971Z Brassica rapa HOM05D004345 ORTHO05D005192 3.8e-30 136.7 323 31.3
Carub.0003s1810 Capsella rubella HOM05D004345 ORTHO05D005192 8.5e-30 135.6 327 28.1
Thhalv10020051m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 8.5e-30 135.6 348 29.0
SMO203G0127 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 1.9e-29 134.4 367 26.7
A05p31330 Brassica napus HOM05D004345 ORTHO05D005192 1.6e-28 131.3 323 30.7
THA.LOC104803578 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 2.7e-28 130.6 359 29.2
AL3G31560 Arabidopsis lyrata HOM05D004345 ORTHO05D005192 7.9e-28 129.0 349 27.2
Pp3c14_24820 Physcomitrium patens HOM05D004345 ORTHO05D005192 7.9e-28 129.0 485 26.4
AT3G18310 Arabidopsis thaliana HOM05D004345 ORTHO05D005192 2.3e-27 127.5 327 27.2
Sp3g16450 Schrenkiella parvula HOM05D004345 ORTHO05D005192 2.3e-27 127.5 346 27.2
QL07p000983 Quercus lobata HOM05D004345 ORTHO05D005192 1.5e-26 124.8 187 38.0
SMO297G0008 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 2.0e-26 124.4 365 24.1
RcHm_v2.0_Chr6g0264721 Rosa chinensis HOM05D004345 ORTHO05D005192 3.3e-26 123.6 204 38.7
AagrBONN_evm.TU.Sc2ySwM_344.4665 Anthoceros agrestis HOM05D004345 ORTHO05D005192 1.7e-25 121.3 417 24.2
ATR0560G006 Amborella trichopoda HOM05D004345 ORTHO05D005192 4.8e-25 119.8 57 91.2
C05p47630 Brassica napus HOM05D004345 ORTHO05D005192 4.8e-25 119.8 343 28.3
Thhalv10003730m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 2.4e-24 117.5 279 29.0
Mapoly0100s0030 Marchantia polymorpha HOM05D004345 ORTHO05D005192 1.2e-23 115.2 396 23.5
C05p47510 Brassica napus HOM05D004345 ORTHO05D005192 8.5e-22 109.0 256 31.2
Thecc.05G018000 Theobroma cacao HOM05D004345 ORTHO05D005192 4.7e-20 103.2 123 41.5
Gorai.007G313800 Gossypium raimondii HOM05D004345 ORTHO05D005192 6.1e-20 102.8 162 37.7
Gohir.D11G289900 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.8e-19 101.3 162 37.0
Cpa.g.sc4881.1 Carica papaya HOM05D004345 ORTHO05D005192 4.1e-16 90.1 94 48.9
RcHm_v2.0_Chr7g0216331 Rosa chinensis HOM05D004345 ORTHO05D005192 4.5e-15 86.7 79 51.9
ATR0661G336 Amborella trichopoda HOM05D004345 ORTHO05D005192 9.4e-13 79.0 39 84.6
QL07p001298 Quercus lobata HOM05D004345 ORTHO05D005192 1.2e-12 78.6 328 25.3
Psat5g200920 Pisum sativum HOM05D000856 ORTHO05D005192 3.0e-11 73.9 94 43.6
Cpa.g.sc3060.1 Carica papaya HOM05D004345 ORTHO05D005192 9.8e-10 68.9 261 26.4
BcaB06g25876 Brassica carinata HOM05D004345 ORTHO05D005192 4.8e-09 66.6 147 30.6


User provided reference genes

Program Settings